BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25360.1
Length=2215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945556 jgi|Araly1|945556|scaffold_701785.1 2481 0.0
Ahg495231 jgi|Araly1|495231|fgenesh2_kg.8__1047__AT5G51640.1 905 0.0
> Ahg945556 jgi|Araly1|945556|scaffold_701785.1
Length=1645
Score = 2481 bits (1343), Expect = 0.0
Identities = 1524/1609 (95%), Gaps = 21/1609 (1%)
Strand=Plus/Plus
Query 356 TCTACTAGTGAAGAAACCATGGCTTTTGGTTCTCCTAGGAATAATTCTATATTAGCTGCG 415
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3 TCTACTAGTGAACCTGCCATGGCTTTTGGTTCTCCTAGG---AATTCTATATTAGCTGCG 59
Query 416 GCTGGATTTCCTCGGAAAGTGTCTACAGTTGCAATTGCTATTGGTGGTTTGGCATCATTC 475
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct 60 GCTGGATTTCCTCGGAAAGTGTCTACTGTTGCAATTGCTATTGGCGGATTGGCTTCATTC 119
Query 476 TTTGTTTTCGGATTGTTGCTTCGTCTTTCGTATCCGAATAGTTCTTCAGTTGGTGGCATA 535
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TTTGTTTTCGGATTGTTGCTTCGTCTTTCGTATCCGAATAGTTCTTCAGTTAGTGGCATA 179
Query 536 TTTTATGGGATAGGGAATCCTGAACAAGTTCATGTCCCTTTATCTTTGAGCAACCATACT 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTTTATGGGATAGGGAATCCTGAACAAGTTCATGTCCCTTTATCTTTGAGCAACCATACC 239
Query 596 GTCAATATCCTTCAGAAGAGTAGTGACATCAATGCGTTTGATAAAAATCTGACTTCTGAT 655
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTAAAAATCCTTCAGAAGAGTAGTGACATCAATGCGTTTGATAAAAATCTGACTTCTGAT 299
Query 656 TCTAGCTCTGGCT-TACCTGTTGTTGTTAGCAAAAGTATACCACCTCCAGATTTCAG-TA 713
|| ||||| |||| ||| |||||||||||||| |||| ||| ||||||||| | ||
Sbjct 300 TCCAGCTCAGGCTCAACC-CATGTTGTTAGCAAAAACATACAACCGCCAGATTTC-GATA 357
Query 714 GTGATAGGAAGTTGGAGACACCTTTGACACAAGAAAAAGAGGATTTGGTTTCTTCGGATA 773
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 358 GTGATAGGAAGTTGGAGACACCTTTGACACAAGAAAAAGAGGATTCCGTTTCTTCGGATA 417
Query 774 TAACTGAAAAGACTGA-TGTTCAATCAGGTGAACGTGAAACCAATGTTTCCAAGGCTGAA 832
|||| | | ||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 418 TAAC----ACCATTGACTGTTCAATCAGGTGAAGGTG------ATGTTTCCAAGGCTGAA 467
Query 833 GACACTCCAAGTGCATCATCTCCTCCAGATGATGTCTCTGAAACTGCTTCAGCAGAACCA 892
|||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| |||
Sbjct 468 GACACTATAAGTGCATCATCTCCTCCACATGATGACTCTGAAACTGCTTCAGCAGAGCCA 527
Query 893 GAGTGTGATTTGTATCAAGGTAGTTGGTTTTATGATCCTGGGGGACCTCTCTACACGAAC 952
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 528 GAGTGTGATTTGTATCAAGGTAGTTGGTTTTATGATCCTGGGGGACCTCTGTACACGAAC 587
Query 953 AACTCTTGCCCTGTCCTGACGCAGATGCAGAATTGCCAGGGAAATGGAAGACCTGACAAG 1012
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 588 AACTCTTGCCCTGTCCTGACACAGATGCAGAATTGCCAGGGCAATGGAAGACCTGATAAG 647
