BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25240.1
Length=2236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492307 jgi|Araly1|492307|fgenesh2_kg.7__1740__AT4G25240.1 3094 0.0
Ahg949695 jgi|Araly1|949695|scaffold_801582.1 1783 0.0
> Ahg492307 jgi|Araly1|492307|fgenesh2_kg.7__1740__AT4G25240.1
Length=2097
Score = 3094 bits (1675), Expect = 0.0
Identities = 1946/2069 (94%), Gaps = 49/2069 (2%)
Strand=Plus/Plus
Query 1 GTAAGAAGAAATTCAAAAACCCACACTGACACTTTAACACATTGCTTCGTCTTCTCTACC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAAGAAGAAATTCAAAAACCCACACTGACACTTTAACACATTGCTTCGTCTTCTCTACC 60
Query 61 GTTTCGATTTCACTC-T-T-A--ATTATGTCAAATCCGTAAGCTTTTGTGATCATCAACA 115
||||||| ||||||| | | | |||||||||||||||||||| | | |
Sbjct 61 GTTTCGA-TTCACTCATATAATGATTATGTCAAATCCGTAAGC-----T--T--T----- 105
Query 116 CCaaaaaaaaaaaCCTAACTTTATGGCGGCGACTTGTTCTCTGCTCGCGTCCTTTCTCCT 175
|||||||||||||||||||||||||||||||| | |||| | | || |||||
Sbjct 106 ----AAAAAAAAACCTAACTTTATGGCGGCGACTTG-T-TCTG-T---G---TTCCTCCT 152
Query 176 CTGCTTTGCTCTTCTCTCCGCCGTTTCTTTCGCGGCGGACCCTTTCGTCTCCTACGACTT 235
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 153 CTGCTTTGCTCTTCTCTCCGGCGTGTCTTTCGCGGCGGACCCTTTCGTCTCCTACGACTT 212
Query 236 CAGAGTTTCTTACCTCACTGCTTCTCCCCTCGGCGTTCCTCAACAGGTTATAGCCGTCAA 295
||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 213 CAGGGTTTCTTACATCACCGCTTCCCCCCTCGGCGTTCCTCAACAGGTTATAGCTGTCAA 272
Query 296 TGGGCAGTTTCCAGGACCTCTGCTTAATGCTACTACCAACTACAATGTTGTTGTTAACGT 355
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 273 TGGGCAGTTTCCAGGACCTCTGCTTAATGCCACTACCAACTACAATGTTGTTGTTAACGT 332
Query 356 TTTCAATCATTTGGATGAGCCTCTCCTCTTGACTTGGCCTGGTATCCAAATGCGGCGTAA 415
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 333 TTTCAATCATTTGGATGAGCCTCTCCTCTTGACTTGGCCTGGCATCCAAATGCGGCGTAA 392
Query 416 CTCGTGGCAAGACGGTGTTCTTGGCACAAACTGCCCTATTCCTCCCAGATGGAACTTTAC 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 CTCGTGGCAAGACGGTGTTCTTGGCACAAACTGCCCTATTCCTCCCAGATGGAACTTTAC 452
Query 476 TTACCAATTTCAAGTCAAGGATCAAATTGGAAGCTTTTTCTACTCCCCTTCACTCAACTT 535
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 TTACCAATTTCAAGTGAAGGATCAAATTGGAAGCTTTTTCTACTCCCCTTCACTCAACTT 512
Query 536 TCAGAGAGCATCTGGTGGTTTTGGTCCCATCGTGATTAATAACCGGGACATTATTCCTAT 595
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 513 TCAGAGAGCATCTGGGGGTTTTGGTCCCATCGTGATTAATAACCGTGACATTATTCCTAT 572
Query 596 CCCTTTCCCACAGCCTGATGGTGAACTCATCTTCATTATTGGTGATTGGTACACTCAGGA 655
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 573 CCCTTTCCCACAGCCTGACGGCGAACTCATCTTCATTATTGGTGATTGGTACACTCAGGA 632
Query 656 CCATAAAGCATTAAGGAGAGCACTTGACTCTGGGAAAGAACTTGGGATGCCAGATGGAGT 715
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 633 CCATAAAGCATTAAGGAGAATACTCGACTCTGGGAAAGAACTTGGGATGCCAGATGGAGT 692
