BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25390.1
Length=2228
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945550 jgi|Araly1|945550|scaffold_701779.1 2928 0.0
> Ahg945550 jgi|Araly1|945550|scaffold_701779.1
Length=1990
Score = 2928 bits (1585), Expect = 0.0
Identities = 1865/2001 (93%), Gaps = 16/2001 (1%)
Strand=Plus/Plus
Query 131 CTTCGGTTTACTAAATCTC-TATGCCGTCACGATCAATCTCGGCACCGGTTCCGGTTCTT 189
||||||||||||||||| | ||||||||||||| |||||||||| |||||||| |
Sbjct 1 CTTCGGTTTACTAAATC-CATATGCCGTCACGACCAATCTCGGCGCCGGTTCC-G----- 53
Query 190 GCTCCGGCTCCGATCGTTTCCTCTTTAGTCCCAGCAGCGCCGTCAGGACATCAGAATAAG 249
|||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |
Sbjct 54 GCTCCGGCTCCGATCGTTACCTCTTTAGCCCCAGCAGCGCCGTTGGGACATCAGAATAGG 113
Query 250 ACAACGCGAATCTTTCCACCGTTCGTGGTGGCTGGAGCCGGCGCCGGTTTCTCTCTTTTC 309
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||
Sbjct 114 ACAACGCGAATCTTTCCACCGTTAGTGGCGGCTGGAGCCGGCGCCGGTTTCTCTCTCTTC 173
Query 310 ATCACTCTCTCCGTCTGTTTCTGTAAATTCAGCCGGAAACGTTCATCACCTCCGGCGGAA 369
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 174 ATCACTCTCTCCGTCTGTTTCTGCAAATTCAGCCGGAAACGTTCATCACCTCCGGCGGAA 233
Query 370 AACGCTTCCTCTTCGCCTCGGAGACCGTCGCCACGTGAGTTTTCATATTCGTCTCTCCGT 429
||||| |||||||||||||||| | | |||||||||||||||| |||||||||||||||
Sbjct 234 AACGCCTCCTCTTCGCCTCGGAAATCACCGCCACGTGAGTTTTCCTATTCGTCTCTCCGT 293
Query 430 CGCGCCACCGGTTCTTTCTCG-CAGGCGAATAGACTAGGTCAGGGCGGATTTGGCGTCGT 488
||||||||||| ||||||||| || |||||| | |||||||| |||||||| ||||||||
Sbjct 294 CGCGCCACCGGCTCTTTCTCGCCA-GCGAATCGTCTAGGTCAAGGCGGATTCGGCGTCGT 352
Query 489 GTTTCGTGGAACTATCTCCGGCGGCGAGAATGTAGCTGTTAAAGTAATGGATTCAGGATC 548
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 353 ATTTCGTGGAACTATCTCCGGCGGCGAGAATGTCGCCGTTAAAGTAATGGATTCAGGATC 412
Query 549 TCTTCAAGGAGAAGGTGAGTTTCAGAACGAGTTGTTCTTCGCCGCCAAGCTTGACTCGCC 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TCTTCAAGGAGAAGGTGAGTTTCAGAACGAGTTGTTCTTCGCCGCCAAGCTTGACTCGCC 472
Query 609 TCACGTTGTCCCTGTTATTGGTTTCTCTCATGATCGAAAACGACGACGTTTGCTTCTTGT 668
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 473 TCACGTTGTCCCTGTTATTGGCTTCTCTCACGATCGAAAACGACGACGTTTGCTTCTTGT 532
Query 669 TTACAAGCTTATGGACAATGGTAATCTCCAAGACGCCTTGCTTCACCGGAGATGCCCTGA 728
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 533 TTACAAGCTCATGGACAATGGTAACCTCCAAGACGCGTTGCTTCACCGGAGATGCCCTGA 592
Query 729 GCTTATGGATTGGAATCGGAGGTTTTTGGTTGCCGTTAACATTGCCGATGGGATTAAGCA 788
