BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25370.1
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492293 jgi|Araly1|492293|fgenesh2_kg.7__1726__AT4G25370.1 1284 0.0
> Ahg492293 jgi|Araly1|492293|fgenesh2_kg.7__1726__AT4G25370.1
Length=993
Score = 1284 bits (695), Expect = 0.0
Identities = 920/1020 (90%), Gaps = 49/1020 (5%)
Strand=Plus/Plus
Query 32 GAGTGAAAATGGCGTCGTACAC---AGTCTCCTTTATCCCTTTGACGCTCTCTAATCCTC 88
|||||||||||||||||||||| ||| |||||||||||| ||||| ||||||||||||
Sbjct 1 GAGTGAAAATGGCGTCGTACACAGTAGTATCCTTTATCCCTCTGACGGTCTCTAATCCTC 60
Query 89 GGATCTTTGTTTCGAGACAGAATGGATCTCCCTCGTCTTCTTCTCGGATTCCTCTAACGT 148
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || |
Sbjct 61 GGATCTTTGTTACGAGACAGAATGGATCTTCCTCGTCTTCTTCTCGGATTCCTCTTACAT 120
Query 149 CTTCTCTGTTAGGTAAGAAGCTTCTGGCGACACAACCGTCGCATCGCTGCTTCGTCCCCA 208
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 121 CTTCTCTGTTAGGTAAGAAGCTTGTGGCGACACAACCGTCGCATCGGTGCTTCGTCCCCA 180
Query 209 AGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCGCAACCGGAGA 268
||||||||||||||||||| || |||||||||||||| || || | ||||||||||||||
Sbjct 181 AGCTCCGGTGCTTGACCTCAGCTAGCACGGTCTTAAATGTTCCAACTGCGCAACCGGAGA 240
Query 269 ATGGTTCTTCGGATAAGATCCCAAAATGGTCGGCGAGAGCTATAAAGTCACTTGCAATGG 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGGTTCTTCGGATAAGATCCCAAAATGGTCGGCGAGAGCTATAAAGTCACTTGCAATGG 300
Query 329 GAGAATTGGAGGCTAGGAAGCTCAAGTATCCAAGTACCGGGACCGAAGCCATTCTCATGG 388
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGAATTGGAGGCTAGGAAGCTTAAGTATCCAAGTACCGGGACCGAAGCCATTCTCATGG 360
Query 389 GTATTTTAGTCGAAGGCACTAGCACAGTTGCTAAGTTCCTGAGGGGGAATGGAGTCACAC 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 361 GTATTTTAGTCGAAGGCACTAGCACAGTTGCTAAGTTCCTGAGGGGGAATGGAGTTACGC 420
Query 449 TTTTCAAGGTTCGAGATGAGACGTTAAGCCTGCTGGGGAAATCAGACATGTACTTTTTCA 508
|||| ||||| |||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 421 TTTTTAAGGTGCGAGATGAGACGATAAGCCTGCTGGGGAAATCAGACATGTATTTTTTCA 480
Query 509 GCCCAGAGCATCCTCCTCTAACTGAGCCGGCTCAAAAGGCCATTGCCTGGGCCATTGATG 568
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 GTCCAGAGCATCCTCCTCTTACTGAACCGGCTCAAAAGGCCATTGCCTGGGCCATTGATG 540
Query 569 AGAAGAATAAATCTGATGTGGATGGGGAACTAACCACGGCCTACTTGCTTCTGGGGGTTT 628
||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 541 AGAAGAACAAATCTGGTGTGGATGGTGAACTAACCACGGCCTACTTGCTTCTGGGGATTT 600
Query 629 GGTCTCAAAAGGATTCAGCAGGCCGCCAGATTTTGGAGAAGCTCGGGTTTAACGAAGATA 688
||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 601 GGTATCAAAAGGATTCAGCAGGCCGCCAGATTTTGGAGAAGCTCGGGTTCAACCAAGATA 660
Query 689 AAGCCAAAGAAGTTGAGAAATCGATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAG 748
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 661 AAGCCAAAGAAGTTGAGAAATCAATGAATGAAGATGTTGATTTGAGCTTCAAGAAACAAG 720
Query 749 GTCAATAGTGATGAGGTTTATATCGATTAGAAAAGCTTCTGTAATTGTTATGGAGTAGCA 808
|||||||||| ||||||| | | | ||||||||| ||| || | | | |
Sbjct 721 GTCAATAGTGCTGAGGTT-A-A--G----------CTTCTGTAACTGT-AT--A-TGG-A 761
Query 809 AAAGCAACTCTTGATTAAAGACTCGGCCAAAG-ACCCCA--CTTTCATTAGTATTCACTT 865
| |||||||||||||||| || |||| ||||| |||||||||| ||||||||
Sbjct 762 ---G----TCTTGATTAAAGACTCAGCAAAAGGACCCCTTTCTTTCATTAGCATTCACTT 814
Query 866 TCCATACTTGTTTGTGGTTAG-TGTCATTTAGCTTTTCCG------CA-TT-ATCACAAT 916
|| |||||||||||||||||| | |||||||||||||| | || || ||||||||
Sbjct 815 TCAATACTTGTTTGTGGTTAGCT-TCATTTAGCTTTTCTGTATTATCAGTTTATCACAAT 873
Query 917 ATACAACTCTGGCAAATGATTCAGTGCTTTGGTTCTCCGATAGGTTT-TT--GTTACTAA 973
|||||||||||| ||||||||||||| |||| ||||| ||||||||| || ||||||||
Sbjct 874 ATACAACTCTGGAAAATGATTCAGTGATTTGATTCTCGGATAGGTTTATTATGTTACTAA 933
Query 974 AACTCACGTCCTC---TG-TTGATTATTGACACCTTGGTGTCTTCATATGGATGCTGGGT 1029
|||| || ||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 934 AACTTACATCCTCAAATTCTTCATTATTGACACCTTGGTGTCTTCATATGGATGCTGGGT 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38923498257
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5