BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25270.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354257 jgi|Araly1|354257|fgenesh1_pg.C_scaffold_7001430 2368 0.0
> Ahg354257 jgi|Araly1|354257|fgenesh1_pg.C_scaffold_7001430
Length=2277
Score = 2368 bits (1282), Expect = 0.0
Identities = 1441/1519 (95%), Gaps = 6/1519 (0%)
Strand=Plus/Plus
Query 69 GAAACCCAGACATCACCAACAGTTGAAGCAACACAGACAAAACCAATACAACAACAATGG 128
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 762 GAAACCCAGACATCACCAACAGTTGAAGCAACACAGACAAAATGAATACAACAACAGTGG 821
Query 129 ATTCACTTCCCTCTCTTTCACCAAACCATCCCCCACTCCTCTCTTGATCGAAAAACAATC 188
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 822 ATTCACTTCCCTCTCTTTCACCAAACCATCCCCCACTCCTCTCTTGATCGGAAAACAATC 881
Query 189 CATTCACCGGACCCAACTCGAAGCTTTAGACTCTGTCATTACAGACCTCGAAACCTCCGC 248
||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 882 GATTCACCGGACCCAACTCGAAGCCTTAGACTCCGTCATAACAGACCTCGAAACCTCCGC 941
Query 249 TCAAAAAGGCATCTCATTAACCGAACCAGAGATCTTCGCTTCTCTTCTCGAGACCTGCTA 308
||||||||| |||||| | |||||||||||||||||||||||||||||||| || |||||
Sbjct 942 TCAAAAAGGTATCTCAATCACCGAACCAGAGATCTTCGCTTCTCTTCTCGAAACTTGCTA 1001
Query 309 CAGCTTAAGAGCTATTGACCATGGCGTTAGAGTTCATCACCTTATACCTCCCTATCTCTT 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1002 CAGCTTAAGAGCTATTGACCATGGCGTTAGAGTTCATCACCTTATACCTCCCTACCTCTT 1061
Query 369 GCGGAACAACCTGGGGATTTCATCGAAGCTTGTTAGACTCTACGCCTCTTGTGGCTACGC 428
||| || ||| |||| ||||| |||||||| ||||| || || || ||||||||||||||
Sbjct 1062 GCGCAATAACGTGGGAATTTCGTCGAAGCTGGTTAGGCTATATGCGTCTTGTGGCTACGC 1121
Query 429 GGAAGTTGCACACGAAGTGTTCGATCGAATGTCTAAGAGAGACTCATCGCCTTTTGCTTG 488
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1122 GGAGGTTGCACACGAGGTGTTCGATCGAATGTCTAAGAGAGAATCATCGCCTTTTGCTTG 1181
Query 489 GAACTCTCTTATCTCAGGCTACGCTGAATTGGGTCAGTACGAAGACGCCATGGCTCTTTA 548
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1182 GAACTCTCTTATCTCAGGTTACGCTGAATTGGGTCAGTACGAAGACGCCATGGCTCTCTA 1241
Query 549 CTTTCAGATGGCTGAAGACGGCGTGAAACCAGACCGGTTCACATTT-CCACGTGTTTTAA 607
|||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||
Sbjct 1242 CTTTCAGATGGCTGAAGACGGCGTGAAACCAGACCGCTTCAC-TTTCCCACGCGTTTTAA 1300
Query 608 AGGCTTGTGGAGGAATTGGGTCTGTTCAAATTGGAGAAGCGATTCACCGTGATTTGGTTA 667
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1301 AGGCTTGTGGAGGAATTGGGTCTGTTCAAATTGGAGAAGCAATTCACCGTGATTTGGTTA 1360
Query 668 AGGAAGGTTTTGGATACGATGT-CTATGTGCTCAATGCTCTTGTTGTTATGTATGCGAAA 726
||| ||| || ||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 1361 AGGCAGGATTCGGATACGATGTAC-ATGTGCTCAATGCTCTTGTTGATATGTATGCGAAA 1419
Query 727 TGCGGCGACATTGTTAAAGCGAGGAATGTTTTTGACATGATTCCTCACAAAGACTATGTT 786
|||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 1420 TGCGGCGACATTGTTAAAGCAAGGAATGTTTTCGACATGATTCCTAACAAAGACTATGTT 1479