||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||
Sbjct 593 GCTTATGGATTGGAATCGGAGGTTTTTGGTTGCGGTTAACGTTGCGGATGGGATTGAGCA 652
Query 789 TCTTCATAGTCTTGAACCACCTGTGATTCATGGTGATATTAAGCCTAGCAATGTTCTATT 848
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 653 CCTTCATAGTCTTGAACCACCTGTGATTCATGGTGATATAAAGCCTAGCAATGTTCTATT 712
Query 849 AGATAGTCTCTTCTCTGCCAAAATCGCTGATTTTGGTTTGGCTAGGTTGAAAGCAGAGCA 908
|||| ||||||||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 713 GGATAATCTCTTCTCTGCCAAAATCGCTGATTTTGGTCTGGCTAGGTTGAAACCGGAGCA 772
Query 909 AGTGGAGATTAGTGTAGCTCCGGAGCGTGATGGTGATGGATCTATGGTTGAAGAAGTAGA 968
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AGTGGAGATTACTATAGCGCCGGAGCGTGATGGTGATGGATCTATGGTTGAAGAAGTAGA 832
Query 969 GAGTGTGGTAACTACTGTGACTGGTTATGAAGATTTTAACTTTGGGTTGGTTGATCAGTC 1028
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 CAGTGTGATAACTACTGTGACTGGTTATGAAGATTTTAACTTTGGGTTGGTTGATCAGTC 892
Query 1029 TCCGGAGA-GTGTTGCTAAGGTTCCTGGGTCTGTGAGTGCTTCTCCTGAGGC-GACGACG 1086
|||| || |||||||||||||||||||||||||||||||||| || ||| | | |||||
Sbjct 893 GCCGG-GAAGTGTTGCTAAGGTTCCTGGGTCTGTGAGTGCTTCGCCGGAGACTG-CGACG 950
Query 1087 GTTGTCTCTGTTTCTCCGGAAATGGGAGAGAAAACGGATGAGGATGGTGGTAGTGTTGTG 1146
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 951 GTTGTCTCTGTTTCTCCGGAAATGGGGGAGAAAACGGATGAGGATGGTGGTAATGTGGTG 1010
Query 1147 GTGATGAAGAAGGGGAAAGAGAGTGAGAGCAAAGATTGGTGGTGGAAGCAGGAGAGCAAT 1206
|||| |||||||||||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 1011 GTGACAAAGAAGGGGAAAGAGACTGAGAGTAGAGATTGGTGGTGGAAGCAGGAGAGCAAT 1070
Query 1207 GTTGAAAGAGGGAGAGTGAAAGAGTATGTAATGCAATGGATTGGTTCAGAGGTAAAGAAG 1266
||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1071 GTTGAAAGAGGGAAAGTGAAGGAGTATGTGATGCAATGGATTGGTTCAGAGGTTAAGAAG 1130
Query 1267 GAGAGACCAAGCAGAAGT-GATTGGATTGAGGCGGCAGCTTTGTCTTCTTCGTCAAGTAA 1325
|||||||| |||||| | || |||||||||||| ||||||||||||| |||||||||||
Sbjct 1131 GAGAGACCGAGCAGA-GCCGACTGGATTGAGGCGACAGCTTTGTCTTCGTCGTCAAGTAA 1189
Query 1326 GAAACTTGAGAAGAAGACTAGCAAGAGACTAGATTGGTGGTTGTCATTGGAGGAAGAGGA 1385
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1190 GAAACTTGAGAAGAAGACTAGCAAGAGACTAGAATGGTGGTTGTCACTAGAGGAAGAGGA 1249
Query 1386 TGAGAATAAGAAGAAGAAGAAGCGGAGGATGGTTAGAGAGTGGTGGAAAGATGAGTATCG 1445
|||||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1250 TGAGAAGAATAAGAGGAAGAAGCGGAGGATGGTTAGGGAGTGGTGGAAAGATGAGTATCG 1309
Query 1446 TAGAGAACTCGCTaagaaaaggaagaagaagaagaagaTGACTTTAGAAGCCGAGTTTTG 1505
