BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25300.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492303 jgi|Araly1|492303|fgenesh2_kg.7__1736__AT4G25300.1 1554 0.0
Ahg920607 jgi|Araly1|920607|scaffold_101888.1 917 0.0
> Ahg492303 jgi|Araly1|492303|fgenesh2_kg.7__1736__AT4G25300.1
Length=1130
Score = 1554 bits (841), Expect = 0.0
Identities = 1017/1102 (92%), Gaps = 12/1102 (1%)
Strand=Plus/Plus
Query 66 GATTAT-TTCTTAAGAAGAAGCGGCCATGGAA-GTCAAAGGAGCAACCCGGAGCTCTATC 123
|||||| || | |||||||||||||||||||| |||||| ||||||||| ||||||||
Sbjct 2 GATTATCTT-TCAAGAAGAAGCGGCCATGGAAGGTCAAA-GAGCAACCCAAAGCTCTATT 59
Query 124 ATAGTTCCTTCTGTTCAAGAGATGGTGAAGGAGAAGATGATCACGACGGTTCCTCCGAGG 183
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||
Sbjct 60 ATAGTTCCTTCTGTTCAAGAGATGGTGAAGGAGAATATGATCACGGCGGTTCCTCCGTGG 119
Query 184 TATGTACGGTCTGATCAAGACGTAGCTGAGATAGCCGTTGATTCTGGTCTAAGAAACCAG 243
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 120 TATGTACGGTCTGATCAAGACAAAGCTGAGATAGCCGTGGATTCTGGTCTAAGAAACCAG 179
Query 244 ATCCCAATCATAGACATGAGTCTTCTGTGTTCTTCAACCTCCATGGATTCTGAGATTGAC 303
||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 180 ATCCCAATCATAGACATGAGTCTTCTGTGTTCTCCAACCTGCATGGATTCTGAGACTGAC 239
Query 304 AAGCTTGACTCTGCTTGCAAAGAGTGGGGATTTTTTCAGCTTGTAAACCATGGAATGGAG 363
||||| |||| |||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 240 AAGCTCGACTTTGCTTGCAAAGAATGGGGATTTTTCCAGCTTGTAAACCATGGAATGGAC 299
Query 364 TCAAGTTTCTTGAACAAAGT-AAAGTCAGAGGTTCAAGACTTCTTCAACCTTCCCATGGA 422
|||||||||||| ||||| | ||| ||||| ||||||| ||||||||||||||||||||
Sbjct 300 TCAAGTTTCTTGGACAAATTCAAAA-CAGAGATTCAAGATTTCTTCAACCTTCCCATGGA 358
Query 423 AGAGAAGAAGAATTTGTGGCAACAACCCGATGAGATCGAAGGGTTTGGACAAG-TATTTG 481
|||||| ||||| ||||||||||||||| ||| || |||||||||||||||| | ||||
Sbjct 359 AGAGAAAAAGAAGCTGTGGCAACAACCCGGTGATATAGAAGGGTTTGGACAAGCT-TTTG 417
Query 482 TGGTTTCAGAAGAGCAGAAACTCGATTGGGCAGATATGTTCTTCCTTACAATGCAACCTG 541
| |||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 418 TAGTTTTAGAAGAGCAGAAACTCGATTGGGCAGACATGTTCTTCCTTACCATGCAACCTG 477
Query 542 TTCGATTACGCAAGCCTCACTTGTTCCCCAAGTTACCTCTGCCCTTTAGAGATACACTAG 601
||| ||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 478 TTCAATTGCGCAAGCCTCACTTGTTTCCCAAGTTACCTCTTCCCTTCAGAGATACACTAG 537
Query 602 ACATGTATTCGGCTGAAGTGAAAAGCATTGCTAA-GATCTTACTTGGGAAAATAGCG-GT 659
| |||||||||||||||||||||||||| ||||| | ||||| ||| |||||||||| ||
Sbjct 538 ATATGTATTCGGCTGAAGTGAAAAGCATAGCTAAAG-TCTTATTTGCGAAAATAGCGAGT 596
Query 660 AGCTCTGAAGATCAAACCCGAGGAAATGGATAAGTTGTTTGATGATGAGTTAGGGCAGAG 719
|| |||||||||||||||||||||||||| |||||||| || ||||||||||| |||||
Sbjct 597 -GCACTGAAGATCAAACCCGAGGAAATGGAAAAGTTGTTCGACGATGAGTTAGGACAGAG 655
Query 720 AATTAGGCTGAATTACTACCCGCGTTGTCCAGAGCCCGATAAGGTTATTGGTCTAACTCC 779
