BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25210.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945574 jgi|Araly1|945574|scaffold_701803.1 1543 0.0
Ahg897096 jgi|Araly1|897096|Al_scaffold_0005_1062 294 1e-78
> Ahg945574 jgi|Araly1|945574|scaffold_701803.1
Length=1136
Score = 1543 bits (835), Expect = 0.0
Identities = 1054/1157 (91%), Gaps = 25/1157 (2%)
Strand=Plus/Plus
Query 93 ctctctctctcGTAACTGTTTGTTCGATGGCACCGAAGAAGGCGGAGGAAGTGGTCGA-A 151
|||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |
Sbjct 1 CTCTCTCTCTCGTAACTG--TATTCGATGGCACCGAAGAAGGCAGAGGAAGTGGTCGACA 58
Query 152 AGCCCTCCTGTTTCCAGTGAAGAAGAAGAATCTGGCTCATCTGGAGAAGAATCTGAATCT 211
| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 59 A-CCCTCCTACTTCCAGTGAAGAAGAGGAATCTGGCTCATCTGGAGAAGAATCTGAGTCT 117
Query 212 TCTGCTGAAGTTCCGAAGAAAGTCGAGTCTTCGCAA-AAGCCTGAATCTGACTCTGAAGG 270
|||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct 118 TCTGCTGAAGTTTCGAAGAAAGACGAGTCTTC-CAAGAAGCCTGAATCTGACTCTGAAGG 176
Query 271 CGAATCTGAATCGGAGTCCAGTTCTGGGCCCGAGCCCGAGTCCGAGCCTGCTAAGACGAT 330
|| | |||||| | | || | |||| |||| || |||||||||||||||||
Sbjct 177 TGATTATGAATC-G-G---AG---T----CCGAATCCGATTCGGAGCCTGCTAAGACGAT 224
Query 331 CAAGCTGAAGCCTGTTGGGACTAAACCAATTCCAGAGACGTCTGGATCTGCCGCGACTGT 390
|||||| |||| ||| ||| ||||||||||||| | |||||||||||||||||||||
Sbjct 225 GGAGCTGATGCCTCTTGTGACCAAACCAATTCCAGCCAAGTCTGGATCTGCCGCGACTGT 284
Query 391 ACCTGAGAGTTCAACGGCTAAGCGTCCTTTGAAGGAAGCTGCTCCTGAAGCTATTAAGAA 450
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 285 ACCTGAGAGTTCAACGGCTAAGCGTCCTTTGAAGGAACCTGCTTCTGAAGCTATTAAGAA 344
Query 451 GCAGAAGACATCGGACACTGAGCATGTGAAGAAGCCGATAACTAATGATGAGGTTAAGAA 510
|| ||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||||
Sbjct 345 GCTCAAGACATCGGAGACTGACCATGCGAAGAAGCCGATAACAAATGATGAGGTTAAGAA 404
Query 511 GATTTCTTCAGAGGATGCTAAGAAGATGTTTCAGAGATTGTTCAGTGAGACGGATGAAAT 570
||||||| ||| |||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 405 GATTTCTGGAGATGATGCTAAGAAGATGTTTCAGAGATTGTTCAGCGAGGCTGATGAAAT 464
Query 571 CGCTTTGCTTCAAGGTATTATTGATTTCACATCTACCAAAGGAGATCCTTATGAGGATAT 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 CGCTTTGCTTCAAGGTATTATTGATTTCACATCTACCAAAGGAGATCCTTATGAGGATAT 524
Query 631 TGATGCTTTTTGCATTTATGTGAAGAAACTGATCGATTTCGATGCTACCAAAAACCAAAT 690
||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 525 TGATGCTTTTTGCATTTATGTTAAGAAGTTGATCGATTTCAATGCTACCAAAAACCAAAT 584
Query 691 TGTTACTAAACTTCAGAGGTTGAAGAAGAAGTTTAATAATGCTGTGAAGAATTCTCTTAA 750
|| || |||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 585 CGTGACCAAACTTCAGAGGTTGAAGAAGAAGTTTAATAACACTGTGAAGAAGTCGCTTAA 644
