BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25340.1
Length=1716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492297 jgi|Araly1|492297|fgenesh2_kg.7__1730__AT4G25340.1 2013 0.0
Ahg946574 jgi|Araly1|946574|scaffold_702803.1 195 1e-48
> Ahg492297 jgi|Araly1|492297|fgenesh2_kg.7__1730__AT4G25340.1
Length=1559
Score = 2013 bits (1090), Expect = 0.0
Identities = 1365/1492 (91%), Gaps = 42/1492 (3%)
Strand=Plus/Plus
Query 65 AAAATGGGATTCTGGGGACTTGAAGTGAAACCTGGGAAGCCTCAAGCTTATAATCCAAAA 124
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 37 AAAATGGGATTCTGGGGACTCGAAGTGAAACCTGGGAAACCTCAAGCTTATAATCCGAAA 96
Query 125 AATGAACAAGGAAAGATTCACGTGACCCAGGCAACTCTAGGTACGGGTTTGAGCAAAGAA 184
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 97 AATGAACAAGGAAAGATTCACGTCACCCAGGCAACTCTAGGTGCGGGTTTGAGCAAAGAA 156
Query 185 AAGAGTGTGATTCAGTGTTCAATAGGAGACAAGGCTCCTATTGCTTTGTGTTCATTGTTG 244
|||||||||||||||||||| |||||||||||||| || ||| | |||||||||||||||
Sbjct 157 AAGAGTGTGATTCAGTGTTCTATAGGAGACAAGGCCCCAATTTCCTTGTGTTCATTGTTG 216
Query 245 CCAAACAAAATCGAATGTTGCCCTCTGAATCTTGAGTTTGACGATGATGATGAGCCAGTG 304
|| |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 217 CCTAACAAAATTGAATGTTGTCCTCTGAATCTTGAGTTTGATGATGATGATGAGCCAGTC 276
Query 305 GAATTCACCGTG-ACTGGTGACAGAAGTATCCACTTGTCTGGATTCTTGGAGTATTATCA 363
|||||| ||||| || |||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 277 GAATTCTCCGTGAAC-GGTGACAGAAGTATCCACCTGTCTGGGTTCTTGGAGTATTATGA 335
Query 364 GGACG-ATGAAGATGATTATGAGCATGATGAAGATGATTCAGATGGTATTGATGTTGGTG 422
||| | ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 336 GGA-GAATGAAGATGATTACGAGCAGGATGAGGATGATTCAGATGGTATTGATGTTGGTG 394
Query 423 AGTCTGAGGAAGACGATTCGTGTGAATATGATAGTGAAGAGGATGAGCAATTGGATGAAT 482
| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 395 AATCTGAGTCAGACGATTCGTGTGAATATGATAGTGAAGAGGATGATCAATTGGATGAAT 454
Query 483 TTGAAGACTTCCTTGATAGCAATCTTGAAAGGTATCGGAATGCTGCTGCCCCAAAGAGTG 542
|||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 455 TTGAAGACTTTCTTGATAGCAATCTTGAAATGTATCGGAAAGCTGCTGCCCCAAAGAGTG 514
Query 543 GAGTTATAATTGAGGAGATAGAAGATGAAGAGAAACCTGCCAAAGATAATAAGGCAAAAC 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GAGTTATAATTGAGGAGATAGAAGATGAAGAGAAACCTGCCAAAGATAATAAGGCAAAAC 574
Query 603 AAACCAAGAAGAAGAGTCAAGCTAGCGAAGGTGAGAATGCAAAGAAACAAATCGTTGCCA 662
|| ||||||||||||||| |||||||||| ||||| ||||||||||||||| |||||||
Sbjct 575 GAATCAAGAAGAAGAGTCAGGCTAGCGAAGATGAGAGTGCAAAGAAACAAATTGTTGCCA 634
Query 663 TAGAGGGTGCCCATGTTCCAGTTTTGGAAAGCGAAGATGAAGACGAAGACGGTTTACCTA 722
||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||
Sbjct 635 TAGAGAGTGCCCATGTTCCAGTTCTGGAAAGCGAAGAAGAAGACGAAGATGGTTTACCTA 694
Query 723 TTCCTAAAGGAAAATCATCTGAAGTAGAGAATGCGTCAGGTGAGAAGATGGT-TGTAGAT 781
|||||||||||||| || ||||| |||||| || ||||||||||||||||| | |||||
Sbjct 695 TTCCTAAAGGAAAAGCACCTGAACTAGAGACTGAGTCAGGTGAGAAGATGGACT-TAGAT 753
Query 782 AATGACGAACAAGGTAGTAACAAGAAACGGAAGGCCAAGGCTGCTGAGCAAGATGATGGA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 754 AATGACGAACAAGGTAGTAACAAGAAACGGAAGGCCAAGGCTGCTGAGCAAGA--A---A 808
Query 842 Caagaaagtgcaaacaagagtaaaaagaagaaaaatcagaaagagaagaagaaaggggaa 901
