BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25420.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492287 jgi|Araly1|492287|fgenesh2_kg.7__1720__AT4G25420.1 1796 0.0
Ahg495246 jgi|Araly1|495246|fgenesh2_kg.8__1062__AT5G51810.1 754 0.0
> Ahg492287 jgi|Araly1|492287|fgenesh2_kg.7__1720__AT4G25420.1
Length=1164
Score = 1796 bits (972), Expect = 0.0
Identities = 1105/1169 (95%), Gaps = 9/1169 (1%)
Strand=Plus/Plus
Query 39 AATCTCTCAAAATGGCCGTAAGTTTCGTAACAACATCTCCTGAGGAAGAAG-A--CAAAC 95
||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 AATCTCTGAAAATGGCCGTAAGTTTCGTAACAACATCTCCTGAGGAAGAAGAAGCCAAAC 60
Query 96 CGAAGCTAGGCCTTGGAAATATTCAAACTCCGTTAATCTTCAACCCTTCAATGCTTAACC 155
| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 61 CCAAACTAGGCCTTGGAAATATTCAAACTCCATTAATCTTCAATCCTTCAATGCTTAACC 120
Query 156 TTCAAGCCAATATCCCAAACCAATTCATCTGGCCTGACGACGAAAAACCTTCCATCAACG 215
||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 121 TTCAACCCAATATCCCTAACCAATTCATTTGGCCTGACGACGAAAAACCTTCCATCGACG 180
Query 216 TTCTCGAGCTTGATGTTCCTCTCATCGACCTTCAAAACCTTCTCTCTGATCCATCCTCCA 275
| | |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||
Sbjct 181 TACCCGAGCTTGATGTTCCTCTCATCGATCTTCAAAACCTTCTCTCTGCTCCTTCCTCCA 240
Query 276 CTTTAGATGCTTCGAGACTGATCTCTGAGGCCTGTAAGAAGCACGGTTTCTTCCTCGTGG 335
||||||| ||||| |||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 241 CTTTAGAAGCTTCCAGACAAATCTCCGAGGCCTGTAAGAAGCACGGGTTCTTCCTCGTGG 300
Query 336 TCAATCACGGCATCAGCGAGGAGCTTATTTCAGACGCTCATGAATACACGAGCCGCTTCT 395
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 301 TCAATCACGGCATCAGCGAGAAGCTTATATCAGACGCTCATGAATACACGAGCCGTTTCT 360
Query 396 TTGATATGCCTCTCTCCGAAAAACAGAGGGTTCTTAGAAAATCCGGTGAGAGTGTTGGCT 455
|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||
Sbjct 361 TTGATATGCCTCTCTCTGAAAAACAGAGGGTTCTTAGAAAACCCGGCGAGAGTGTTGGCT 420
Query 456 ACGCAAGCAGTTTCACCGGACGCTTCTCCACCAAGCTTCCATGGAAGGAGACCCTTTCTT 515
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 ACGCAAGCAGTTTCACCGGCCGCTTCTCCACCAAGCTTCCATGGAAGGAAACCCTTTCTT 480
Query 516 TCCGGTTTTGCGACGACATGAGCCGCTCAAAATCCGTTCAAGATTACTTCTGCGATGCGT 575
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 TCCGGTTTTGCGACGACAAGAGCCGCTCAAAATCTGTTCAAGATTACTTCTGCGATGCGT 540
Query 576 TGGGACATGGGTTTCAGCCATTTGGGAAGGTGTATCAAGAGTATTGTGAAGCAATGAGTT 635
|||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 541 TGGGACATGGGTTTGAGCCATTTGGGAAGGTGTATCAAGAGTACTGTGAGGCAATGAGTT 600
Query 636 CTCTATCACTGAAGATCATGGAGCTTCTGGGGCTAAGTTTAGGCGTAAAACGGGACTACT 695
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 CTCTCTCACTGAAGATCATGGAGCTTCTGGGGCTAAGTTTAGGCGTAAACCGGGACTACT 660
Query 696 TTAGAGAGTTTTTCGAAGAAAACGATTCAATAATGAGACTGAATTACTACCCTCCATGTA 755
