BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25220.1
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492311 jgi|Araly1|492311|fgenesh2_kg.7__1744__AT4G25220.1 2571 0.0
Ahg922121 jgi|Araly1|922121|scaffold_103402.1 1061 0.0
> Ahg492311 jgi|Araly1|492311|fgenesh2_kg.7__1744__AT4G25220.1
Length=1686
Score = 2571 bits (1392), Expect = 0.0
Identities = 1556/1635 (95%), Gaps = 11/1635 (1%)
Strand=Plus/Plus
Query 3 CCATTGTAGTTGAAGAACGGAGAGGGAGAG-AGAGATAAC-TTTCTCCTCTTTTAAAATT 60
|||||| ||||||||||| |||| ||| | |||||| || |||||||||| || || ||
Sbjct 1 CCATTGAAGTTGAAGAAC--AGAGAGAG-GTAGAGAT-ACTTTTCTCCTCTCTTCAACTT 56
Query 61 TCAAAAGTGATCCAAATTCCAGGTTCTGGCGTCTTGAGGAGTTGCTT-AAGAGATGGCGT 119
||||| |||||| |||||||||||| ||||||| ||||||||| || ||||||||||||
Sbjct 57 TCAAAGGTGATCTAAATTCCAGGTTTTGGCGTCGCGAGGAGTTG-TTAAAGAGATGGCGT 115
Query 120 CATGGACTTCATCCCAGTTCCTGTATGAAGAAACCAAGCCATGGGGTATTCAGTTCTTGG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CATGGACTTCATCCCAGTTCCTGTATGAAGAAACCAAGCCATGGGGTATTCAGTTCTTGG 175
Query 180 AAAAGTTTAAGCGTTCAGGAAGACTCTCCTTCAAGCAATACCAAGCCCTTGTCTTCATTT 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 176 AACGGTTTAAGCGTTCAGGAAGACTCTCCTTCAAGCAATACCAAGCCCTTGTCTTCATCT 235
Query 240 TGACCTTTGTCGCCTACATCGCCTTCCATGCTGCCCGAAAGCCCAATAGCATTGTCAAGG 299
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 236 TGACCTTTGTCGCCTACGTCGCCTTCCATGCTGCTCGAAAGCCCAATAGCATTGTCAAGG 295
Query 300 GAACACTTTCTGCATCAACAATCGAAGGCGGTTGGGCTCCTTTTGATGGACCTGATGGAA 359
|||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 296 GAACGCTTTCCGCATCAACAATCAAAGGCGGTTGGGCTCCTTTTGATGGACCCGATGGAC 355
Query 360 CAGCCTTGCTTGGGCAGATCGACTTGGCTTTCCTCTCTGTCTATGCGGTTGGGATGTTTG 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 356 CAGCCTTGCTTGGGCAGATCGACTTGGTTTTCCTCTCTGTCTATGCGGTTGGGATGTTTG 415
Query 420 TGGCAGGTCACTTGGGCGATCGTTTGGATCTCAGGACGTTTCTGACCATCGGTATGATCG 479
|||| || |||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 416 TGGCGGGCCACTTGGGAGATCGTTTGGATCTCAGGACGTTTCTGACTATCGGAATGATCG 475
Query 480 GGACCGGCCTTTTCACAGCTCTCTTCGGGGTCGCATTCTGGGCGAATTTCCACAGCTTCT 539
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 476 GGACCGGCCTTTTCACAGCTCTATTTGGGGTCGCATTCTGGGCAAATTTCCACAGCTTCT 535
Query 540 ACTATTTCTTGGCGGTTCAGGTTATGGCGGGGTTGTTTCAGTCGATAGGTTGGCCTTGTA 599