Query 1013 GGATATGAGAACTGGAGATGGAAACCGTCTCAGTGTGAGCTTCCTCGGTTTGATGCCAGA 1072
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 648 GGATATGAGAACTGGAGATGGAAACCGTCTCAGTGTGACCTTCCACGGTTTGATGCCAGG 707
Query 1073 AAATTTCTTGAACTTATGAAAGGCAAGACACTGGCCTTTATAGGAGATTCAGTAGCTCGT 1132
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 AAATTTCTTGAACTAATGAAAGGCAAGACACTGGCCTTTATAGGAGATTCAGTAGCTCGT 767
Query 1133 AATCAGATGGAGTCCATGTTGTGCCTTCTTTGGCAGGTTGAAACACCAGTCAATCGTGGG 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 AATCAGATGGAGTCCATGTTGTGCCTTCTTTGGCAGGTTGAAACACCAGTCAATCGTGGG 827
Query 1193 AGCCGAAAGATGCAGAGATGGTATTTTAAG-CAATCATCAGTAATGATTGCCCGTATTTG 1251
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 828 AGCCGAAAGATGCAGAGATGGTATTTTAAGTCA-TCATCAGTAATGATTGCCCGTATTTG 886
Query 1252 GTCATCTTGGCTTGTTCATCAGTTCAACGAAAAATTCGATTATGCTCCTGAAGGTGTCAC 1311
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 887 GTCATCTTGGCTTGTTCATCAGTTCAACGAAAAATTTGATTATGCTCCTGAAGGTGTCAC 946
Query 1312 AAAACTAAAGCTGGATCTTCCTGATGAGCGCATAATGGAAGCTATCCCGAAATTCGACGT 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 AAAACTAAAGCTGGATCTTCCTGATGAGCGCATAATGGAAGCTATCCCGAAATTCGACGT 1006
Query 1372 GGTTGTCCTCTCATCAGGGCACTGGTTTGCAAAGCAGTCTGTCTACATATTGAAAGAAGA 1431
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||| || ||
Sbjct 1007 GGTTGTCCTCTCATCAGGACACTGGTTCGCAAAGCAGTCGGTCTACATATTGAAGGACGA 1066
Query 1432 GATCGTGGGAGGCCAATTATGGTGGCCAGACAAATCAAAACCCATGAAAGTCAATAACGT 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 GATCGTGGGAGGCCAATTATGGTGGCCAGACAAATCAAAACCCATGAAAGTCAATAACGT 1126
Query 1492 GGATGCATTTGGAATATCAGTTGAAACAATCCTTAAGTCCATGGCTACACACCCGAACTA 1551
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1127 GGATGCATTTGGAATATCAGTTGAAACAATCCTAAAGTCCATGGCTACACACCCGAACTA 1186
Query 1552 CAGCGGTTTGACCATTGTGAGAACATTCTCACCTGATCATTACGAAGGTGGTGCTTGGAA 1611
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1187 CAGCGGTTTGACCATTGTGAGAACATTCTCACCTGATCACTACGAGGGCGGTGCTTGGAA 1246
Query 1612 CACAGGTGGATCATGCACGGGGAAAGAAGAACCCATCCTTCCAGGGAAGCTAGTGAAAAA 1671
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 CACAGGTGGTTCATGCACGGGGAAAGAAGAACCCATCCTTCCAGGGAAGCTAGTGAAAAA 1306
Query 1672 CGGATTCACAGAGATAATGCATGAGAAGCAAGCGACAGGATATAACCAAGCCGTCGATAA 1731
||||||||||||||||||||| ||||||||||||||||||||||||| ||| || |||||
Sbjct 1307 CGGATTCACAGAGATAATGCACGAGAAGCAAGCGACAGGATATAACCTAGCTGTTGATAA 1366
Query 1732 AGTCGCGGAGAATTTGAAGCTAAAACTAAAGCTGATGGATATCACAGAGGCATTTGGATA 1791