||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 656 AATTAGGATGAATTACTACCCGCCTTGTCCAGAGCCCGATAAGGTTATTGGTTTAACTCC 715
Query 780 GCATTCTGATTCTACAGGACTCACCATACTGTTGCAGGCTAATGAAGTTGAAGGTCTCCA 839
|||||| ||| | |||||||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 716 GCATTCCGATGCCACAGGACTTACCATACTGTTGCAGGTTAACGAAGTTGAAGGTCTCCA 775
Query 840 AATCAAGAAAAATGCCAAGTGGGTTTCTGTCAAACCTCTCCCAAATGCTTTGGTTGTCAA 899
|||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 776 AATCAAGAAAGATGGCAAGTGGGTTTCTGTCAAACCTCTCCCAAATGCTTTCGTTGTCAA 835
Query 900 TGTCGGAGACATCTTAGAGATAATAACGAATGGGACATACCGAAGTATAGAGCATCGTGG 959
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 836 TGTGGGAGACATCTTAGAGATCATAACGAATGGGACATACCGAAGTATAGAGCATCGCGG 895
Query 960 AGTTGTGAACTCAGAGAAAGAGAGACTTTCGGTGGCGGCATTCCACAATATAGGATTGGG 1019
|||||||||||||||||||||||| ||||| |||||| |||| ||||||| |||| ||||
Sbjct 896 AGTTGTGAACTCAGAGAAAGAGAGGCTTTCTGTGGCGACATTTCACAATACAGGAATGGG 955
Query 1020 TAAAGAAATTGGTCCTATGAGAAGTCTCGTGGAAAGGCACAAGGCTGCATTTTTCAAAAG 1079
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TAAAGAAATTGGTCCGATGAGAAGTCTCGTGGAAAGGCACAAGGCTGCATTTTTCAAAAG 1015
Query 1080 CGTGACTACTGAAGAGTATTTCAATGGCTTGTTTTCCCGTGAGCTCGATGGAAAAGCTTA 1139
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1016 CGTGACCACTGAGGAGTATTTCAATGGCTTGTTCTCCCGTGAGCTCGATGGAAAAGCTTA 1075
Query 1140 CCTTGATGTTATGAGACTCTAA 1161
|||||||||||||||| |||||
Sbjct 1076 CCTTGATGTTATGAGAATCTAA 1097
> Ahg920607 jgi|Araly1|920607|scaffold_101888.1
Length=1119
Score = 917 bits (496), Expect = 0.0
Identities = 924/1125 (82%), Gaps = 52/1125 (5%)
Strand=Plus/Plus
Query 77 AAG-AAGAAGCGGCCATGGAAGTC-AAAGGAGCA--AC-CCGGAGCTCTATCATAGTTCC 131
||| ||||||| | ||||||| | ||||| ||| || ||||||||||| |||||||
Sbjct 6 AAGAAAGAAGCCGACATGGAA-ACAAAAGGGGCAGCACAGTGGAGCTCTATCCTAGTTCC 64
Query 132 TTCTGTTCAAGAGATGGTGAAGGAGAAGATGATCACGACGGTTCCTCCGAGGTATGTACG 191
|||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||| ||
Sbjct 65 TTCTGTTCAAGAGATGGTTAAGGAGAAGACGATCACGACCGTTCCTCCCAGGTATGTCCG 124
Query 192 GTCTGATCAAGACGTAGCTGAGATAGCCG-T--TGATTCTGGTCTAAGAAACC-AGATCC 247
||||||||||||| | || | | || || | ||||| || | | | ||||| ||||||
Sbjct 125 GTCTGATCAAGACAAAACT-A-A-AGTCGATGATGATTTTGATGTGA-AAACCGAGATCC 180
Query 248 CAATCATAGA-CATG-AGTCTTCTGTGTTCTTCAACCTCCATGGATTCTGAGATTGACAA 305
||||||| || | || || | |||||||||||||||| |||||||||| ||| |||| ||
Sbjct 181 CAATCATCGATC-TGAAG-CGTCTGTGTTCTTCAACCACCATGGATTCCGAGGTTGAGAA 238
Query 306 GCTTGAC-TCTGCTTGCAAAGAGTGGGGATTTTTTCAGCTTGTAAACCATGGAATGGAGT 364
|| ||| || ||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 239 ACTCGACTTC-GCTTGCAAAGAGTGGGGATTTTTCCAGCTTGTAAACCATGGAACAGAAC 297
Query 365 CAAGTTTCTTGAACAAAGTAAAGTCAGAGGTTCAAGACTTCTTCAACCTTCCCATGGAAG 424
||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 298 CAAGTTTCTTGGACAAAGTAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAG 357
