BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25320.1
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945561 jgi|Araly1|945561|scaffold_701790.1 1965 0.0
Ahg495229 jgi|Araly1|495229|fgenesh2_kg.8__1045__AT5G51590.1 448 9e-125
> Ahg945561 jgi|Araly1|945561|scaffold_701790.1
Length=1255
Score = 1965 bits (1064), Expect = 0.0
Identities = 1206/1270 (95%), Gaps = 27/1270 (2%)
Strand=Plus/Plus
Query 392 TCACTTGATCTTATGTCCGGATGGAGGAGAGAGAAGGAACCAACATCAACAACAACATCA 451
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1 TCACTTGATCTTATGTCCGGATGGAGGAGAGAGAAGGAACCAACAACAACAACAACA-CA 59
Query 452 CTAGCAGTTTCGGCTTGAAGCAGCAACATGAAGCTGCTGCTTCTGATGGTGGTTACTCAA 511
||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct 60 --AGCAGTTTCGGCTTG-A--AGCAACATGAAGCTACTGCTTCTGATGGTGGTTACTCAA 114
Query 512 TGGACCCACCACCAAGACCCGAAAACCCTAACCCGTTTTTAGTCCCACCCACTACTGTCC 571
|||||||||||||| ||||||||||||||||||||||||||| || |||||| |||||
Sbjct 115 TGGACCCACCACCACGACCCGAAAACCCTAACCCGTTTTTAGGCCAACCCACCACTGTAT 174
Query 572 CCGCGGCCGCCACCGTAGCAGCAGCTGTTACTGAGAATGCGGCTACTCCGTTTAGCTTAA 631
|||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 175 CCGCCGCCGCCACCGTTGCAGC--C-GTTACTGAGAATGCGGCTACTCCGTTTAGCTTAA 231
Query 632 CAATGCCGACGGAGAACACTTCAGCTGAGCAGCTGAAAAAGAAGAGAGGTAGGCCGAGAA 691
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 232 CAATGCCGGCGGAGAACACTTCCTCTGAGCAGCTGAAAAAGAAGAGAGGTAGGCCGAGAA 291
Query 692 AGTATAATCCCGATGGGACTCTTGTCGTGACTTTATCGCCGATGCCAATCTCGTCCTCTG 751
|||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||| |
Sbjct 292 AGTATAATCCCGATGGGACTCTCGCCGTGACTCTATCGCCGATGCCAATCTCATCCTCGG 351
Query 752 TTCCGTTGACGTCGGAGTTTCCTCCAAGGAAACGAGGAAGAGGACGTGGCAAGTCTAATC 811
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TGCCGTTGACGTCGGAGTTTCCTCCAAGGAAACGAGGAAGAGGACGTGGCAAGTCTAATC 411
Query 812 GATGGCTCAAGAAGTCTCAAATGTTCCAATTCGATAGAAGTCCTGTTGATACCAATTTGG 871
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 412 GATGGCTCAAGAAGTCTCAAATGTTTCAATTCGATAGAAGTCCTGTTGATACCAATTTGG 471
Query 872 CAGGTGTAGGAACTGCTGATTTTGTTGGTGCCAACTTTACACCTCATGTACTGATCGTCA 931
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 472 CAGGTGTAGGAACTGCTGATTTTGTTGGTGCCAACTTTACTCCTCATGTACTGATCGTCA 531
Query 932 ACGCCGGAGAGGATGTGACGATGAAGATAATGACATTCTCTCAACAAGGATCTCGTGCTA 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 ACGCCGGAGAGGATGTGACGATGAAGATAATGACATTCTCTCAACAAGGATCTCGTGCTA 591
Query 992 TCTGCATCCTTTCAGCTAATGGTCCCATCTCCAATGTTACGCTTCGTCAATCTATGACAT 1051
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 592 TCTGCATCCTTTCAGCTAATGGTCCCATCTCCAATGTTACTCTTCGTCAATCTATGACAT 651
Query 1052 CCGGTGGTACTCTAACTTATGAGGGTCGTTTTGAGATTCTCTCTTTGACGGGTTCGTTTA 1111
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 652 CCGGCGGTACTCTAACTTATGAGGGTCGTTTTGAGATTCTCTCTTTGACTGGTTCGTTTA 711
Query 1112 TGCAAAATGACTCTGGAGGAACTCGAAGTAGAGCTGGTGGTATGAGTGTTTGCCTTGCAG 1171
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TGCAAAATGACTCTGGGGGAACTCGAAGTAGAGCTGGTGGTATGAGTGTTTGCCTTGCAG 771
Query 1172 GACCAGATGGTCGTGTCTTTGGTGGAGGACTCGCTGGTCTCTTTCTTGCTGCTGGTCCTG 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GACCAGATGGTCGTGTCTTTGGTGGAGGACTCGCTGGTCTCTTTCTTGCTGCTGGTCCTG 831