||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 1367 AGTCGCGGAGAATTTGAAGCTTAAATTAAAGCTGATGGATATCACAGAGGCTTTTGGATA 1426
Query 1792 TCGCCATGATGGTCATCCTGGTCCATTCAGAAGTCCTGACCCTAACAAGATCACTAAACG 1851
||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 1427 TCGACATGATGGTCATCCTGGTCCATACAGGAGTCCTGACCCGAACAAGATCACTAAACG 1486
Query 1852 GGGACCAGACGGACGGCCTCCACCTCAGGACTGCTTGCACTGGTGCATGCCAGGACCAGT 1911
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1487 GGGACCAGACGGACGGCCTCCACCTCAGGACTGCTTGCACTGGTGCATGCCGGGACCAGT 1546
Query 1912 CGATACATGGAACGAAATGGTCTTGGAGCTCATAAGGAGAGACA-GGAA 1959
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1547 GGATACATGGAACGAAATGGTCTTGGAGCTCATAAGGAGAGACAAGGAA 1595
Score = 69.4 bits (37), Expect = 1e-10
Identities = 40/41 (98%), Gaps = 1/41 (2%)
Strand=Plus/Plus
Query 1955 AGGAAAAGCTCATCAACTTGACTTGGTTTGAAA-CTCAAAG 1994
||||||||||||||||||||||||||||||||| |||||||
Sbjct 1605 AGGAAAAGCTCATCAACTTGACTTGGTTTGAAAACTCAAAG 1645
> Ahg495231 jgi|Araly1|495231|fgenesh2_kg.8__1047__AT5G51640.1
Length=1789
Score = 905 bits (490), Expect = 0.0
Identities = 894/1087 (82%), Gaps = 35/1087 (3%)
Strand=Plus/Plus
Query 886 AGAACCAGAGTGTGATTTGTATCAAGGTAGTTGGTTTTATGATCCTGGGGGACCTCTCTA 945
|||| |||| |||||| | ||||| |||| ||||||| |||||| |||||| | ||
Sbjct 462 AGAAACAGAATGTGATCTATATCATGGTAACTGGTTTTTTGATCCAATGGGACCGGTGTA 521
Query 946 CACGAACAACTCTTGCCCTGTCCTGACGCAGATGCAGAATTGCCAGGGAAATGGAAGACC 1005
||| ||||||||||| ||| | |||| ||||||||||| || ||||| |||||||||||
Sbjct 522 CACAAACAACTCTTGTCCTCTTTTGACACAGATGCAGAACTGTCAGGGTAATGGAAGACC 581
Query 1006 TGACAAGGGATATGAGAACTGGAGATGGAAACCGTCTCAGTGTGAGCTTCCTCGGTTTGA 1065
||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 582 TGACAAGGGGTATGAAAACTGGAGATGGAAACCGTCTCAGTGTGATCTTCCACGGTTTGA 641
Query 1066 TGCCA-GAAAATTTCTTGAACTTATGAAAGGCAAGACACTGGCCTTTATAGGAGATTCAG 1124
||||| |||| ||||| || || |||| |||||||||||| || |||||||| |||||||
Sbjct 642 TGCCAAGAAA-TTTCTCGAGCTAATGAGAGGCAAGACACTAGCTTTTATAGGTGATTCAG 700
Query 1125 TAGCTCGTAATCAGATGGAGTCCATGTTGTGCCTTCTTTGGCAGGTTGAAACACCAGTCA 1184
| |||||||||||||||||||||||| ||||||||||||||||||| ||||| || || |
Sbjct 701 TGGCTCGTAATCAGATGGAGTCCATGATGTGCCTTCTTTGGCAGGTAGAAACTCCGGTTA 760
Query 1185 ATCGTGGGAGCCGAAAGATGCAGAGATGGTATTTTAAG-CAATCATCAGTAATGATTGCC 1243
| ||||||| ||||||||||||||||||||||| | | || |||||||||||||| ||
Sbjct 761 ACCGTGGGAATCGAAAGATGCAGAGATGGTATTTCAGGTCA-TCATCAGTAATGATAGCT 819
Query 1244 CGTATTTGGTCATCTTGGCTTGTTCATCAGTTCAACGAAAAATTCGATTATGCTCCTGAA 1303
|| || |||||||||||||| |||||||||||||||||| || | || |||| ||||
Sbjct 820 CGGATGTGGTCATCTTGGCTCGTTCATCAGTTCAACGAACCGTTTGGTTTTGCTACTGAT 879
