BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25330.1
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492298 jgi|Araly1|492298|fgenesh2_kg.7__1731__AT4G25330.1 983 0.0
> Ahg492298 jgi|Araly1|492298|fgenesh2_kg.7__1731__AT4G25330.1
Length=706
Score = 983 bits (532), Expect = 0.0
Identities = 651/709 (92%), Gaps = 6/709 (1%)
Strand=Plus/Plus
Query 1 ATGCACAACTCTCTAAC-TTCTAATCAGAGTGGGGCTACTAGTCCGACGGTTTTCTCCGG 59
|||||||| ||||| || |||| |||||||||| || |||||||| ||| ||||||||||
Sbjct 1 ATGCACAAGTCTCT-ACTTTCTTATCAGAGTGGAGCGACTAGTCCTACGATTTTCTCCGG 59
Query 60 CGAGTTCGCCGATGACGTCGACTGGTCCGATGAAAACTGGCCGGAACTAGAGTTCCGTTC 119
|||||||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 60 CGAGTTCGCCGACGACGTCGAATGGGGTGATGAAAACTGGCCGGAACTAGAGTTCCGGTC 119
Query 120 AGCGGAGGACGAAGCTTGGTACGCCGTAGAATTTTCTGACATCTGTGACGCTTTG-TGGA 178
| ||||||||||||||||||||||||| || |||| |||||||||||||||||| | ||
Sbjct 120 ACCGGAGGACGAAGCTTGGTACGCCGTGGAGGTTTCGGACATCTGTGACGCTTTGAT-GA 178
Query 179 TCAGCTTCAACGGCTTCTCTTATGAGCACGACGAGTTTTATCCAGCTGACGATTTCAAAA 238
||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 179 TCAGCTTCAACGGCTTCTCTTATGAGCACGACGAGTTTTATCCGGCGGACGATTTCACGA 238
Query 239 ACTCCGACGAGATTCAAGAATTCGAAGAGAGGTTTCGAGCTTGTTCCGAGCAGATGCAAG 298
|||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 239 CCTCCGACGAGATTCAAGAGTTTGAAGAGAGGTTTCGAGCTTGTTCTGAGCAGATGCAAG 298
Query 299 ACATCGAATGTCCCAAGGTCCATGAAGGCACCCAGGTCTGCGCCACGTTTCCTTCCGTCA 358
|| |||| || ||||||||||||||||||||| | ||||||||||| | |||||||||||
Sbjct 299 ACGTCGAGTGCCCCAAGGTCCATGAAGGCACCAAAGTCTGCGCCACATGTCCTTCCGTCA 358
Query 359 CCGAAGAAGTCAAGTTCTACGACGCTATCGTCGTTACGGTGGAGAGGACGAAGCATGAAC 418
| | ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 359 CTGGAGAAGTCAAGTTCTATGACGCTATCGTCGTTACGGTGGAGAGGATGAAGCATGAAA 418
Query 419 GAGACGAGGAAGGGAACGAAATTTGTGGATGTGATTTCAAACTTTTCTGGAAACAAGGTC 478
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 419 GAGACGAGGAAGGGAACGAAGTTTGTGGATGTGATTTCAAACTATTCTGGAAACAAGGTC 478
Query 479 CTTGGATTAACCAAGTGACTACTGCGAAAGTTGGAGATATTTGTCTCAGAGCAAAGGATA 538
||| |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct 479 CTTATATTAACCAAGTGACCACTGCGAAAGTTGGAGACATTTGTCTCAGAGCAGAGGATA 538
Query 539 ATCGAATAAATCCAAAAGTGGTTTCGTTCTTGAAAGAAGCTAGAAGGAAGCTTCATGGAG 598
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 539 ATCGAATGAATCCAAAAGTGGTTTCGTTCTTAAAAGAAGCTAGAAGGAAGCTTCATGGTG 598
Query 599 AAACATGTAATCAAGGGGAAGAGACAGAGTGGCAAAAGATTCTTGAGAAGGTGAATTCTG 658
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AACCATGTAACCAAGGGGAAGAGACAGAGTGGCAAAAGATTCTTGAGAAGGTGAATTCTG 658
Query 659 CTATTCAAAACAACTTAAGCGTTGATGGAT-GATTATGTTATGTTGCTT 706
|||||| |||||||||||| |||||||| | | ||||||||||||||||
Sbjct 659 CTATTCGAAACAACTTAAGTGTTGATGGTTAG-TTATGTTATGTTGCTT 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26533550232
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5