| || |||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 809 ---GT--GT--AAACAAGAGTAAAAAGAAGAAAAACCAGAAAGAAAAGAAGAATGGGGAA 861
Query 902 aaTGTCTTAAATGAGGAAGCTG--GA-CAAGTTCAGACGGGAAATGTTCTGAAGAAGCAG 958
|| || |||||||||||||| || ||||||| |||||||||||| ||||| ||||||
Sbjct 862 AACACCTCAAATGAGGAAGCTGATGAACAAGTTCCGACGGGAAATGTGCTGAAAAAGCAG 921
Query 959 GATATTAGCCAAATTTCTTCAAACACAAAAGCTCAAGATGGAACTGCAAACAATGCCATG 1018
|| | |||||||||||||||||||| ||||||||| ||||||||||| || |||| |||
Sbjct 922 GAAACCAGCCAAATTTCTTCAAACACGAAAGCTCAAAATGGAACTGCAGACCATGCAATG 981
Query 1019 AGTGAAAGCTCCAAGACCCCAGATAAATCTGCTGagaagaaaactaaaaataagaaaaag 1078
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 982 AGTGAAAGCTCCAAGACCCCAGATAAATCTGCTGAGAAGAAAAAGAAAAATAAGAAAAAG 1041
Query 1079 aagaaaC-CAAGTGACGAAGCTGCAG-----A--AA-----TTTCTGGTACTGTTGAGAA 1125
||||| | ||||||| |||||| ||| | || |||||||||||||||||||
Sbjct 1042 AAGAA-CTCAAGTGAGGAAGCTACAGTTGGGAGTAAAACCATTTCTGGTACTGTTGAGAA 1100
Query 1126 GCAAACCCCAGCGGACTCCAAGTCTTCTCAAGTACGGACATACCCAAATGGGCTCATTGT 1185
|||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 GCAAACCCAAGAGGACTCAAAGTCTTCTCAAGTACGGACATACCCAAATGGGCTCATTGT 1160
Query 1186 TGAAGAGTTGAGCATGGGAAAACCCAACGGCAAGAGAGCTGATCCTGGAAAAACGGTTTC 1245
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TGAAGAGTTGAGCATGGGCAAACCCAACGGCAAGAGAGCTGATCCTGGAAAAACGGTTTT 1220
Query 1246 TGTGCGCTATATTGGAAAACTTCAGAAGAATGGGAAGATTTTCGATTCCAACATTGGAAA 1305
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TGTCCGCTACATTGGTAAACTTCAGAAGAATGGGAAGATTTTCGATTCCAACATTGGAAA 1280
Query 1306 ATCACCATTTAAGTTTCGTCTAGGTATTGGATCA-GTCATTAAGGGATGGGATGTTGGAG 1364
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 1281 ATCACCATTTAAGTTTCGTCTAGGTATTGGA-CAAGTCATTAAGGGATGGGATGTTGGCG 1339
Query 1365 TTAATGGCATGCGCGTTGGTGACAAAAGGAAGCTTACAATTCCTCCATCAATGGGGTATG 1424
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 TTAATGGCATGCGTGTTGGTGACAAAAGGAAGCTTACAATTCCTCCATCAATGGGGTATG 1399
Query 1425 GTGTGAAGGGTGCTGGTGG---CCAGATTCCTCCTAATTCTTGGCTGACTTTTGATGTCG 1481
|| |||||||| |||||| |||||||||||||||| |||||||||| ||||||||||
Sbjct 1400 GTCCGAAGGGTGTTGGTGGTGGCCAGATTCCTCCTAATGCTTGGCTGACGTTTGATGTCG 1459
Query 1482 AACTGATTAATGTTCAATAAAACTGCCCTGA-A-TTCATAGAATCTCTGATG 1531
|||||||||||||||||||||||||||| || | |||||||||||| |||||
Sbjct 1460 AACTGATTAATGTTCAATAAAACTGCCCAGAGAATTCATAGAATCTATGATG 1511
> Ahg946574 jgi|Araly1|946574|scaffold_702803.1
Length=321
Score = 195 bits (105), Expect = 1e-48
Identities = 133/147 (90%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 490 CTTCCTTGATAGCAATCTTGAAAGGTATCGGAATGCTGCTGCCCCAAAGAGTGGAGTTAT 549
||| ||||||||||||||||||| |||||| |||||| | | ||||||| | |||||| |
Sbjct 1 CTTTCTTGATAGCAATCTTGAAATGTATCGTAATGCTTCGGTCCCAAAGTGCGGAGTTGT 60
Query 550 AATTGAGGAGATAGAAGATGAAGAGAAACCTGCCAAAGATAATAAGGCAAAACAAACCAA 609
||||||||||||||||||||||||||||||||||||| ||| |||| |||||| ||||||
Sbjct 61 AATTGAGGAGATAGAAGATGAAGAGAAACCTGCCAAATATAGTAAGACAAAACGAACCAA 120
Query 610 GAAGAAGAGTCAAGCTAGCGAAGGTGA 636
||||||||||||||||||||||| |||
Sbjct 121 GAAGAAGAGTCAAGCTAGCGAAGATGA 147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64372514050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5