BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25330.1 Length=721 Score E Sequences producing significant alignments: (Bits) Value Ahg492298 jgi|Araly1|492298|fgenesh2_kg.7__1731__AT4G25330.1 983 0.0 > Ahg492298 jgi|Araly1|492298|fgenesh2_kg.7__1731__AT4G25330.1 Length=706 Score = 983 bits (532), Expect = 0.0 Identities = 651/709 (92%), Gaps = 6/709 (1%) Strand=Plus/Plus Query 1 ATGCACAACTCTCTAAC-TTCTAATCAGAGTGGGGCTACTAGTCCGACGGTTTTCTCCGG 59 |||||||| ||||| || |||| |||||||||| || |||||||| ||| |||||||||| Sbjct 1 ATGCACAAGTCTCT-ACTTTCTTATCAGAGTGGAGCGACTAGTCCTACGATTTTCTCCGG 59 Query 60 CGAGTTCGCCGATGACGTCGACTGGTCCGATGAAAACTGGCCGGAACTAGAGTTCCGTTC 119 |||||||||||| |||||||| ||| ||||||||||||||||||||||||||||| || Sbjct 60 CGAGTTCGCCGACGACGTCGAATGGGGTGATGAAAACTGGCCGGAACTAGAGTTCCGGTC 119 Query 120 AGCGGAGGACGAAGCTTGGTACGCCGTAGAATTTTCTGACATCTGTGACGCTTTG-TGGA 178 | ||||||||||||||||||||||||| || |||| |||||||||||||||||| | || Sbjct 120 ACCGGAGGACGAAGCTTGGTACGCCGTGGAGGTTTCGGACATCTGTGACGCTTTGAT-GA 178 Query 179 TCAGCTTCAACGGCTTCTCTTATGAGCACGACGAGTTTTATCCAGCTGACGATTTCAAAA 238 ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | Sbjct 179 TCAGCTTCAACGGCTTCTCTTATGAGCACGACGAGTTTTATCCGGCGGACGATTTCACGA 238 Query 239 ACTCCGACGAGATTCAAGAATTCGAAGAGAGGTTTCGAGCTTGTTCCGAGCAGATGCAAG 298 |||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct 239 CCTCCGACGAGATTCAAGAGTTTGAAGAGAGGTTTCGAGCTTGTTCTGAGCAGATGCAAG 298 Query 299 ACATCGAATGTCCCAAGGTCCATGAAGGCACCCAGGTCTGCGCCACGTTTCCTTCCGTCA 358 || |||| || ||||||||||||||||||||| | ||||||||||| | ||||||||||| Sbjct 299 ACGTCGAGTGCCCCAAGGTCCATGAAGGCACCAAAGTCTGCGCCACATGTCCTTCCGTCA 358 Query 359 CCGAAGAAGTCAAGTTCTACGACGCTATCGTCGTTACGGTGGAGAGGACGAAGCATGAAC 418 | | ||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 359 CTGGAGAAGTCAAGTTCTATGACGCTATCGTCGTTACGGTGGAGAGGATGAAGCATGAAA 418 Query 419 GAGACGAGGAAGGGAACGAAATTTGTGGATGTGATTTCAAACTTTTCTGGAAACAAGGTC 478 |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 419 GAGACGAGGAAGGGAACGAAGTTTGTGGATGTGATTTCAAACTATTCTGGAAACAAGGTC 478 Query 479 CTTGGATTAACCAAGTGACTACTGCGAAAGTTGGAGATATTTGTCTCAGAGCAAAGGATA 538 ||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| Sbjct 479 CTTATATTAACCAAGTGACCACTGCGAAAGTTGGAGACATTTGTCTCAGAGCAGAGGATA 538 Query 539 ATCGAATAAATCCAAAAGTGGTTTCGTTCTTGAAAGAAGCTAGAAGGAAGCTTCATGGAG 598 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 539 ATCGAATGAATCCAAAAGTGGTTTCGTTCTTAAAAGAAGCTAGAAGGAAGCTTCATGGTG 598 Query 599 AAACATGTAATCAAGGGGAAGAGACAGAGTGGCAAAAGATTCTTGAGAAGGTGAATTCTG 658 || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AACCATGTAACCAAGGGGAAGAGACAGAGTGGCAAAAGATTCTTGAGAAGGTGAATTCTG 658 Query 659 CTATTCAAAACAACTTAAGCGTTGATGGAT-GATTATGTTATGTTGCTT 706 |||||| |||||||||||| |||||||| | | |||||||||||||||| Sbjct 659 CTATTCGAAACAACTTAAGTGTTGATGGTTAG-TTATGTTATGTTGCTT 706 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26533550232 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5