Query 425 AGAAGAAGAATTTGTGGCAACAACCCGATGAGATCGAAGGGTTT-GGACAAG-TATTTGT 482
| |||||||| || ||||| | ||| |||||||| ||| ||||| ||||||| | |||||
Sbjct 358 AAAAGAAGAAGTTCTGGCAGCGACCAGATGAGATTGAA-GGTTTCGGACAAGCT-TTTGT 415
Query 483 GGTTTCAGAAGAGCAGAAACTCGATTGGGCAGA-TATGTTCTTCCTTACAATGCAACCTG 541
|||||||||||| |||||||| ||||||||||| | |||| |||| |||| |||||| ||
Sbjct 416 GGTTTCAGAAGATCAGAAACTAGATTGGGCAGACT-TGTTTTTCCATACAGTGCAACATG 474
Query 542 TTCGATTACGCAAGCCTCACTTGTTCCCCAAGTTACCTCTGCCCTTTAGAGATACACTAG 601
||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| | |
Sbjct 475 TTCAATTACGCAAGCCTCACTTGTTCCCCAAGCTACCTCTTTCCTTTAGAGATACATTGG 534
Query 602 ACATGTATTCGGCTGAAGTGAAAAGCATTGCTAAGATCTTACTTGGGAAAATAGC-GGTA 660
| | |||||| ||||||||| | ||| | |||||||||||| | | |||||| || |
Sbjct 535 AGACGTATTCTGCTGAAGTGCAGAGCGTAGCTAAGATCTTAATAGCGAAAATGGCAAG-C 593
Query 661 GCTCTGA-AGATCAAACCCGAGGAAATGGATAAGTTGTTTGATGATG-AG-TTAG-GGCA 716
|| || | ||| |||||| |||||| |||| |||||||||||||||| | || | ||
Sbjct 594 GCCCT-AGAGACCAAACCAGAGGAACTGGAAAAGTTGTTTGATGATGTTGATTCGATTCA 652
Query 717 GAGAATTAGGCTGAATTACTACCCGCGTTGTCCAGAGCCCGAT-AAGGTTATTGGTCTAA 775
|| || ||| ||||||||||||| | |||||| | || ||| || ||||| |||||||
Sbjct 653 AAGTATGAGGATGAATTACTACCCACCATGTCCACAACCAGATCAA-GTTATCGGTCTAA 711
Query 776 CTCCGCATTCTGATTC--TACAGGACTCACCATACTGTTGCAGGCT-AATGAAGTTGAAG 832
| |||||||||||||| | | ||||||||| ||||| |||||| | |||||||||||||
Sbjct 712 CCCCGCATTCTGATTCGGT-C-GGACTCACCGTACTGATGCAGG-TGAATGAAGTTGAAG 768
Query 833 GTCTCCAAATCAAGAAAAATGCCAAGTGGGTTTCTGTCAAACCTCTCCCAAATGCTTTGG 892
||||||||||||||||| ||| || |||||| |||| |||||| |||||||||||||
Sbjct 769 GTCTCCAAATCAAGAAAGATGGGAAATGGGTTCCTGTTAAACCTATCCCAAATGCTTTCA 828
Query 893 TTGTCAATGTCGGAGACATCTTAGAGATAATAACGAATGGGACATACCGAAGTATAGAGC 952
| |||||| | |||||| |||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 829 TCGTCAATATTGGAGACGTCTTAGAGATCATAACTAATGGGACATACAGAAGTATAGAGC 888
Query 953 ATCGTGGAGTTGTGAACTCAGAGAAAGAGAGACTTTCGGTGGCGGCATTCCACAATATAG 1012
|||||||||||||||| |||||||||||||| || || | || | || |||||| | |
Sbjct 889 ATCGTGGAGTTGTGAATTCAGAGAAAGAGAGGCTCTCTATTGCAACGTTTCACAATGTGG 948
Query 1013 GATTGGGTAAAGAAATTGGTCCTATGAGAAGTCTCGTGGAAAGGCACAAGGCTGCATTTT 1072
|| || ||| ||| ||||||| | ||| ||||| ||||| || |||| |||| |
Sbjct 949 GAATGTATAAGGAAGTTGGTCCCGCAAAAAGCCTCGTTGAAAGACAAAAGGTTGCAAGAT 1008
Query 1073 TCAAAAG-CGTGACTACTGAA-GAGTATTTCAATGGCTTGTTTTCCCGTGA-GCTCGATG 1129
||||||| | |||| | |||| |||||| | |||| ||||| || ||| | |||||| |
Sbjct 1009 TCAAAAGGC-TGACCA-TGAAAGAGTATAGCGATGGTTTGTTCTCTCGT-ACGCTCGACG 1065
Query 1130 GAAAAGCTTACCTTGATG-TTATGAGACTCTAAAAGGAAA-CAAT 1172
| |||||||| || |||| || ||||| |||||| | ||| ||||
Sbjct 1066 GGAAAGCTTATCTCGATGCTT-TGAGAATCTAAA-G-AAAGCAAT 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5