Query 716 CCTCATCAATGGGAAGGGTCCTTACAAGTACAACAGTAGTGTACCTGATGGAATTGATTA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 CCTCATCAATGGGAAGGGTCCTTACAAGTACAACAGTAGTGTACCTGATGGAATTGATTA 752
Query 776 CTTAACCTTTCATGTTGAACCAGGGAAAACATACAGAATCCGTGTTCACAATGTTGGGAT 835
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CTTAACCTTTCATGTTGAGCCAGGGAAAACATACAGAATCCGTGTTCACAATGTTGGGAT 812
Query 836 CTCGACAAGCTTGAACTTCAGGATTCAGAACCACAGTTTGCTTTTGGTAGAAACCGAGGG 895
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 813 CTCGACAAGCTTGAACTTCAGGATTCAGAACCACAATTTGCTTTTGGTAGAAACCGAGGG 872
Query 896 TCACTATACTTCACAGGCGAACTTCACTGATTTTGATGTTCATGTAGGACAGTCTTATTC 955
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 873 TCACTATACCTCACAGGCGAACTTTACTGATTTTGATGTTCATGTAGGACAGTCTTATTC 932
Query 956 TTTCTTGGTAACCATGGACCAAGACGCCACAAGTGACTACTACATTGTTGCCAGTGCTAG 1015
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 933 TTTCTTGGTAACCATGGACCAAAACGCCACAAGTGACTACTACATTGTTGCCAGTGCTAG 992
Query 1016 ATTTGTGAATGAAACAGTGTGGCAAAGAGTCACTGGTGTTGCCATTCTCCATTATTCTAA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 ATTTGTGAATGAAACAGTGTGGCAAAGAGTCACTGGTGTTGCCATTCTCCATTATTCTAA 1052
Query 1076 TTCCAAAGGACCTGTTTCTGGTCCTCTACCAGTTCCCAAAACAGATGTTTCTAGCCCGTG 1135
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1053 TTCCAAAGGACCTGTTTCTGGTCCTCTACCAGTTCCAAAAACCGATGTTTCTAGCCCATG 1112
Query 1136 GTCAGCAATGAGCCAGCCGAAGACCATCAGGCAAAACACATCTGCCAGTGGAGCTCGTCC 1195
||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1113 GTCAGCAATGAACCAGCCGAAGGCCATCAGGCAAAACACATCTGCTAGTGGAGCTCGTCC 1172
Query 1196 AAATCCGCAGGGATCATTTCATTATGGTCAAATAAACATCACTAACACATACATTTTGAG 1255
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1173 AAATCCGCAGGGATCATTTCACTATGGTCAAATAAACATCACTAACACATACATTTTGAG 1232
Query 1256 AAGTTTGCCTCCAACAATAATTAACGGGGCACTTCGTGCTACACTTAACGGGATCTCATT 1315
||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1233 AAGTTTGCCTCCAACAACAATTAACGGGGCACTACGTGCTACACTTAATGGGATTTCATT 1292
Query 1316 TGTGAATCCAAGCACTCCAGTGAGGCTTGCGGATCGCAATAAAGTGAAAGGAGCTTATAA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 TGTGAATCCAAGCACTCCAGTGAGGCTTGCGGATCGCAATAAAGTGAAAGGAGCTTATAA 1352
Query 1376 GCTGGACTTCCCTGACAGACCTTTTAATAGACCTCTTCGTTTGGATAGATCTATGATCAA 1435
||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 1353 GCTGGACTTCCCTGATAGACCTTTTAGTAGACCTCCTCGTTTGGACAGATCTATGATCAA 1412
Query 1436 CGCAACATACAAGGGCTTTATACAAGTTGTTTTCCAGAACAATGACACCAAGATCCAGAG 1495
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1413 CGCAACATACAAGGGCTTTATACAAGTTGTTTTCCAGAACAACGACACCAAGATCCAGAG 1472
Query 1496 CTTCCATGTTGATGGCTATTCATTTTTCGTTGTTGGGATGGACTTTGGTATTTGGTCAGA 1555
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1473 CTTCCATGTTGATGGATATTCATTTTTTGTTGTTGGGATGGACTTTGGTATCTGGTCAGA 1532
