BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25410.1
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354244 jgi|Araly1|354244|fgenesh1_pg.C_scaffold_7001417 935 0.0
> Ahg354244 jgi|Araly1|354244|fgenesh1_pg.C_scaffold_7001417
Length=669
Score = 935 bits (506), Expect = 0.0
Identities = 616/667 (92%), Gaps = 15/667 (2%)
Strand=Plus/Plus
Query 18 ATGGATCCTTATAAGAATCTTAATCCAAAAGGTTACCAGAGACAGAGACCGTTTAGCTCA 77
|||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGATCCTTATCAGAATCTTAATCCGAAAGGGTACCAGAGACAGAGACCGTTTAGCTCA 60
Query 78 GCCGGCGAGAGTGGCGGCAGCGGCGGCTCCGGTACGGCC-CATGAAACAGATGACAATAA 136
|||||||| | ||| ||||||||||||| |||| ||| ||||||||||||||||||||
Sbjct 61 TCCGGCGAGGGCGGCAGCAGCGGCGGCTCAGGTA-TGCCACATGAAACAGATGACAATAA 119
Query 137 GAAGAAGAAGAAGCTTCTCCACCGCGACATCGAACGCCAAAGAAGACAAGAAATGGCTAC 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAAGAAGAAGAAGCTTCTCCACCGCGACATCGAACGCCAAAGAAGACAAGAAATGGCTAC 179
Query 197 ACTCTTTGCTACTCTTCGTACTCA-CTTACCTCTTAAATACATCAAGGGAAAAAGAGCTG 255
|||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 180 ACTCTTTGCTACTCTTCGTACTCAGCT-ACCTCTCAAATACATCAAGGGAAAAAGAGCTG 238
Query 256 TGTCGGATCATGTAAATGGAGCGGTAAATTTCATTAAGGACACGGAAGCACGGATTAAAG 315
| |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 239 TTTCGGATCATGTAAACGGAGCGGTAAATTTCATAAAGGACACGGAAACACGGATTAAAG 298
Query 316 AACTTAGTGCAAGAAGAGACGAGT-TAAGTAGAGAAACCGGCCA-AGGATATAAATCGAA 373
|||||||||||||||||||||| | ||||||||||||| || || || ||||||||| ||
Sbjct 299 AACTTAGTGCAAGAAGAGACGA-TCTAAGTAGAGAAACAGGTCAGAG-ATATAAATCCAA 356
Query 374 TCCGGATCCAGGAAA-A--ACTGGATCCGATGTAGGCAAATCGGAGCCGGCGACTGTGAT 430
||||||| ||| ||| | |||||||||||| |||||| |||||||||||||||||||||
Sbjct 357 TCCGGATTCAGCAAACAGTACTGGATCCGATTTAGGCAGATCGGAGCCGGCGACTGTGAT 416
Query 431 GGTGCAACCACACGTGAGCGGTTTAGAAGTGGTAGTGAGCAGCAACTCCTCAGGCCCCGA 490
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 417 GGTGCAACCACACGTGAGCGGTTTAGAAGTGGTAGTGAGCAGCAAATCCTCAGGTCCCGA 476
Query 491 AGCTTTGCCACTATCAAAAGTGCTCGAGACAATTCAGGAGAAAGGGCTTGAAGTCATGAG 550
||||||||| || |||| ||||||| ||||| |||||||||||||||||||||| |||||
Sbjct 477 AGCTTTGCCTCTCTCAAGAGTGCTCAAGACACTTCAGGAGAAAGGGCTTGAAGTAATGAG 536
Query 551 CTC-CTTCACTACAAGAGTCAATGATAGGCTCATGCACACTATTCAAGTAGAGGTTAATA 609
||| || ||| |||||||||||||| |||| ||||||||||||||||| ||||||||||
Sbjct 537 CTCTCT-CACCACAAGAGTCAATGAGCGGCTTATGCACACTATTCAAGTCGAGGTTAATA 595
Query 610 GTTTCGGATGCATAGACTTAT-TATGGTTGCAGCAGAAGCTAGTTGAGGATTTGATACTT 668
|||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 596 GTTTCGGATGCATAGACTTAGCT-TGGTTGCAGCAAAAGCTAGTTGAGGATTTGATACTT 654
Query 669 TCGACGG 675
|||||||
Sbjct 655 TCGACGG 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28706556501
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5