BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G25315.1

Length=719
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492300 jgi|Araly1|492300|fgenesh2_kg.7__1733__AT4G25315.1        1160    0.0  


> Ahg492300 jgi|Araly1|492300|fgenesh2_kg.7__1733__AT4G25315.1
Length=712

 Score = 1160 bits (628),  Expect = 0.0
 Identities = 684/712 (96%), Gaps = 0/712 (0%)
 Strand=Plus/Plus

Query  1    CTGACCCGTTTCTTCTTCCGGCACTAAGCAGACACGATGAGCTCGGAGAACGAAGACTCT  60
            ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  1    CTGACCCGTTTCTTCTTCCGGCACTGAGCAGACAGGATGAGCTCGGAGAACGAAGACTCT  60

Query  61   TCATCTGTGCGACGGCGCGTGTCCTGCACTAAATGCTTCGACGCTCTCTGGTTCTGCTAT  120
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  61   TCAGCTGTGCGACGGCGCGTGTCCTGCACTAAATGCTTCGACGCTCTCTGGTTCTGCTAC  120

Query  121  TGGATGTCTAGATGGTCCAACATAACCAGCAATGGCGATGACACAGGAAACGATTTGGCA  180
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  121  TGGATGTCTAGATGGTCCAACATAACCAGCAATGGCGATGACACAGGAAAAGATTTGGCA  180

Query  181  CCATTTTATCAAATGCAGCAGTATTACCGGGTTGGAAAACTTGATGATTGTACTAAGAAG  240
            || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CCGTTTTACCAAATGCAGCAGTATTACCGGGTTGGAAAACTTGATGATTGTACTAAGAAG  240

Query  241  TTCTCTGACCTCTTTGATTGTCTTTCCTTGAAGACAAAAAGAGCTTCTGAAGCCGAGAGA  300
            |||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct  241  TTCTCTGATCTCTTTGATTGTCTTTCCTTGAAGACAAAAATAGCTTCTGAAGTCGAGAAA  300

Query  301  ATTCTGGAAGAGCAAGAGAAAGCTGCTGCGGAAAAACATATCTGGATTATGCGAACACAG  360
            ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| 
Sbjct  301  ATTCTGGAAGAGCAAGAGAAAGCTGCTGCGGAAAAACATATTTGGGTTATGCGAACACAA  360

Query  361  GAAGAAGCTGTAAGCCATTGGAATGAGACTTTTGGGCATTTGGAAGATCCAAATTCTTAG  420
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  361  GAAGAAGCTGTAAGTCATTGGAATGAGACTTTTGGGCATTTGGATGATCCAAATTCTTAG  420

Query  421  AAGGTACAGTTTCACGCTTTGGATTCTCTGCTGCATTCTTGACGGAGATTTTTACTTCCA  480
            |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct  421  AAGGTACAGTTTCACGCTTTAGATTCTCTACTGCATTCTTGACGGAGATTTTTACTTCCA  480

Query  481  AGAAACTCGAGGTCTGCTAGAGATCTGCAGATTATTCTGCCGGATAGAGAAAGCTTTTTG  540
            |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  481  AGAAACTCGATGTCTGCTAGAGATCTACAGATTATTCTGCCGGATAGAGAAAGCTTTTTG  540

Query  541  TCATCGCTTACCATGAACATTTTGAGCAAACTTAAGTTATACCTCAATCTCCAAAGAAGC  600
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  541  TCATCGCTTACCATGAACATTTTGAGCAAACTTAAGTTATTCCTCAATCTCCAAAGAAGC  600

Query  601  GTACCTCGAAAGATGGGGGGATGTTTTGAGATCATTTATTGGACTGAGAATGTATTTGGT  660
            |||||||||||||||| |||||||||||||| |||||||||||||| | |||||||||||
Sbjct  601  GTACCTCGAAAGATGGAGGGATGTTTTGAGACCATTTATTGGACTGTGGATGTATTTGGT  660

Query  661  TGATTGGTAACaaaaaaaaaTACATTGCTAAATAAAATCTCACATCTGTTTC  712
            ||| ||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct  661  TGAATGGTAACAACAGAAAATACATTGCTAAATAAAATCTCACATCTGTTTC  712



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26457304398


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5