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 536 ACTATTTCTTGGCGGTTCAGGTTATGGCGGGGTGGTTTCAGTCGATAGGTTGGCCTTGTG 595
Query 600 TCGTGGCTGTGCTCGGGAATTGGTTCGACAAGAAGAGAAGAGGAATGATTATGGGTGTTT 659
| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 596 TTGTGGCCGTGCTCGGGAACTGGTTCGACAAGAAGAGAAGAGGAATGGTTATGGGTGTTT 655
Query 660 GGAGCGCTCACACTTCCCTCGGTAACATTGCAGGGTCTCTGATCGCGTCTGGGCTGCTTA 719
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 656 GGAGTGCTCACACTTCCCTCGGTAACATCGCAGGGTCTCTGATCGCATCTGGGCTGCTTA 715
Query 720 GATATGGGTGGGGTTGGTCATTTCTTGGCCCGGCTTTTCTCATGACTTTTCTTGGGATCG 779
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 716 GATATGGGTGGGGTTGGTCATTTCTTGGCCCGGCTTTGCTCATGACTTTTCTTGGGATCG 775
Query 780 TTGTTTACCTTTTCTTGCCGGTGAATCCTCCAACCGTTGAGGCAGAGAGAGATGGAACTG 839
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 776 TTGTTTACCTTTTCTTGCCGGTGAATCCTCCAACCGTTGAGGCTGAGAGAGATGGAACTG 835
Query 840 AAATTGACTCTACCATGAGGCTCGGTGACACCATTACAGAGAGCTTATTGGAATCTAGAA 899
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 836 AAATTGACTCCACCATGAGGCTCGGTGACACCATTACAGAGAGCTTCTTGGAATCTAGAA 895
Query 900 TGAGTACTGGATTCGATAGAAAGGCAGTCGGGTTCATGGCCGCTTGGAAAATCCCCGGTG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TGAGTACTGGATTCGATAGAAAGGCAGTCGGGTTCATGGCCGCTTGGAAAATCCCCGGTG 955
Query 960 TTGCTCCTTTCGCCTTCTGCCTCTTCTTCACAAAGTTGGTCTCATACACTTTCCTCTACT 1019
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 956 TTGCTCCTTTCGCCTTCTGCCTCTTCTTCACCAAGTTGGTCTCATACACATTCCTCTACT 1015
Query 1020 GGCTTCCTTTCTACGTCAGCCACAACATGATCGGAGGAGAGTACCTGTCAGAGGAGACAT 1079
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1016 GGCTTCCTTTCTACGTCAGCCACAACATGATCGGAGGAGAGTACCTGTCTGAGGAGACAT 1075
Query 1080 CAGGAAACTTGTCGACAATCTTCGATGTTGGAGGCGTTGTTGGTGGAGTCTTAGCCGGAT 1139
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1076 CAGGAAACTTGTCAACAATCTTCGATGTTGGAGGTGTTGTTGGTGGGGTCTTAGCCGGAT 1135
Query 1140 ACATATCTGATCAACTCAACGGCAGAGCCATCACAGCAGCAGGATTCATGTACTTGGCCA 1199
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1136 ACATGTCTGATCAACTCAACGGCAGAGCGATCACAGCAGCAGGATTCATGTACTTGGCAA 1195
Query 1200 TCCCAGCTCTTTTCCTCTACAGAGTCTTTGGACACATCTCATTGACCATCAATGTCATCC 1259
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1196 TCCCAGCTCTTTTCCTCTACAGAGTCTTGGGACATATCTCATTGACCATCAATGTCATCC 1255
