BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G25400.1

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492289 jgi|Araly1|492289|fgenesh2_kg.7__1722__AT4G25400.1         715    0.0  


> Ahg492289 jgi|Araly1|492289|fgenesh2_kg.7__1722__AT4G25400.1
Length=551

 Score =  715 bits (387),  Expect = 0.0
 Identities = 511/567 (90%), Gaps = 24/567 (4%)
 Strand=Plus/Plus

Query  1    ATGGAGAAGTTAGTACATAAAGAAATTGAGAAACGAAGGAGACAAGAAATGGCTTCTCTC  60
            ||||||||   |||||| |||||| ||||||||| |||||||||||||||||||||||| 
Sbjct  1    ATGGAGAA---AGTACACAAAGAAGTTGAGAAACAAAGGAGACAAGAAATGGCTTCTCTT  57

Query  61   TACGCGTCTCTCCGCTCTCTTCTCCCT-TTAGAGTTCATCCAGGGAAAACGTTCAAC-GT  118
            ||| ||||||||||||||||||| ||| || ||||||||||||||||| ||||| || | 
Sbjct  58   TACACGTCTCTCCGCTCTCTTCT-CCTGTTGGAGTTCATCCAGGGAAAGCGTTCGACAG-  115

Query  119  CAGATCAGGTGAAAGGGGCAGTGAATTACATAGACTATTTGCAAAGGAATATCAAAGACA  178
            ||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||
Sbjct  116  CAGATCAGGTGAACGGGGCGGTGAATTACATTGAGTATTTGCAAAGGAATATCAAGGACA  175

Query  179  TAAATTCCAAGAGAGATGACCTCGTGTTATTGTCTGGACGAAGCTTTAGGAGTAGTAATG  238
            ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  176  TAAGTTCCAAGAGAGATGACCTCGTGTTATTGTCTGGACGAAGCTTTGGGAGTAGTAATG  235

Query  239  AACAAGAATGGAATGAGATTTCGAATCATGTCGTG---ATTCGTCCGTGTTTGGTCGGCA  295
            ||||||| |||||| ||||||||||||||||||||   |||||||||||||||||||| |
Sbjct  236  AACAAGACTGGAATCAGATTTCGAATCATGTCGTGATCATTCGTCCGTGTTTGGTCGGGA  295

Query  296  TAGAGATAGTGTTGAGCATTCTCCAAACGCCATTCTCAAGCGTTCTGC-AAGTGCTTCGT  354
            |||| || || || ||| ||||||||||||| |||||||||||||| | ||||| |||||
Sbjct  296  TAGAAATCGTATTTAGCGTTCTCCAAACGCCGTTCTCAAGCGTTCT-CAAAGTGATTCGT  354

Query  355  GAACACGGTCTCTATGTTCTTGGCTACATCTGTTCCAGTGTAAATGAT-AGACTCATTCA  413
            ||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct  355  GAACACGGTCTCTGTGTTCTTGGCTGCATCTCTTCCAGTGTAAATGATAAGACTCATTCA  414

Query  414  TACTCTACAGGCTGAGGTCAACGATCTGGCTTTGATCGACTTAGCAGACCTTAAGGATAC  473
             |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  CACTCTACAGGCTGA-GTCAACGATCTGGCTTTGATCGACTTAGCAGACCTTAAGGATAC  473

Query  474  ACTTACCCTGATGAAGTAATTCAAATAATCAAACGttttttttCAGTAGATTCCTTTTAA  533
            ||||||||| ||||||||||| |||    |    |||||||| |||||||||||||||||
Sbjct  474  ACTTACCCTAATGAAGTAATT-AAA----C----GTTTTTTT-CAGTAGATTCCTTTTAA  523

Query  534  CTTCTCAAACCAAAACGATGTATATAT  560
            |||||| ||||||||||||||| ||||
Sbjct  524  CTTCTCCAACCAAAACGATGTACATAT  550



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22873750200


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5