Query 787 TCTTGGAACTCCATGTTGACTGGTTACCTTCATCATGGCTTGTTACACGAGGCATTGGAC 846
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1480 TCTTGGAACTCCATGTTGACTGGATACCTTCATCATGGCTTGTTACACGAGGCGTTGGAC 1539
Query 847 ATTTTTCGTCTAATGGTTCAGAATGGGATTGAGCCTGATAAGGTTGCTATCTCCAGTGTT 906
|||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1540 ATTTTTCGTCAAATGGTTCAAAATGGGATTGATCCTGATAAGGTTGCTATCTCCAGTGTT 1599
Query 907 CTAGCTCGTGTTTTGTCTTTCAAGCATGGACGTCAGCTACATGGATGGGTAATTAGGCGA 966
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1600 CTAGCTCGTGTTTTGTCTTTCAAGCATGGACGACAGTTACATGGATGGGTAATTAGGCGA 1659
Query 967 GGCATGGAGTGGGAGTTATCGGTTGCGAATGCTTTGATTGTTCTATACTCCAAAAGGGGA 1026
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 GGAATGGAGTGGGAGTTATCGGTTGCGAATGCTTTGATTGTTCTATACTCCAAAAGGGGA 1719
Query 1027 CAGTTGGGTCAAGCCTGCTTCATATTT-GATCAGATGCTCGAGAGAGATACCGTATCTTG 1085
|| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1720 CAATTGGGTCAAGCCTGCTTCAT-TTTCGATCAGATGCTCGAGAGAGATACCGTATCTTG 1778
Query 1086 GAATGCTATTATCTCTGCTCATTCTAAAAATTCTAATGGTTTAAAGTATTTTGAGCAGAT 1145
||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1779 GAATGCTATCATCTCTGCTCATTCTAAAGATTCTAATGGTTTCAAGTATTTTGAGCAGAT 1838
Query 1146 GCACCGTGCTAATGCTAAACCAGATGGTATCACGTTTGTCTCGGTTTTATCTCTCTGTGC 1205
||| | |||| |||||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct 1839 GCAACATGCTGATGCTAAACCTGATGGTATCACGTTTGTCTCTGTTCTATCTCTCTGTGC 1898
Query 1206 TAATACAGGAATGGTCGAAGATGGAGAGAGGTTGTTCTCTTTGATGTCAAAGGAATACGG 1265
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1899 TAATACAGGAATGGTCGAAGATGGAGAGAGACTGTTCTCTTTGATGTCAAAGGAATACGG 1958
Query 1266 GATAGACCCGAAGATGGAACACTATGCGTGTATGGTGAATCTCTACGGAAGAGCAGGGAT 1325
|||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1959 GATAAACCCAAAGATGGAACACTATGCGTGCATGGTGAATCTCTACGGAAGAGCAGGGAT 2018
Query 1326 GATGGAAGAGGCTTACTCAATGATTGTTCAAGAGATGGGGCTTGAGGCTGGTCCAACTGT 1385
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| ||
Sbjct 2019 GATGGAAGAGGCTTACTCAATGATTGTTCAAGAAATGGAGTTTGAGGCTGGTCCAACCGT 2078
Query 1386 TTGGGGAGCTCTGTTATACGCTTGTTACCTCCATGGAAATACAGATATAGGAGAGGTTGC 1445
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 2079 TTGGGGAGCTTTGTTATACGCTTGTTACCTCCACGGAAATACAGATATAGGAGAGGTTTC 2138
Query 1446 TGCTCAACGTCTTTTCGAATTAGAACCTGATAACGAACACAATTTCGAGCTGTTGATAAG 1505
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2139 TGCTCAACGTCTTTTCGAATTAGAACCTGATAACGAACATAATTTCGAGCTGTTGATGAG 2198
Query 1506 AATTTATAGCAAAGCAAAAAGAGCAGAGGATGTTGAGAGAGTAAGGCAGATGATGGTGGA 1565
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2199 AATTTATAGCAAAGCAAAAAGAGCAGAGGATGTTGAGAGAGTAAGGCAGATGTTGGTGGA 2258
Query 1566 TAGAGGATTGGAGACATAA 1584
|||||||||||||||||||
Sbjct 2259 TAGAGGATTGGAGACATAA 2277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5