Query 1304 GGTGTCACAAAACTAAAGCTGGATCTTCCTGATGAGCGCATAATGGAAGCTATCCCGAAA 1363
||||| || ||||| ||||| || | ||||| ||||||||||| |||||| | ||||||
Sbjct 880 GGTGTAACCAAACTCAAGCTCGACCAACCTGACGAGCGCATAATTGAAGCTCTTCCGAAA 939
Query 1364 TTCGACGTGGTTGTCCTCTCATCAGGG-CACTGGTTTGCAAAGCAGTCTGTCTACATATT 1422
||||| |||||||| || ||||| ||| |||||||||||||| |||||||||||||| ||
Sbjct 940 TTCGATGTGGTTGTACTTTCATC-GGGTCACTGGTTTGCAAAACAGTCTGTCTACATTTT 998
Query 1423 GAAA-GAAGAGATCGTGGGAGGCCAATTATGGTGGCCAGACAAATCAAAACCCATG-AAA 1480
||| || ||||| || |||||||| ||||||||||| |||||||||||||| | | |||
Sbjct 999 -AAATGACGAGATTGTTGGAGGCCAGTTATGGTGGCCGGACAAATCAAAACC-A-GCAAA 1055
Query 1481 G-TCAATAACGTGGATGCATTTGGAATATCAGTTGAAACAATCCTTAAGTCCATGGCTAC 1539
| | || ||||| | |||||||| || || || ||||||||||| ||| | |||||||
Sbjct 1056 GATTAACAACGTCAAAGCATTTGGGATCTCTGTAGAAACAATCCTAAAGGCAATGGCTAA 1115
Query 1540 ACACCCGAACTACAGCGGTTTGACCAT-TGTGA-GAACATTC-TCACCTGATCATTACGA 1596
|||||| ||||||| |||| ||||||| | | | | || || || |||||||| || ||
Sbjct 1116 ACACCCAAACTACACCGGTCTGACCATCT-T-ACGTAC-TTGGTCGCCTGATCACTATGA 1172
Query 1597 AGGTGGTGCTTGGAACACAGGTGGATCATGCACGGGGAAAGAAGAACC-CATCCTTCCAG 1655
|| ||||| |||||||| |||||||| || || || |||| ||| || | |||| || |
Sbjct 1173 GGGCGGTGCATGGAACACTGGTGGATCGTGTACTGGCAAAGTAGAGCCGCTTCCTCCC-G 1231
Query 1656 GGAAGCTAGTGAAAAACGGATTCACAGAGATAATGCATGAGAAGCAAGCGACAGGATATA 1715
||||| |||| | |||||||||||||||||||||||| ||||||||| | ||||| | |
Sbjct 1232 GGAAGTTAGTTACAAACGGATTCACAGAGATAATGCACGAGAAGCAAACAACAGGGTTTC 1291
Query 1716 ACCAAGCCGT--CG-AT-A-AAGTCGCGGAGAATTTGAAGCTAA-AA-CTAAAGCTGATG 1768
||| ||| || || || | || | ||| ||| || | || || || ||||| |||
Sbjct 1292 ACCGAGCTGTGGCGGATGATAAA-CTCGGC-AATA-GAT-CGAAGAAGCTGAAGCTAATG 1347
Query 1769 GATATCACAGAGGCATTT-GGATATCGCCATGATGGTCATCCTGGTCCATTCAGAAGTCC 1827
|||||||| ||||| ||| || |||||||| || ||||||||||| || | ||| |||||
Sbjct 1348 GATATCACTGAGGC-TTTCGGGTATCGCCACGACGGTCATCCTGGCCCGTACAGGAGTCC 1406
Query 1828 TGACCCTAACAAGATCACTAAACGGGGACCAGACGGACGGCCTCCACCTCAGGACTGCTT 1887
|||||| || |||||||| ||||| ||||||||||| | |||||| || || ||||||||
Sbjct 1407 TGACCCGAAAAAGATCACAAAACGTGGACCAGACGGTCAGCCTCCTCCACAAGACTGCTT 1466
Query 1888 GCACTGGTGCATGCCAGGACCAGTCGATACATGGAACGAAATGGT-CTTGGAGCTCATAA 1946
||| ||||||||||| || || || || ||||||||||| ||||| || |||| | ||||
Sbjct 1467 GCATTGGTGCATGCCGGGGCCGGTAGACACATGGAACGAGATGGTTCT-GGAGATTATAA 1525
Query 1947 GGAGAGA 1953
| |||||
Sbjct 1526 GAAGAGA 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83379546305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5