BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25250.1
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945569 jgi|Araly1|945569|scaffold_701798.1 905 0.0
> Ahg945569 jgi|Araly1|945569|scaffold_701798.1
Length=641
Score = 905 bits (490), Expect = 0.0
Identities = 585/631 (93%), Gaps = 6/631 (1%)
Strand=Plus/Plus
Query 63 AACAAAACATGTTGCGTTTCGTGGTACTCTCTCTAACTCTCATGGTTTTCATCAACTCAT 122
||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 15 AAC-AAACATGTCGCGTTTCGTGATACTCTCTCTAACTCTCATGGTTTTCATCAACTCAT 73
Query 123 CAAACTTTCCAAAGACAGCAGCCACCCCACCAGGCACGTACCAAAACCACACAACGTACG 182
||| ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 74 CAAGCTTTCCAAATACAGTAGCCACTCCACCAGGCACGTACCAAAACCACACAACGTACG 133
Query 183 TAAAAACGGCATGCAACTCAACAACATACCCTACAATGTGCTACAACT-GTCTGTCCTCC 241
|||||||||||||||| ||||||||||| |||| |||||||| |||| | |||||||
Sbjct 134 TAAAAACGGCATGCAATTCAACAACATATCCTATGATGTGCTATAACTCAT-TGTCCTCT 192
Query 242 TATTCCTCCACCATCAAGTCCGACCCAATCAAACTATGCACAACATCGCTAAATCTCAAC 301
|| ||| ||||||||||||| |||||||||||||| ||||||||||| || || ||||||
Sbjct 193 TACTCCGCCACCATCAAGTCTGACCCAATCAAACTTTGCACAACATCACTCAACCTCAAC 252
Query 302 GTCAAATCCGCTAAAAACGCCACATTAGTCGTCTCTAACCTTCTCCAAAAGGCCAAAGCC 361
|||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||
Sbjct 253 GTCAAATCGGCTAAAAATTCCACATTAGTTGTCTCTAACCTTCTCCAAAAGGCTAAAGCC 312
Query 362 GCGAAAAGCCATGAGGTCTCGATCCTTAAGGACTGCGTGGACGAGATGAAGGACACTATC 421
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 313 GCCAAAAGCCACGAGGTCTCGATCCTTAAAGACTGCGTGGACGAGATGAAGGACACTATC 372
Query 422 GACGAGCTTAAGCAAGCGGTCGCCGAGATGAAGTATGTCAGAGGCGGAGGGAAAACTACG 481
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 373 GACGAGCTTAAGCAAGCGGTCGCCGAGATGAAGTATGTCAGAGGCCGAGGAAAAACTACG 432
Query 482 GAGGAGCATTTAAAGAACGTGAAGACGTGGGTGAGCTCGGCTTTGACCGACGAGGGCACG 541
|||||||||||||||||||||| ||||||||||||||| || |||||| |||||||||||
Sbjct 433 GAGGAGCATTTAAAGAACGTGATGACGTGGGTGAGCTCTGCGTTGACCTACGAGGGCACG 492
Query 542 TGTACGGACGGATTCGAGGAAGGGAGAGTAAATGTGGAAACAAAGAAGAAGGTGAAGAAG 601
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 493 TGTACGGACGGATTCGAGGAAGGGAAAGTAAATGTGGAAACAAAGAAGAAGGTGAAGAAG 552
Query 602 GCTATTTCTGAGCTTTCAAAGACTACAAGCAATACTTTAGCCCTTCTTACTCATTATTTA 661
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GCTGTTTCTCAGCTTTCAAAGACTACAAGCAATACTTTAGCCCTTCTTACTCATTATTTA 612
Query 662 AGTTATTGAAATAATATCCATTA-ATTTCAC 691
||||| ||| ||||||||||| ||| |||
Sbjct 613 AGTTACTGATG-AATATCCATTATATT-CAC 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30002735679
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5