Query 1556 AGACAAAAAGGGTTCATATAACAACTGGGATGCCATCTCAAGAAGCACAATCGAGGTATA 1615
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1533 AGACAAAAAGGGTTCATATAACAACTATGATGCCATCTCAAGAAGCACAATCAAGGTATA 1592
Query 1616 CCCTGGGGGTTGGACGGCTGTACTGATTTCCCTTGATAATGTCGGAGTTTGGAACATTCG 1675
||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 1593 CCCTGGGGGATGGACGGCTGTACTTATTTCCCTTGATAACGTTGGAGTTTGGAACATTCG 1652
Query 1676 AGTAGAGAATCTTGACAGATGGTATCTTGGTGAAGAAACTTATATGCGGATCACAAACCC 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 AGTAGAGAATCTTGACAGATGGTATCTTGGTGAAGAAACTTATATGCGGATCACAAACCC 1712
Query 1736 CGAGGAGGATGGAAAGACAGAGATGGATCCTCCTGACAATGTCCTATACTGTGGTGCTCT 1795
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1713 CGAAGAGGATGGAAAGACAGAGATGGATCCTCCTGACAATGTCCTTTACTGTGGTGCCCT 1772
Query 1796 TAAGAACTTGCAGAAGGAACAACACCACTCAGCTGCAACATCTATACTAAATGGACACTT 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 TAAGAACTTGCAGAAGGAACAACACCACTCAGCTGCAACATCTATACTAAATGGACACTT 1832
Query 1856 GAAGCTAATGCTACTAATGGTGTTGCTCGCCTCGGTGT-TCAGATTTTGCTGAGCATTTT 1914
||||||||||||| || | |||| ||||||||||| | | | |||||||| ||| ||||
Sbjct 1833 GAAGCTAATGCTAATA--G-TGTTACTCGCCTCGGT-TATGACATTTTGCTAAGCCTTTT 1888
Query 1915 TACATCTTTATGTTGATCGACCC-AGGGAAGT-GAAGTTAAATGATTTTTAGATTTATTT 1972
||||||||| || | || ||| | || || |||||||||| |||||||||||||
Sbjct 1889 TACATCTTTCTGCCGGG-GAAGTGAGGTA-GTAGACGTTAAATGATATTTAGATTTATTT 1946
Query 1973 ATCCC-A------ATGGATGTGAAAAACTCTTGGTTCTTTCGTTGTTTTAGGCCAAAATG 2025
||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1947 ATCCCCATGGGCCATGGATGTGAACAACTCTTGGTTCTTTTGTTGTTTTAGGCCAAAATG 2006
Query 2026 GTTTAGAATCTTGTCAATTGTAATGGAAA 2054
|||||| ||||| |||||||||||| |||
Sbjct 2007 GTTTAGCATCTTCTCAATTGTAATGAAAA 2035
> Ahg949695 jgi|Araly1|949695|scaffold_801582.1
Length=1825
Score = 1783 bits (965), Expect = 0.0
Identities = 1516/1777 (85%), Gaps = 57/1777 (3%)
Strand=Plus/Plus
Query 167 CTTTC-TCCTCTGCTTTGCTCTTCTCTCCGCCGTT-TCTTTCGC-GGCGGACCCTTTCGT 223
||||| || ||| ||| |||||||||| || | || |||||||| || || |||| |||
Sbjct 52 CTTTCGTCTTCTCCTTCGCTCTTCTCTTCGGC-TTCTCTTTCGCTGG-TGATCCTTACGT 109
Query 224 CTCCTACGACTTCAGAGTTTCTTACCTCACTGCTTCTCCCCTCGGCGTTCCTCAACAGGT 283
|| ||||| ||||| ||||| ||| |||| |||||||| ||||| ||||||||||||||
Sbjct 110 ATCTTACGATTTCAGTGTTTCGTACATCACAGCTTCTCCTCTCGGTGTTCCTCAACAGGT 169
Query 284 TATAGCCGTCAATGGGCAGTTTCCAGGACCTCTGCTTAATGCTACTACCAACTACAATGT 343
|||||| ||||||||| | |||||||| ||| || ||||||||||||| |||||||||||
Sbjct 170 TATAGCAGTCAATGGGAAATTTCCAGGTCCTGTGATTAATGCTACTACAAACTACAATGT 229
Query 344 TGTTGTTAACGTTTTCAATCATTTGGATGAGCCTCTCCT-CTTGACTTGGCCTGGTATCC 402
|| ||||||||| |||||||||||||||||||||||| | ||| |||||||||||| | |
Sbjct 230 TGATGTTAACGTATTCAATCATTTGGATGAGCCTCTCTTACTT-ACTTGGCCTGGTGTTC 288