|||||||||||||||||||| ||||||||||||||||| |||||||||||| || |||||
Sbjct 1310 TAGAGAACTCGCTAAGAAAAAGAAGAAGAAGAAGAAGACGACTTTAGAAGCTGAATTTTG 1369
Query 1506 TAGTGATGATGGGAGTAGTAGTGTGAGTCAATGGCGGCGTGGTAGTGGTAGTGGTAGCAG 1565
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 TAGTGATGATGGAAGTAGTAGTGTGAGTCAATGGCGGCGTGGTAGTGGTAGTGGTAGCAG 1429
Query 1566 CATAGATTGGTGGTTAGATGGGTTAAGTGGTGAACGATGGTTGAGAGCAAGGGGAAATAG 1625
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1430 CATAGATTGGTGGTTAGATGGGTTAAGTGGTGAACGGTGGTCGAGAGCAAGGGGAAATAG 1489
Query 1626 CCATGACTCGGTGAGCGGTGAGATAGCTAAGAGCTGCGGAATTAGTAGCACGCCGAGCAT 1685
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1490 CCATGACTCGGTGAGCGGTGAGATAGCTAAGAGCTGCGGAATCAGTAGCACGCCGAGCAT 1549
Query 1686 GAGAGGGACTGTGTGCTATGCAGCTCCTGAGTACTGTAACTTGGACAACAACGTGTCAGA 1745
|||||| || |||||||||||||| |||||||| |||||||| || ||||| ||||| ||
Sbjct 1550 GAGAGGAACCGTGTGCTATGCAGCGCCTGAGTATTGTAACTTAGAAAACAATGTGTCTGA 1609
Query 1746 GAAATGTGATGTCTATAGCTACGGTGTTCTGTTGTTAGTTCTGATTTCCGGGAGGCGCCC 1805
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 GAAATGCGATGTCTATAGCTACGGTGTTCTGTTGTTAGTTCTGATTTCCGGGAGGCGCCC 1669
Query 1806 GTTGGAGATGACGGGCTCCGCGAGTGAGATACAACGGGCAAACCTCATGTCTTGGGCGAG 1865
|||||||||||| || |||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 1670 GTTGGAGATGACAGGATCCGCGAGCGAGATCCAAAGGGCAAACCTCATGTCTTGGGCGAG 1729
Query 1866 GAAGTTGGCGAGAAGAGGAAAACTTGTTGATCTTGTGGATCAAAAGTTGCAAAACTTAGA 1925
|||| ||||||| ||||| ||||| |||||||||| || |||||||||||||| |||||
Sbjct 1730 GAAGCTGGCGAGGAGAGGGAAACTACTTGATCTTGTAGACCAAAAGTTGCAAAATTTAGA 1789
Query 1926 CCAAGAACAAGCAGTGTTGTGCATAAAGGTGGCTTTGTTGTGTCTGCAAAGATTACCGAT 1985
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 1790 CCAAGAACAAGCAGTGTTGTGCATAAAGGTGGCCTTGTTGTGTCTGCAAAGGTTGCCGAT 1849
Query 1986 TTCACGACCGTCAATGAAAGAGGTCTTGGGAATGCTTAAAGGAGAAGTGAATCTACCAGA 2045
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1850 TTCACGACCGTCAACGAAAGAGGTTTTGGGAATGCTTAAAGGAGAAGTGAATCTACCAGA 1909
Query 2046 GTTGCCTAGTGAGTTCTCACCATCGCCACCATTAAAGACAACGAGGAAGCAGCGCCGTTG 2105
|||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1910 GTTGCCTACCGAGTTCTCACCATCGCCTCCATTGAAGACGGTGAGGAAGCAGCGCCGTTG 1969
Query 2106 ACTAATTTAGGAATCATTTTG 2126
| ||| ||| |||||| ||||
Sbjct 1970 ATTAACTTAAGAATCACTTTG 1990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83874719490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5