BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25260.1
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945568 jgi|Araly1|945568|scaffold_701797.1 981 0.0
> Ahg945568 jgi|Araly1|945568|scaffold_701797.1
Length=649
Score = 981 bits (531), Expect = 0.0
Identities = 605/642 (94%), Gaps = 0/642 (0%)
Strand=Plus/Plus
Query 28 CATTTGTGTTTTAAATCTAAAATGGCTAGAAATTTCGAGCTTTCTTTGATTCTCTTTGTT 87
||||||||||| |||| |||||||| |||| |||| | |||||||||||||||||||||
Sbjct 3 CATTTGTGTTTGGAATCCAAAATGGCAAGAAGTTTCAACCTTTCTTTGATTCTCTTTGTT 62
Query 88 CTGTATCTGTCCACTGCAGCAATAGTCATGGCTAGAAACCTTGAAGAGGAATCAAGTGGT 147
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 63 CTGTATCTGTCCACTGCAGCAATAGCCATGGCCAGAAACCTTGAAGAGGAATCAAGTGGT 122
Query 148 GATACAGAGTTCATTAAAGCCTCTTGTGAGACGACGTCGTACCCAGACCGATGCTTCCAG 207
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 123 GATACGGAGTTCATTAAAGCCTCTTGTGAGACGACGTCGTACCCGGACCGATGCTTCCAG 182
Query 208 TCTCTGTCTTCATATGCAAGCGAGATCAAGAAGCAGCCACGTAAGCTTGCTGAGACCGCG 267
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 183 TCCCTGTCTTCATATGCAAGCGAGATCAAGAAGCAGCCACGTAAGCTTGCTGAGACAGCA 242
Query 268 CTTGCCGTTAGCATAGCCCGAGCAAAGTCAGCCAAAACCTATGTATCAGAGATGACTGAT 327
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 243 CTTGCCGTTAGCATAGCCCGAGCAAAGTCAGCCAAAACCTATGTCTCAGAGATAACTGAC 302
Query 328 TATAAAGGAATCACAAAGAGGCAGCACGAGGCTGTAGCGGACTGTCTAGAGGAGATGGGA 387
||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 303 TATAAGGGAATCACAAAGAGGCAGCACGAGGCTGTAGCAGACTGTGTAGAGGAGATGGGA 362
Query 388 GACACTGTTGACAGGTTGAGCAATTCGCTGAAGGAACTGAAGCATCTGGAGGAAGGTGAC 447
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 363 GACACTGTTGACAGGTTGAGCAACTCGCTGAAGGAACTGAAGCATCTGGAGGAAGGTGAC 422
Query 448 AGCGGAGAAGACTTTTGGTTCTGTCTGAGCAATGTCCGGACGTGGACAAGCGCAGCACTG 507
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 423 AGCGGAGAAGAGTTTTGGTTCTGTCTGAGCAATGTCCGGACGTGGACAAGCGCGGCTCTG 482
Query 508 ACAGATGAGACCGCGTGTATGGATGGGTTTGGAGGGAAGGCCATGGCTGGGGAGCTGAAA 567
|||||||||||| | ||| | ||||||||||||||||| |||||| |||||||||||||
Sbjct 483 ACAGATGAGACCACATGTCTTGATGGGTTTGGAGGGAAAGCCATGAATGGGGAGCTGAAA 542
Query 568 AGTTTAATCAGAACACACATTGTGAGTGTTGCGGAAGAGACGAGCAATGCCTTGGCTTTG 627
|| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 543 AGCTTAATCAGAACACGCATTGTGAGTGTGGCGGAAGAGACGAGCAATGCCTTGGCTCTG 602
Query 628 ATCAATGACTTTGCTTCCAAGCATTGAAATCATTTCAAAGGG 669
||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 603 ATCAATGACTTTGCTTCCAAGCATTGAAAACATATCAAAGGG 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35225575308
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5