||||||| ||||||| |||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 661 TTAGAGACTTTTTCGGAGAAAATGATTCAATTATGAGACTGAACTACTACCCTCCATGT- 719
Query 756 TA-AAACCAGATCTCACACTAGGAACAGGACCTCATTGTGATCCAACATCTCTTACCATC 814
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 CAGAAACCAGATCTCACACTAGGAACAGGACCTCATTGTGATCCAACTTCTCTTACCATC 779
Query 815 CTTCACCAAGACCATGTTAATGGCCTTCAAGTCTTTGTGGAAAATCAATGGCGCTCCATT 874
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTTCACCAAGACCATATCAACGGCCTTCAAGTCTTTGTGGAAAATCAATGGCGCTCCATT 839
Query 875 CGTCCCAACCCCAAGGCCTTTGTGGTCAATATCGGCGATACTTTCATGGCTCTATCGAAC 934
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGTCCCAATCCCAAGGCCTTTGTGGTCAATATCGGCGATACTTTCATGGCTCTATCGAAC 899
Query 935 GATAGATACAAGAGCTGCTTGCACCGGGCGGTGGTGAACAGCGAGAGCGAGAGGAAATCA 994
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 900 GATAGATACAAGAGCTGCTTGCACCGGGCGGTGGTGAACAGCGAGAGTGAGAGGAAATCA 959
Query 995 CTTGCATTCTTCTTGTGTCCGAAAAAAGACAGAGTAGTGACGCCACCGAGAGAGCTTTTG 1054
|||||||||||||||||||| ||||| ||||||||||||| |||||| | ||||||||||
Sbjct 960 CTTGCATTCTTCTTGTGTCCCAAAAATGACAGAGTAGTGAAGCCACCAACAGAGCTTTTG 1019
Query 1055 GACAGCATCACATCAAGAAGATACCCTGACTTCACATGGTCTATGTTCCTTGAGTTCACT 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GACAGCATCACATCAAGAAGATACCCTGACTTCACATGGTCTATGTTCCTTGAGTTCACT 1079
Query 1115 CAGAAACATTATAGAGCAGACATGAACACTCTCCAAGCCTTTTCAGATTGGCTCACCAAA 1174
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1080 CAGAAACACTATAGAGCAGACATGAACACTCTCCAAGCCTTCTCAGATTGGCTCACCAAA 1139
Query 1175 CCCATCTAAGAAATAAAATATTCATGTCT 1203
|||| | |||||||||||| |||||||
Sbjct 1140 CCCA---A-GAAATAAAATATCCATGTCT 1164
> Ahg495246 jgi|Araly1|495246|fgenesh2_kg.8__1062__AT5G51810.1
Length=1273
Score = 754 bits (408), Expect = 0.0
Identities = 897/1127 (80%), Gaps = 57/1127 (5%)
Strand=Plus/Plus
Query 67 AACAACATCTCCTG-AG-G-AAGAAGACAAACCGAAGCTAGGCCTTGGAAATA-TTCAAA 122
|||||||||||| | || | ||||| || |||| || | || ||| |||| | ||||
Sbjct 77 AACAACATCTCCGGCAGAGAAAGAACACGAACCAAAACAAGATCTT-GAAAAAGACCAAA 135
Query 123 CTCCGTTAAT-CTTCAACCCTTCAATGCTTAACCTTCAA-GCCAATATCCCAAACCAATT 180
|||| ||||| ||| || ||||| | || ||||| ||| |||| ||||||||||| ||
Sbjct 136 CTCCATTAATCCTT-AATCCTTCCCTTCTAAACCTCCAATCCCAA-ATCCCAAACCAGTT 193
Query 181 CATCTGGCCTGACGACGAAAAACCTTCCATCAACGTTCTCGAGCTTGATGTTCCTCTCAT 240
||| ||||| ||||| || ||||||||||| || ||| |||||| | || ||| ||||
Sbjct 194 CATTTGGCCAGACGAAGAGAAACCTTCCATTGACATTCCCGAGCTCAACGTCCCTTTCAT 253
Query 241 CGACCT-TCAAAACCTTCTCTCTGATCCATCCTCCACTTTAGATGCTTCGAGACTGATCT 299
||| || || || || ||| | | || | || || ||| | ||| | |||
Sbjct 254 CGATCTCTC-AAGCCAAGACTC--A---A--CT---C-TT-GAAGCTCCTAGAGTCATCG 300
Query 300 CTGAGGCCTGTAAGAAGCACGGTTTCTTCCTCGTGGTCAATCACGGCATCAGCGAG-GAG 358