Query 403 AAATGCGGCGTAACTCGTGGCAAGACGGTGTTCTTGGCACAAACTGCCCTATTCCTCCCA 462
| ||||||||||||||||||||||||||||||||||| |||||||| || ||||| || |
Sbjct 289 AGATGCGGCGTAACTCGTGGCAAGACGGTGTTCTTGGAACAAACTGTCCAATTCCACCGA 348
Query 463 GATGGAACTTTACTTACCAATTTCAAG-TCAAGGATCAAATTGGAAGCTT-TTTCTACTC 520
||||||||| ||||| | |||| || | || ||||| |||||||| || |||||||||
Sbjct 349 AATGGAACTTCACTTATGATTTTC-AGTTGAAAGATCAGATTGGAAG-TTATTTCTACTC 406
Query 521 CCCTTCACTCAACTTTCAGAGAGCATCTGGTGGTTTTGGTCCCATCGTGATTAATAACCG 580
|||||||| ||||| |||||||| ||||||||||||||| | ||| | || ||||||||
Sbjct 407 TCCTTCACTTAACTTCCAGAGAGCCTCTGGTGGTTTTGGTTCAATCATAATCAATAACCG 466
Query 581 GGACATTATTCCTATCCCTTTC-CCACAGCCTGATGGTGAACTCATCTTCATTATTGGTG 639
||| | |||||||||| ||| | | |||||||||||||| ||||||| ||||||||||
Sbjct 467 AGACCTCGTTCCTATCCCGTTCACTA-AGCCTGATGGTGAAATCATCTTTATTATTGGTG 525
Query 640 ATTGGTACACTCAGGACCATAAAGCATTAAGGA-GAGCACTTGACTCTGGGAAAGAACTT 698
||||||| |||||| |||||| ||| ||||||| || |||||||||||| |||||||||
Sbjct 526 ATTGGTATACTCAGAACCATACAGCTTTAAGGAGGA-TACTTGACTCTGGTAAAGAACTT 584
Query 699 GGGATGCCAGATGGAGTCCTCATCAATGGGAAGGGTCCTTACAAGTACAACAGTAGTGTA 758
|||||||| |||||||| |||||||||||||| ||||||| ||||||||| || |||||
Sbjct 585 GGGATGCCGGATGGAGTGCTCATCAATGGGAAAGGTCCTTTCAAGTACAATAGCAGTGTT 644
Query 759 CCTGATGGAATTGATTAC-T-TAACCTTTCATGTTGAACCAGGGAAAACATACAGAATCC 816
|||||||||||||| || | |||| || ||||||| |||||||| |||||||| ||||
Sbjct 645 CCTGATGGAATTGA--ACATGAAACCGTTAATGTTGATCCAGGGAAGACATACAGGATCC 702
Query 817 GTGTTCACAATGTTGGGATCTCGACAAGCTTGAACTTCAGGATTCAGAACCACAGTTTGC 876
| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 703 GCGTTCACAATGTTGGTATCTCGACAAGCTTGAACTTCAGGATTCAGAACCACAAATTGC 762
Query 877 TTTTGGTAGAAACCGAGGGTCACTATACTTCACAGGCGAACTTCACTGATTTTGATGTTC 936
| ||| | || || ||||||| ||| || || || |||||||| ||||| ||| |||
Sbjct 763 TCTTGATTGAGACTGAGGGTCGCTACACCTCCCAAATAAACTTCACCGATTTCGATATTC 822
Query 937 ATGTAGGACAGTCTTATTCTTTCTTGGTAACCATGGACCAAGACGCCACAAGTGACTACT 996
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 823 ATGTGGGACAGTCTTATTCTTTCTTGGTAACCATGGACCAAAACGCCACAAGTGATTACT 882
Query 997 ACATTGTTGCCAGTGCTAGATTTGTGAATGAAACAGTGTGGCAAAGAGTCACTGGTGTTG 1056
||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 883 ACATTGTGGCGAGTGCTAGATTTGTTAATGAAACAGTGTGGCAAAGAGTCACAGGTGTTG 942
Query 1057 CCATTCTCCATTATTCTAATTCCAAAGGACCTGTTTCTGGTCCTCTACCAGTTCCCA-AA 1115
||||||||||||||| |||||||||||||||| |||||||||| | |||||| ||| |
Sbjct 943 GCATTCTCCATTATTCCAATTCCAAAGGACCTGCTTCTGGTCCTTTGCCAGTT-CCAGCA 1001
Query 1116 ACAGATGTTTCT-AGCCCGTGGTCAGCAATGAGCCAGCCGAAGA-CCATCAGGCAAAACA 1173
|| ||||||||| | ||| ||||| ||||||| ||| || |||| |||| | ||||||||
Sbjct 1002 ACTGATGTTTCTCA-CCCTTGGTCCGCAATGAACCAACC-AAGAGCCATAAAGCAAAACA 1059
Query 1174 CATCTGCCA-GTGGAGCTCGTCCAAATCCGCAGGGATCATTTCATTATGGTCAAATAAAC 1232