Query 751 GAAGGGAAAGACTGAAGATGATATTGAGTTTGCTAAAGATCTTGAGCAAAAAGGTTTTGA 810
||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| |||||
Sbjct 645 GAAGGGAAAGACTGAAGATGAGATTGAATTTGCTAAAGATATTGAGCAGAAAGGCTTTGA 704
Query 811 ATTGTCCAGAAAGATTTGGGGAAGCAATGGTGTTTTGG-TTACTGGTAAATCATCAAGGA 869
|||||||||||||||||||||| |||||||||||||| || || ||||||||||| |
Sbjct 705 CTTGTCCAGAAAGATTTGGGGAAACAATGGTGTTTTGGCTT-CT---AAATCATCAAGAA 760
Query 870 AGAAAGTTGGAGGAACACCTGCACCGAAAGAGATGAAGTTAGTAGCTCACTCTACTCCCA 929
|||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 761 AGAAAGTTGGAGGAACCCCTGCCCCGAAAGAGATGAAGTTAGTAGCTCACTCTTCTCCCA 820
Query 930 AGAAACAACAAGAAGAAGCGAAGAAACCGGAAAGAACAGAGGCAAAGGTTGTGAACACAG 989
||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||
Sbjct 821 AGAAACAACAAGAAGAAGCCAAGAAACCGGAAAAAACAGAGACAAAGGTTGTGAACACAA 880
Query 990 GTCTCTCCATTGGTAAAGAGATTGCATCGTTCCTCAATGCAGATAATGGGAGTTCTTGTG 1049
||||||| ||||||| |||||| || |||||| |||||||||| |||| ||| |||||||
Sbjct 881 GTCTCTCTATTGGTAGAGAGATAGCGTCGTTCTTCAATGCAGAGAATGCGAGCTCTTGTG 940
Query 1050 GTTTGGATGAATCCACATTAACTGCGGTTTGGGCAAAGGTTGCGGATGGAGCTGAGAAGA 1109
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 941 GTTTGGATGAATCCACAATAACTGCGGTTTGGGCAAAGGTTGCGGATGGAGCAGAGAAGA 1000
Query 1110 GAGAAGTGGAGGAGAAA-TGGAAGAAGCTTAAGGCTAAGCAGTTTGAGCTATGTTTGCAG 1168
|||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1001 GAGAAGTGGAGG-GAAAATGGAAGAAGCTCAAGGCTAAGGAGTTTGAGCTATGTTTGCAG 1059
Query 1169 AGGTCTGGACTCGTGAATGAAACTGCAAAGATGATATTCAAAGCCTATGAATCTTGAGCG 1228
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1060 AGGTCTGGACTCGTGAACGAAACTGCAAAGATGATATTCAAAGCCTATGAATCCTGAGCG 1119
Query 1229 Gtttgtctttttacttt 1245
|||||||||||||||||
Sbjct 1120 GTTTGTCTTTTTACTTT 1136
> Ahg897096 jgi|Araly1|897096|Al_scaffold_0005_1062
Length=207
Score = 294 bits (159), Expect = 1e-78
Identities = 193/209 (92%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 1019 TTCCTCAATGCAGATAATGGGAGTTCTTGTGGTTTGGATG-AATCCACATTAACTGCGGT 1077
||| |||||||||| ||| ||||| |||||||||||||| ||| |||| ||||||||||
Sbjct 1 TTCTTCAATGCAGAGAATAAGAGTTTTTGTGGTTTGGATGAAAT-CACAATAACTGCGGT 59
Query 1078 TTGGGCAAAGGTTGCGGATGGAGCTGAGAAGAGAGAAGTGGAGGAGAAATGGAAGAAGCT 1137
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 60 TTGGGCAAAGGTTGCGGATGGAGCAGAGAAGAGAGAAGTGGAGGAAAAATGGAAGAAGCT 119
Query 1138 TAA-GGCTAAGCAGTTTGAGCTATGTTTGCAGAGGTCTGGACTCGTGAATGAAACTGCAA 1196
|| || |||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 CAATGG-TAAGGAGTTTGAGCTATGTTTGCAGAGGTCTGGACTCGTGAACGAAACTGCAA 178
Query 1197 AGATGATATTCAAAGCCTATGAATCTTGA 1225
||||||||||||||||||||||||| |||
Sbjct 179 AGATGATATTCAAAGCCTATGAATCCTGA 207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5