BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25200.1
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492313 jgi|Araly1|492313|fgenesh2_kg.7__1746__AT4G25200.1 1098 0.0
> Ahg492313 jgi|Araly1|492313|fgenesh2_kg.7__1746__AT4G25200.1
Length=833
Score = 1098 bits (594), Expect = 0.0
Identities = 720/779 (92%), Gaps = 16/779 (2%)
Strand=Plus/Plus
Query 2 CACACAGTTCTCAGAT-AAATACTA--AACTCACTGTTAAAACTTTCTCAACAAAGCTTC 58
|||||||||||||||| ||| |||| |||| |||||||||||||||||| ||||||||
Sbjct 1 CACACAGTTCTCAGATAAAACACTACTTACTCTCTGTTAAAACTTTCTCAAAAAAGCTTC 60
Query 59 CTGTTTCTCTACAAATGGCATCTGCTCTCGCTCTTAAGAGACTCCTATCATCCTCCATCG 118
| |||||||||||||||||||| ||||||||||||||||||| || || || |||||||
Sbjct 61 ATATTTCTCTACAAATGGCATCTTCTCTCGCTCTTAAGAGACTTCTTTCTTCTTCCATCG 120
Query 119 CTCCACGTTCCCGTAGTGTTCTTCGTCCAGCTGTTTCCTCTCGCCTCTTCAACACCAACG 178
||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 121 TTCCACGTTCCCGTAGCGTTCTTAGTCCAGCCGTTTCCTCTCGCCTCTTCAACACCAACG 180
Query 179 CCGTTAGGAGCTACGACGACGACGGCGAAAATGGAG-ACGGCGTTGATTTATATCGCCGC 237
|||| |||||||||| |||||| ||||| ||||| | | ||||||||||| ||||||||
Sbjct 181 CCGTGAGGAGCTACGGCGACGATGGCGAGAATGG-GCAAGGCGTTGATTTCGATCGCCGC 239
Query 238 TCTGTTCCTCGCCGCCGTGGTGATTTCTTCTCAGATGTGTTTGATCCGTTTTCGCCGACG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTGTTCCTCGCCGCCGTGGTGATTTCTTCTCAGATGTGTTTGATCCGTTTTCGCCGACG 299
Query 298 AGGAGCGTTAGTCAAGTGCTGAATCTGATGGACCAGTTCATGGAGAATCCTCTGTTATCA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGGAGCGTTAGTCAAGTGCTGAATCTGATGGACCAGTTCATGGAGAATCCTCTGTTATCA 359
Query 358 GCTACTCGTGGCATGGGAGCTTCAGGAGCTCGTCGTGGTTGGGATATAAAAGAGAAAGAC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCTACTCGTGGCATGGGAGCTTCAGGAGCTCGTCGTGGTTGGGATATAAAAGAGAAAGAC 419
Query 418 GATGCTCTGTACCTGAGAATCGACATGCCTGGGCTGAGCAGAGAGGATGTGAAGCTGGCT 477
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATGCTCTTTACCTGAGAATCGACATGCCTGGGCTGAGCAGAGAGGATGTGAAGCTGGCT 479
Query 478 TTGGAGCAGGACACTCTGGTGATTAGAGGAGAAGGAAAAAACGAGGAAGATGGTGGCGAG 537
||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |||||||
Sbjct 480 TTGGAGCAGGACACTCTGGTGATTAGAGGAGAAGGGAAATACGAGGACGATGCTGGCGAG 539
Query 538 GAAGGAGA---GAGCGGTAATCGGAGATTCACAAGCAGGATTGGATTACCGGATAAGATT 594
|||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 540 GAAGGAGATCAGAGCGGTAATCGGAGATTCACTAGCAGGATTGGGTTACCGGAGAAGATT 599
Query 595 TACAAGATCGATGAGATTAAGGCGGAGATGAAGAACGGAGTGTTGAAAGTTGTGATCCCG 654
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 600 TACAAGGTTGATGAGATTAAGGCGGAGATGAAGAACGGAGTGTTGAAAGTTGTGATTCCG 659
Query 655 AAGATGAAAGAACAAGAGAGAAATGATGTTCGTCAGATCGAGATCAACTAAAAACGTCGA 714
||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||| |
Sbjct 660 AAGATGAAAGAGCAAGAGAGAAATGATGTGCGTCAGATCGAGATTAACTAAAA-CGTTGT 718
Query 715 CG-tttttt-tCT-GTTCTAGTTTTGTTGATAGGTCTTTGAATAAGAAGTGTGTGTAGT 770
|| |||||| | | ||| | |||||||| | | ||||||||||| | |||||||||||
Sbjct 719 CGGTTTTTTGTTTTGTTTT-GTTTTGTTTTTTG-TCTTTGAATAA-A-GTGTGTGTAGT 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5