Query 1260 TCATGTTCACATCAGGAGTCTTCATCATTGGACCATTTGCTCTCATCACAACAGCTGTCT 1319
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TCATGTTCATATCAGGAGTCTTCATCATTGGACCATTTGCTCTCATCACAACAGCTGTCT 1315
Query 1320 CAGCTGATCTCGGAACCCACAAATCTCTCAAAGGCAATGCAAGGGCTTTGGCTACAGTCT 1379
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1316 CAGCTGATCTCGGAACACACAAATCTCTCAAAGGCAATGCCAGGGCTTTGGCTACAGTCA 1375
Query 1380 CAGCTATCATAGACGGCACAGGATCCGTCGGTGCTGCGATTGGACCAGTCCTCACTGGTT 1439
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CAGCTATCATAGACGGTACAGGATCCGTCGGTGCTGCGATTGGACCAGTCCTCACTGGTT 1435
Query 1440 ACATCTCTGCCATAAGCTGGGACGCAGTGTTTTACATGTTGATGACTGCAGCATTGATCT 1499
|||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1436 ACATCTCTGCGATTAGCTGGGACGCAGTGTTTTACATGTTGATGACTGCGGCTTTGATCT 1495
Query 1500 CTGGATTGTTGCTCACTAAACTAATCATAGCAGAAGTCAAAGCGTTATTGTTTGGATCAG 1559
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1496 CTGGATTGTTGCTCACTAAACTAATCATAGCAGAAGTCAAGGCTTTGTTGTTTGGATCAG 1555
Query 1560 AAGATGAAGTAGCTGCATCATCATCATCACCACCAGCATCCAGACCTCCCATTGATGTCC 1619
|||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1556 AAGAAGAAGTAGCTGCATCATCATCATCACCA---GCATCCAGAGCTCCCATTGATGTCC 1612
Query 1620 TCGtttgagtttttt 1634
|| ||||||||||||
Sbjct 1613 TCCTTTGAGTTTTTT 1627
> Ahg922121 jgi|Araly1|922121|scaffold_103402.1
Length=1573
Score = 1061 bits (574), Expect = 0.0
Identities = 1200/1497 (80%), Gaps = 63/1497 (4%)
Strand=Plus/Plus
Query 104 GCTTAAGAGATGGCGTCATGGACTTCATCCCAGTTCCTGTATGAAGAAACCAAGCCATGG 163
||| |||| |||||||| ||||||||||| | ||||| ||||||||| || |||
Sbjct 14 GCTAAAGACATGGCGTCGTGGACTTCATCTGAATTCCTCTATGAAGAAGTAAAACCACCA 73
Query 164 GGTATTCAGTTCTTGGAAAAGTTT-AAGCGTTCAGG-AAGACTCTCCTTCAAGCAATACC 221
|||||||| ||| | | || |||| ||||||||||| || |||||| |||||||| || |
Sbjct 74 GGTATTCATTTCCTAG-AACGTTTCAAGCGTTCAGGCAA-ACTCTCTTTCAAGCAGTATC 131
Query 222 AAGCCCTTGTCTTCATTTTGACCTTTGTCGCCTACATCGCCTTCCATGCTGCCCGAAAGC 281
|||| | ||||| | |||||||| |||| || || |||||||| || |||||||||
Sbjct 132 AAGCAATGGTCTTTGTCTTGACCTTCATCGCTTATATTGCCTTCCACGCAACCCGAAAGC 191
Query 282 CCAATAGCATTGTCAAGGGAACACTTTCTG--C-ATCAA-C--A-A--T--------C-- 322
| || ||||| ||||| ||||| || |||| | | ||| | | | | |
Sbjct 192 CTAACAGCATCGTCAAAGGAACGCTCTCTGAACAACCAACCGGACATTTCAAGGGGGCAG 251