|||||| || |||||||||||||||||||||| ||||||||||| || || || |||||
Sbjct 1060 CATCTG-CAGGTGGAGCTCGTCCAAATCCGCAAGGATCATTTCACTACGGACAGATAAAT 1118
Query 1233 ATCACTAA-CACATACATTTTGAGAAGTTTGCCTCCAACA-ATAATTAACGGGGCACTTC 1290
||||| || ||||||||| ||||| ||||||||||||||| | ||| || ||| | |||
Sbjct 1119 ATCAC-AAGCACATACATCTTGAGGAGTTTGCCTCCAACAGA-AATCAATGGGAAAATTC 1176
Query 1291 GTGCTACACTTAACGGGATCTCATTTGTGAATCCAAGCA-CTCCAGTGAGGCTTGCGGAT 1349
||||||| ||||| ||||| |||||||| |||||||||| | ||| |||||||||| |||
Sbjct 1177 GTGCTACGCTTAATGGGATTTCATTTGTCAATCCAAGCACCCCCA-TGAGGCTTGCAGAT 1235
Query 1350 CGCAATAAAGTGAAAGGAGCTTATAAGCTGGACTTCCCTGACAGA-C-CTT--TTAATAG 1405
| | ||||||||||||||| ||||||||| || ||||| |||||| | ||| | || ||
Sbjct 1236 CACCATAAAGTGAAAGGAGATTATAAGCTAGATTTCCCAGACAGACCACTTGATGAA-AG 1294
Query 1406 ACCTCTTCGTTTGGATAGATCTATGATCAACGCAACATACAAGGGCTTTATACAAGTTGT 1465
|| || ||| |||| || ||||| ||||||||| ||||||||||||||||||||||| |
Sbjct 1295 ACATCAACGTATGGACAGCTCTATCATCAACGCATCATACAAGGGCTTTATACAAGTTAT 1354
Query 1466 TTTCCAGAACAATGACACCAAGATCCAGAGCTTCCATGTTGATGGCTATTCATTTTTCGT 1525
|||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||
Sbjct 1355 CTTCCAGAACAATGACACCAAAATCCAGAGCTTCCATATTGATGGATATTCATTTTACGT 1414
Query 1526 TGTTGGGATGGACTTTGGTATTTGGTCAGAAGACA-AAAAGGGTTCATATAACAACTGGG 1584
|||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||
Sbjct 1415 GGTTGCAATGGACTTTGGTATATGGTCAGAAGACAGAAAA-GGTTCATATAACAACTGGG 1473
Query 1585 ATGCCATCT-CAAGAAGCACAATCGAGGTATACCCTGGGGGTTGGACGGCTGTAC-TGAT 1642
|||| || | || ||||||| |||||||| || || |||| ||||| ||||||| || |
Sbjct 1474 ATGCAAT-TGCACGAAGCACGATCGAGGTTTATCCAGGGGCATGGACTGCTGTACTTG-T 1531
Query 1643 TTCCCTTGATAATGTCGGAGTTTGGAACATTCGAGTAGAGAATCTTGACAGATGGTATCT 1702
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 TTCCCTCGATAATGTTGGAGTTTGGAACATTCGAGTAGAGAATCTTGACAGATGGTATCT 1591
Query 1703 TGGTGAAGAAACTTATATGCGGATCACAAACCCCGAGGAGGATGGAAAG-ACAGAGATGG 1761
|||||||||||| || ||||| || |||||||||||| | |||| | ||||| ||||
Sbjct 1592 TGGTGAAGAAACATACATGCGAATTGTAAACCCCGAGGAAAACGGAA-GTACAGAAATGG 1650
Query 1762 ATCCTCCTGACAATGTCCTATACTGTGGTGCTCTTAAGAACTTGCAGAAGGAACAACA-C 1820
|||| ||| | ||||| || ||||||||||||||| || | |||| ||||||||||| |
Sbjct 1651 ATCCGCCTCAAAATGTTCTGTACTGTGGTGCTCTTCAGGCCATGCAAAAGGAACAACATC 1710
Query 1821 -CA-CTCAGCTGCAACATCTATACTAAATGGACACTTGAAGCTAATGCT-A-C-TAATGG 1875
|| ||| |||| |||||| |||||||||||||| ||||| ||||| | | | | |||
Sbjct 1711 ACAGCTCTGCTGGAACATCAATACTAAATGGACAGTTGAAACTAATTTTCAGCATGATGA 1770
Query 1876 TGTT---GCTCGCCTCGGTGTTCAGA-TTTTGCTGAG 1908
|||| |||||||||||| ||||| ||||||||||
Sbjct 1771 TGTTTTTGCTCGCCTCGGT-TTCAGCCTTTTGCTGAG 1806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84179441450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5