BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G25380.1

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945551 jgi|Araly1|945551|scaffold_701780.1                        549    5e-156


> Ahg945551 jgi|Araly1|945551|scaffold_701780.1
Length=455

 Score =  549 bits (297),  Expect = 5e-156
 Identities = 339/359 (94%), Gaps = 4/359 (1%)
 Strand=Plus/Plus

Query  37   GGCTGTGGACTCTACGGCA-CCCGAGTGAACAACAATCTATGCTCTCTCTGCTACAAAAA  95
            ||||||||||||||||| | |||||  ||||||||||||||||||||||||||||||| |
Sbjct  78   GGCTGTGGACTCTACGG-AGCCCGAAAGAACAACAATCTATGCTCTCTCTGCTACAAACA  136

Query  96   GAGTGTTCTTCAACACTCGCCCGCTTTAAGATTCGAACCCGAGACCGAGCAATCACAGTG  155
             |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct  137  CAGTGTTCTTCAACACTCGACCGCTTTAAGATTCGAACCCGAGATCGAGCAATCACAGTG  196

Query  156  TTGCCCTCCTACGAA-TAGTCCCGCCGTTGAAGAAGAACCGGTCaaaaaaaGGAGATGTG  214
            |||||||| ||| || |||||||| || ||||||||||||||||| ||||||||||||||
Sbjct  197  TTGCCCTCTTAC-AAGTAGTCCCGTCGCTGAAGAAGAACCGGTCAGAAAAAGGAGATGTG  255

Query  215  GGATATGTAAGAGGAAGGTAGGAATGTTGGGATTCAAGTGTAGATGTGGACACATGTTTT  274
            |||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct  256  GGATATGTAAGAGGAAGGTAGGAATGTTGGCATTCAACTGTAGATGCGGACACATGTTTT  315

Query  275  GCGGGTCACATCGTTATCCGGAGGAGCATTCTTGTCCCTTTGATTACAAACAATCTGGAC  334
            ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  316  GCGGGTCACATCGGTATCCGGAGGAGCATTCGTGTCCCTTTGATTACAAACAATCTGGAC  375

Query  335  GGCTCGCCTTGGCCACACAGTTGCCTTTGATCAGAGCTGACAAGTTGCAGAGGTTTTAG  393
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  376  GGCTCGCCTTGGCCACACAGTTGCCTTTGAACAGAGCTGACAAGTTGCAGAGGTTTTAG  434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14079412341


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5