Query 323 G--AAGGCGGTTGGGCTCCTTTTGATGGACCTGATGGAACAGCCTTGCTTGGGCAGATCG 380
| |||| || ||||||||||| ||||| |||||||||||||| |||||||| || ||||
Sbjct 252 GTAAAGGTGGATGGGCTCCTTTCGATGGTCCTGATGGAACAGCTTTGCTTGGACAAATCG 311
Query 381 ACTTGGCTTTCCTCTCTGTCTATGCGGTTGGGATGTTTGTGGCAGGTCACTTGGGCGATC 440
| |||||||||||| |||| ||||||||||| ||||||||||| ||||| ||||| ||||
Sbjct 312 ATTTGGCTTTCCTCGCTGTTTATGCGGTTGGAATGTTTGTGGCTGGTCATTTGGGTGATC 371
Query 441 GTTTGGATCTCAGGACGTTTCTGACCATCGGTATGATCGGGACCGGCCT-TTTCACAGCT 499
|| |||| |||||||||||||| || || |||||||||||||| || | | | || |||
Sbjct 372 GTCTGGACCTCAGGACGTTTCTAACTATAGGTATGATCGGGACAGGAGTGTGT-ACCGCT 430
Query 500 CTCTTCGGGGTCGCATTCTGGGCGAATTTCCACAGC-TTCTACTATTT-CTTGGCGGTTC 557
|| || || ||||| |||||||| ||| |||| || ||||||||||| ||| ||| |||
Sbjct 431 CTATTTGGAGTCGCTTTCTGGGCAAATATCCA-TGCTTTCTACTATTTCCTT-GCGATTC 488
Query 558 AGGTTA-TGGCGGGGTT-GTTTCAGTCGATAGGTTGGCCTTGTATCGTGGCTGTGCTCGG 615
| | | |||| |||| ||||||||| || || |||||||| | ||||| || | ||
Sbjct 489 A-GACATTGGC-AGGTTGGTTTCAGTCTATTGGATGGCCTTGCGTGGTGGCGGTTTTGGG 546
Query 616 GAATTGGTTCGACAAGAAGAGAAGAGGAATGATTATGGGTGTTTGGAGCGCTCACACTTC 675
||| ||||| || |||||||| |||||| | ||||||||| ||||||| ||||| || ||
Sbjct 547 GAACTGGTTTGATAAGAAGAGGAGAGGAGTCATTATGGGTATTTGGAGTGCTCATACATC 606
Query 676 CCTCGGTAACATTGCA--GGGTCTCTGATCGCGTCTGGGCTGCTT-AGATAT-GGGTGGG 731
| || || | | || ||| || | || ||| | || || || | || | || ||||
Sbjct 607 AATAGGGAATA-T-CATTGGGACTTTAATAGCGACCGGCCT-TTTAAAAT-TCGGTTGGG 662
Query 732 GTTGGTCATTTCTTGG-CCCGGCTTTTCTCATGACTTTTCTTGGGATCGTTG-TTTACCT 789
| ||||| ||| |||| ||| ||||| ||||| || |||||||| || | || |||||||
Sbjct 663 GATGGTCTTTTGTTGGTCCC-GCTTTGCTCATTACGTTTCTTGGCATTG-TGATTTACCT 720
Query 790 TTTCTTGCCGGTGAATCCTCCAACCGTTGAGGCAGAGAGAGATGGAACTGAAATTGACTC 849
|||||||| |||||||| | ||||| | |||||||||||||||||| |||| ||
Sbjct 721 ATTCTTGCCTGTGAATCCAGTTGCTGTTGAATCTGAGAGAGATGGAACTGAAGTTGATTC 780
Query 850 TACCATGAGGCTCGGTGACACCATTACAGAGAGCTTATTGGAA--TCTAGAATGAGTACT 907
|| ||||| ||||||||||||||||||||||| || || || ||||| | |||||||
Sbjct 781 CACAATGAGACTCGGTGACACCATTACAGAGAGTTTCTT--AAGCTCTAGGACGAGTACT 838
Query 908 GGATTCGATAGAAAG-GCAGTCGGGTTCATGGCCGCTTGGAAAATCCCCGGTGTTGCTCC 966
||||||||||| ||| || ||||||||| | ||||| |||||||||||||||||||||||
