BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25260.1 Length=949 Score E Sequences producing significant alignments: (Bits) Value Ahg945568 jgi|Araly1|945568|scaffold_701797.1 981 0.0 > Ahg945568 jgi|Araly1|945568|scaffold_701797.1 Length=649 Score = 981 bits (531), Expect = 0.0 Identities = 605/642 (94%), Gaps = 0/642 (0%) Strand=Plus/Plus Query 28 CATTTGTGTTTTAAATCTAAAATGGCTAGAAATTTCGAGCTTTCTTTGATTCTCTTTGTT 87 ||||||||||| |||| |||||||| |||| |||| | ||||||||||||||||||||| Sbjct 3 CATTTGTGTTTGGAATCCAAAATGGCAAGAAGTTTCAACCTTTCTTTGATTCTCTTTGTT 62 Query 88 CTGTATCTGTCCACTGCAGCAATAGTCATGGCTAGAAACCTTGAAGAGGAATCAAGTGGT 147 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 63 CTGTATCTGTCCACTGCAGCAATAGCCATGGCCAGAAACCTTGAAGAGGAATCAAGTGGT 122 Query 148 GATACAGAGTTCATTAAAGCCTCTTGTGAGACGACGTCGTACCCAGACCGATGCTTCCAG 207 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 123 GATACGGAGTTCATTAAAGCCTCTTGTGAGACGACGTCGTACCCGGACCGATGCTTCCAG 182 Query 208 TCTCTGTCTTCATATGCAAGCGAGATCAAGAAGCAGCCACGTAAGCTTGCTGAGACCGCG 267 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 183 TCCCTGTCTTCATATGCAAGCGAGATCAAGAAGCAGCCACGTAAGCTTGCTGAGACAGCA 242 Query 268 CTTGCCGTTAGCATAGCCCGAGCAAAGTCAGCCAAAACCTATGTATCAGAGATGACTGAT 327 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 243 CTTGCCGTTAGCATAGCCCGAGCAAAGTCAGCCAAAACCTATGTCTCAGAGATAACTGAC 302 Query 328 TATAAAGGAATCACAAAGAGGCAGCACGAGGCTGTAGCGGACTGTCTAGAGGAGATGGGA 387 ||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 303 TATAAGGGAATCACAAAGAGGCAGCACGAGGCTGTAGCAGACTGTGTAGAGGAGATGGGA 362 Query 388 GACACTGTTGACAGGTTGAGCAATTCGCTGAAGGAACTGAAGCATCTGGAGGAAGGTGAC 447 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 363 GACACTGTTGACAGGTTGAGCAACTCGCTGAAGGAACTGAAGCATCTGGAGGAAGGTGAC 422 Query 448 AGCGGAGAAGACTTTTGGTTCTGTCTGAGCAATGTCCGGACGTGGACAAGCGCAGCACTG 507 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 423 AGCGGAGAAGAGTTTTGGTTCTGTCTGAGCAATGTCCGGACGTGGACAAGCGCGGCTCTG 482 Query 508 ACAGATGAGACCGCGTGTATGGATGGGTTTGGAGGGAAGGCCATGGCTGGGGAGCTGAAA 567 |||||||||||| | ||| | ||||||||||||||||| |||||| ||||||||||||| Sbjct 483 ACAGATGAGACCACATGTCTTGATGGGTTTGGAGGGAAAGCCATGAATGGGGAGCTGAAA 542 Query 568 AGTTTAATCAGAACACACATTGTGAGTGTTGCGGAAGAGACGAGCAATGCCTTGGCTTTG 627 || ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || Sbjct 543 AGCTTAATCAGAACACGCATTGTGAGTGTGGCGGAAGAGACGAGCAATGCCTTGGCTCTG 602 Query 628 ATCAATGACTTTGCTTCCAAGCATTGAAATCATTTCAAAGGG 669 ||||||||||||||||||||||||||||| ||| |||||||| Sbjct 603 ATCAATGACTTTGCTTCCAAGCATTGAAAACATATCAAAGGG 644 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35225575308 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5