Query 1232 TCCAGGTAATGGTAGGGACTTTTATAGCTGGTCAAGAGCAGTCACAGCTGGAGCTAGCAA 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TCCAGGTAATGGTAGGGACTTTTATAGCTGGTCAAGAGCAGTCACAGCTGGAGCTAGCAA 891
Query 1292 AAGAAAGACGGCTAAGATTTGGGGCTCAACCATCTTCTATCTCCTTTAACATATCCGCAG 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 892 AAGAAAGACGGCTAAGATTTGGGGCTCAACCATCTTCTATCTCCTTTAACATATCTGCAG 951
Query 1352 AAGAACGGAAGGCGAGATTCGAGAGGCTTAACAAGTCTGTTGCTATTCCTGCACCAACCA 1411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 952 AAGAACGGAAGGCGAGATTCGAGAGGCTTAACAAGTCTGTTGCTATTCCTGCACCAACTA 1011
Query 1412 CTTCATACACGCATGTAAACACAACAAATGCGGTTCACAGTTACTATACAAACTCGGTTA 1471
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1012 CTTCGTACACGCATGTAAACACAACAAATGCGGTTCACAGTTACTACACAAACTCGGTTA 1071
Query 1472 ACCATGTCAAGGATCCCTTCTCGTC-T--ATCCCAGTaggaggaggaggaggtggagagg 1528
|||| |||||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 1072 ACCACGTCAAGGATCCCTTCTCGTCGTCCATCCCAGTAGGAGGAGGAGT---TGGAGAGG 1128
Query 1529 taggagaaga--a-g---agg--g-tgaagaagatgatgatgaattagaaggtgaagacg 1579
|||| ||||| | | ||| | |||||||||||| ||||||||||||||||| || |
Sbjct 1129 TAGGTGAAGAGGAAGGCGAGGAAGATGAAGAAGATGAGGATGAATTAGAAGGTGAGGAGG 1188
Query 1580 aagaaTTCGGAGGCGATAGCCAATCTGACAACGAGATTCCGAGCTGATGATGATCATACG 1639
||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct 1189 AAGAATTCGGAGGCGATAGCCAATCTGACAATGAGATTCCGAGCTGATGATC--C-TACG 1245
Query 1640 GTTTCTTTTC 1649
||||||||||
Sbjct 1246 GTTTCTTTTC 1255
> Ahg495229 jgi|Araly1|495229|fgenesh2_kg.8__1045__AT5G51590.1
Length=1634
Score = 448 bits (242), Expect = 9e-125
Identities = 358/414 (86%), Gaps = 7/414 (2%)
Strand=Plus/Plus
Query 869 TGGCAGGTGTAGGAACTGCTGATTTTGTTGGTGCCAA-CTTTACACCTCATGTACTGATC 927
||| ||||| |||| ||||||| ||||| || |||| |||||||||||||| || | |
Sbjct 622 TGG-AGGTGGAGGACCTGCTGAGTTTGTCAGT-CCAAGTTTTACACCTCATGTGCTCA-C 678
Query 928 -GTCAACGCCGGAGAGGATGTGACGATGAAGATAATGACATTCTCTCAACAAGGATCTCG 986
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 679 AGTAAACGCCGGTGAGGATGTGACAATGAAGATAATGACATTCTCTCAACAAGGCTCGCG 738
Query 987 TGCTATCTGCATCCTTTCAGCTAATGGTCCCATCTCCAATGTTACGCTTCGTCAATCTAT 1046
|||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 739 TGCTATTTGCATTCTTTCAGCTAACGGTCCCATTTCCAATGTTACAATTCGTCAATCTAT 798
Query 1047 GACATCCGGTGGTACTCTAACTTATGAGGGTCGTTTTGAGATTCTCTCTTTGACGGGTTC 1106
|||||| ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||
Sbjct 799 GACATCTGGTGGTACTCTCACTTATGAGGGTCATTTTGAGATTCTGTCTTTGACGGGTTC 858
Query 1107 GTTTATGCAAAATGACTCTGGAGGAACTCGAAGTAGAGCTGGTGGTATGAGTGTTTGC-C 1165
|||||| | || || ||||||||| ||||| |||||||| || |||||||| | | |
Sbjct 859 GTTTATACCAAGCGAGAGTGGAGGAACCCGAAGCAGAGCTGGCGGGATGAGTGTGT-CTC 917
Query 1166 TTGCAGGACCAGATGGTCGTGTCTTTGGTGGAGGACTCGCTGGTCTCTTTCTTGCTGCTG 1225
||||||||||||||||||||||||||||||| ||||| || ||||||||| | || ||||
Sbjct 918 TTGCAGGACCAGATGGTCGTGTCTTTGGTGGTGGACTTGCCGGTCTCTTTATAGCCGCTG 977
Query 1226 GTCCTGTCCAGGTAATGGTAGGGACTTTTATAGCTGGTCAAGAGCAGTCACAGC 1279
||||||| ||||||||||| |||| ||||||||| ||||| ||| | || ||||
Sbjct 978 GTCCTGTTCAGGTAATGGTGGGGAGTTTTATAGCGGGTCAGGAGGAATCGCAGC 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68600531245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5