Sbjct 839 GGATTCGATAG-AAGAGCCGTCGGGTTCTTAGCCGCATGGAAAATCCCCGGTGTTGCTCC 897
Query 967 TTTCGCCTTCTGCCTCTTCTTCAC-AAAGTTGGTCTCATACACTTTCCTCTACTGGCTTC 1025
||||||||| || ||||||||||| ||| |||||||| |||||||||||||| |||||||
Sbjct 898 TTTCGCCTTTTGTCTCTTCTTCACCAAA-TTGGTCTCTTACACTTTCCTCTATTGGCTTC 956
Query 1026 CTTTCTACGTCAGCCACAACATGA--TCGGAGGAGAGTACCTGTCAGAGGAGACATCAGG 1083
||||||| || ||||| | | ||| | ||||||||| | ||||| | |||||||| ||
Sbjct 957 CTTTCTATGTAAGCCAGA-C-TGAGATAGGAGGAGAGCATTTGTCACAAGAGACATCGGG 1014
Query 1084 AAACTTGTCGACAATCTTCGATGTTGGAGGCGTTGTTGGTGGAGTCTTAGCCGGATACAT 1143
|||||| |||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
Sbjct 1015 AAACTTATCGACACTCTTCGATGTTGGAGGCGTTGTTGGAGGAATCTTAGCCGGATATTT 1074
Query 1144 ATCTGATCAACTCAACGGCAGAGCCATCACAGCAGCAGGATTCATGTACTTGGCCATCCC 1203
|||||||| ||| |||| ||||| || ||||| | ||||||||| |||||| | |||||
Sbjct 1075 CTCTGATCAGCTCGACGGGAGAGCAATTACAGCCGGAGGATTCATCTACTTGACAATCCC 1134
Query 1204 AGCTCTTTTCCTCTACAGAGTCTTTGGACACATCTCATTGACCATCAATGTCATCCTCAT 1263
|||||| |||||||||||| ||| || || ||||| |||| |||||| ||||||||||
Sbjct 1135 AGCTCTGTTCCTCTACAGAATCTACGGTCATGTCTCAATGACAATCAATATCATCCTCAT 1194
Query 1264 GTTCACATCAGGAGTCTTCATCATTGGACCATTT-GCTCTCATCACAACAGCTGTCT-CA 1321
||||| | | ||| | || | | |||||| || |||||||||||||| || || | ||
Sbjct 1195 GTTCATAGCTGGATTGTTTGTTAATGGACC-TTACGCTCTCATCACAACTGCGGT-TGCA 1252
Query 1322 GCTGATCTCGGAACCCACAAATCTCTCAAAGGCAATGCAAGGGCTTTGGCTACAGTCTCA 1381
||||||||||| || ||||| || || ||||||||||||||||||||||||||||| |
Sbjct 1253 GCTGATCTCGGTACTCACAAGTCGCTTAAAGGCAATGCAAGGGCTTTGGCTACAGTGACT 1312
Query 1382 GCTATCATAGACGGCACAGGATCCGTCGGTGCTGCGATTGGACCAGTCCTCACTGGTTAC 1441
||||| ||||| || |||||||| || ||||| || |||||||| || || || |||||
Sbjct 1313 GCTATTATAGATGGAACAGGATCAGTTGGTGCAGCTATTGGACCTGTTCTTACAGGTTAT 1372
Query 1442 ATCTCTGCCATAAGCTGGGACGCAGTGTTTTACATGTTGATGACTGCAGCATTGATCTCT 1501
||| |||| || |||||||| || ||||||||||||||||||||||| || |||||||||
Sbjct 1373 ATCGCTGCGATTAGCTGGGATGCTGTGTTTTACATGTTGATGACTGCGGCTTTGATCTCT 1432
Query 1502 GGATTGTTGCTCACTAAACTAATCATAGCAGAAGTCAAAGCGTTATTGTTTGGATCA 1558
|||||||||||||||| || || |||| |||||| ||| | || |||| |||||||
Sbjct 1433 GGATTGTTGCTCACTACGCTTATTATAGAAGAAGTGAAAACTTTGTTGTATGGATCA 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65667582380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5