BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25380.1 Length=393 Score E Sequences producing significant alignments: (Bits) Value Ahg945551 jgi|Araly1|945551|scaffold_701780.1 549 5e-156 > Ahg945551 jgi|Araly1|945551|scaffold_701780.1 Length=455 Score = 549 bits (297), Expect = 5e-156 Identities = 339/359 (94%), Gaps = 4/359 (1%) Strand=Plus/Plus Query 37 GGCTGTGGACTCTACGGCA-CCCGAGTGAACAACAATCTATGCTCTCTCTGCTACAAAAA 95 ||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| | Sbjct 78 GGCTGTGGACTCTACGG-AGCCCGAAAGAACAACAATCTATGCTCTCTCTGCTACAAACA 136 Query 96 GAGTGTTCTTCAACACTCGCCCGCTTTAAGATTCGAACCCGAGACCGAGCAATCACAGTG 155 |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 137 CAGTGTTCTTCAACACTCGACCGCTTTAAGATTCGAACCCGAGATCGAGCAATCACAGTG 196 Query 156 TTGCCCTCCTACGAA-TAGTCCCGCCGTTGAAGAAGAACCGGTCaaaaaaaGGAGATGTG 214 |||||||| ||| || |||||||| || ||||||||||||||||| |||||||||||||| Sbjct 197 TTGCCCTCTTAC-AAGTAGTCCCGTCGCTGAAGAAGAACCGGTCAGAAAAAGGAGATGTG 255 Query 215 GGATATGTAAGAGGAAGGTAGGAATGTTGGGATTCAAGTGTAGATGTGGACACATGTTTT 274 |||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| Sbjct 256 GGATATGTAAGAGGAAGGTAGGAATGTTGGCATTCAACTGTAGATGCGGACACATGTTTT 315 Query 275 GCGGGTCACATCGTTATCCGGAGGAGCATTCTTGTCCCTTTGATTACAAACAATCTGGAC 334 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 316 GCGGGTCACATCGGTATCCGGAGGAGCATTCGTGTCCCTTTGATTACAAACAATCTGGAC 375 Query 335 GGCTCGCCTTGGCCACACAGTTGCCTTTGATCAGAGCTGACAAGTTGCAGAGGTTTTAG 393 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 376 GGCTCGCCTTGGCCACACAGTTGCCTTTGAACAGAGCTGACAAGTTGCAGAGGTTTTAG 434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14079412341 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5