BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25225.1
Length=374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492310 jgi|Araly1|492310|fgenesh2_kg.7__1743__AT4G25225.1 331 2e-90
> Ahg492310 jgi|Araly1|492310|fgenesh2_kg.7__1743__AT4G25225.1
Length=267
Score = 331 bits (179), Expect = 2e-90
Identities = 208/221 (94%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 42 GGAGAAGAAGATGGGGATAATAAGGAGCAGCTTCTCTTTCATCATGGGAACAGTGTGCGG 101
||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GGAGAAGAAGATGGGAATTATAAGGAGCAGCTTCTCTTTCATCACGGGAACAGTGTGCGG 60
Query 102 GATCTACATCGCTCAGACCTACAACGTCCCTAACATCAAAAAGCTCGGTCACTGCGCCGT 161
||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 61 GATCTACATCGCTCAGAACTACAACGTTCCTAACATCAAGAAGCTTGGTCACTGCGCCGT 120
Query 162 TTCAATGGCCAAGCAAGTTGAGGAGAAATATCGCAAGCCCAAAAGCAGAGACGACGTTT- 220
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCAATGGCCAAGCAAGTTGAGGAGAAATATCGCAAGCCCAAAAGCAGAGACGACGTTTA 180
Query 221 -GACAGA--TTCCACTTAGCAGCTTCTCCGGTGAATTCACC 258
|| ||| |||||||| |||||||||||||||||||||||
Sbjct 181 AGATAGAGATTCCACTT-GCAGCTTCTCCGGTGAATTCACC 220
Score = 87.9 bits (47), Expect = 5e-17
Identities = 47/47 (100%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 284 AATTTTGCTACTTCTTAAGGTTTATGTGTAAATTCAGTGAAATTTGA 330
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 AATTTTGCTACTTCTTAAGGTTTATGTGTAAATTCAGTGAAATTTGA 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13354456150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5