BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25410.1 Length=778 Score E Sequences producing significant alignments: (Bits) Value Ahg354244 jgi|Araly1|354244|fgenesh1_pg.C_scaffold_7001417 935 0.0 > Ahg354244 jgi|Araly1|354244|fgenesh1_pg.C_scaffold_7001417 Length=669 Score = 935 bits (506), Expect = 0.0 Identities = 616/667 (92%), Gaps = 15/667 (2%) Strand=Plus/Plus Query 18 ATGGATCCTTATAAGAATCTTAATCCAAAAGGTTACCAGAGACAGAGACCGTTTAGCTCA 77 |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGATCCTTATCAGAATCTTAATCCGAAAGGGTACCAGAGACAGAGACCGTTTAGCTCA 60 Query 78 GCCGGCGAGAGTGGCGGCAGCGGCGGCTCCGGTACGGCC-CATGAAACAGATGACAATAA 136 |||||||| | ||| ||||||||||||| |||| ||| |||||||||||||||||||| Sbjct 61 TCCGGCGAGGGCGGCAGCAGCGGCGGCTCAGGTA-TGCCACATGAAACAGATGACAATAA 119 Query 137 GAAGAAGAAGAAGCTTCTCCACCGCGACATCGAACGCCAAAGAAGACAAGAAATGGCTAC 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GAAGAAGAAGAAGCTTCTCCACCGCGACATCGAACGCCAAAGAAGACAAGAAATGGCTAC 179 Query 197 ACTCTTTGCTACTCTTCGTACTCA-CTTACCTCTTAAATACATCAAGGGAAAAAGAGCTG 255 |||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| Sbjct 180 ACTCTTTGCTACTCTTCGTACTCAGCT-ACCTCTCAAATACATCAAGGGAAAAAGAGCTG 238 Query 256 TGTCGGATCATGTAAATGGAGCGGTAAATTTCATTAAGGACACGGAAGCACGGATTAAAG 315 | |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||| Sbjct 239 TTTCGGATCATGTAAACGGAGCGGTAAATTTCATAAAGGACACGGAAACACGGATTAAAG 298 Query 316 AACTTAGTGCAAGAAGAGACGAGT-TAAGTAGAGAAACCGGCCA-AGGATATAAATCGAA 373 |||||||||||||||||||||| | ||||||||||||| || || || ||||||||| || Sbjct 299 AACTTAGTGCAAGAAGAGACGA-TCTAAGTAGAGAAACAGGTCAGAG-ATATAAATCCAA 356 Query 374 TCCGGATCCAGGAAA-A--ACTGGATCCGATGTAGGCAAATCGGAGCCGGCGACTGTGAT 430 ||||||| ||| ||| | |||||||||||| |||||| ||||||||||||||||||||| Sbjct 357 TCCGGATTCAGCAAACAGTACTGGATCCGATTTAGGCAGATCGGAGCCGGCGACTGTGAT 416 Query 431 GGTGCAACCACACGTGAGCGGTTTAGAAGTGGTAGTGAGCAGCAACTCCTCAGGCCCCGA 490 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 417 GGTGCAACCACACGTGAGCGGTTTAGAAGTGGTAGTGAGCAGCAAATCCTCAGGTCCCGA 476 Query 491 AGCTTTGCCACTATCAAAAGTGCTCGAGACAATTCAGGAGAAAGGGCTTGAAGTCATGAG 550 ||||||||| || |||| ||||||| ||||| |||||||||||||||||||||| ||||| Sbjct 477 AGCTTTGCCTCTCTCAAGAGTGCTCAAGACACTTCAGGAGAAAGGGCTTGAAGTAATGAG 536 Query 551 CTC-CTTCACTACAAGAGTCAATGATAGGCTCATGCACACTATTCAAGTAGAGGTTAATA 609 ||| || ||| |||||||||||||| |||| ||||||||||||||||| |||||||||| Sbjct 537 CTCTCT-CACCACAAGAGTCAATGAGCGGCTTATGCACACTATTCAAGTCGAGGTTAATA 595 Query 610 GTTTCGGATGCATAGACTTAT-TATGGTTGCAGCAGAAGCTAGTTGAGGATTTGATACTT 668 |||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||| Sbjct 596 GTTTCGGATGCATAGACTTAGCT-TGGTTGCAGCAAAAGCTAGTTGAGGATTTGATACTT 654 Query 669 TCGACGG 675 ||||||| Sbjct 655 TCGACGG 661 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28706556501 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5