| || || || | || ||||| ||||||||||| |||||||| ||| |||||||| |
Sbjct 301 CAGAAGCTTGCACCAAACACGGCTTCTTCCTCGTCGTCAATCATGGCGTCAGCGAGTCA- 359
Query 359 CTTATTTCAGACGCTCA-TGAATACA-CGAGCCGCTTCTTTGATATGCCTCTCTCCGAAA 416
|| || || |||||||| | || | || || ||||| || ||||||||| ||| |
Sbjct 360 CTCATATCCGACGCTCACCGTTTA-ATGGA-ACGTTTCTTCGACATGCCTCTCGCCGGTA 417
Query 417 AACAGAGGGTTCTTAGAAAATCCGGTGAGAG-TGTTGGCTACGCAAGCAGTTTCACCGG- 474
|||||| | || |||||| |||||||||| || |||||||||||| || ||||||||
Sbjct 418 AACAGAAAGCTCAGAGAAAACCCGGTGAGAGCTG-TGGCTACGCAAGTAGCTTCACCGGT 476
Query 475 ACGCTTCTCCACCAAGCTTCCATGGAAGGAGACCCTTTCTTTCCGGTTTTGC-GACGA-C 532
| | |||||||||||||| |||||||||||||| || ||||| | ||||| | ||||
Sbjct 477 A-GATTCTCCACCAAGCTCCCATGGAAGGAGACTCTCTCTTTTCAGTTTT-CAAACGAGA 534
Query 533 ATGAGCCGCTCAA-AATCCGTTCAAGATTACTTCTGCGATGCGTTGGGACATGGGTTTC- 590
|| || |||||| || |||||||||||||||| | |||| | || ||||| | | |||
Sbjct 535 AT-AGTGGCTCAAGAA-CCGTTCAAGATTACTTTTCCGATACATTAGGACAAGAG-TTCG 591
Query 591 AGCCA-TTTGGGAAGGTGTATCAAGAGTATTGTGAAGCAATGAGTTCTCTATCACTGAAG 649
|| || ||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 592 AG-CAGGTTGGGAAGGTGTATCAAGACTATTGTGAAGCAATGAGTTCTCTATCACTCAAG 650
Query 650 ATCATGGAGCTTCTGGGGCTAAGTTTAGGCGTAAAACGGGACTACTTTA-GAG-AGTTTT 707
|||||||||||| ||||| |||||||||||||||| || ||||| ||| ||| | ||||
Sbjct 651 ATCATGGAGCTTATGGGGTTAAGTTTAGGCGTAAACCGAGACTA-TTTCCGAGGA-TTTT 708
Query 708 TCGAAGAAAACGATTCAATAATGAGACTGAATTACTACCCTCCATGTATAAA-ACCAGAT 766
|| |||| || ||||| |||||||| || ||| | || |||||||| ||| ||||||
Sbjct 709 TCCAAGAGAATGATTCGATAATGAGGCTCAATCATTATCCTCCATGCC-AAACACCAGAG 767
Query 767 CTCACACTAGGAACAGGACCTCATTGTGATCCAACATCTCTT-ACCATCCTTCACCAAGA 825
|||||| |||| |||||||||||||||||||||| ||| || ||||||||||| |||||
Sbjct 768 CTCACATTAGGTACAGGACCTCATTGTGATCCAAGTTCT-TTGACCATCCTTCATCAAGA 826
Query 826 CCATGTTAATGGCCTTCAAGTCTTTGTGGAAAATCAATGGCGCTCCATTCGTCCCAACCC 885
|||||| |||||||||||||||||||| || |||||||||| || ||||||||||| ||
Sbjct 827 CCATGTCAATGGCCTTCAAGTCTTTGTTGACAATCAATGGCAATCTATTCGTCCCAATCC 886
Query 886 CAAGGCCTTT-GTGGTCAATATCGGCGATACTTTCATGGCTCTATCGAACGATAGATACA 944
|||||| ||| || |||||||| || || |||||||||||||||||||||| | || ||
Sbjct 887 CAAGGC-TTTCGTTGTCAATATTGGTGACACTTTCATGGCTCTATCGAACGGGATATTCA 945
Query 945 AGAGCTGCTTGCACCGGGCGGTGGTGAACAGCGAGAGCGAGAGGAAATC-ACTTGCATTC 1003
|||| || ||||| | ||||| ||||| || || |||| ||||||||| | | || ||
Sbjct 946 AGAGTTGTTTGCATAGAGCGGTTGTGAATAGGGAAAGCGCGAGGAAATCGA-TGGCGTTT 1004
Query 1004 TTCTTGTGTCCGAAAAAAGACAGAGTAGTGACGCCACCGAGAGAGCTTTTGGACA-GCAT 1062
|||||||||||||| ||||||| ||| |||| ||||| || || ||||||| | | ||
Sbjct 1005 TTCTTGTGTCCGAAGAAAGACAAAGTGGTGAAACCACCAAGTGATATTTTGGAGAAG-AT 1063
Query 1063 CACATCAAGAAGATACCCTGACTTCACATGGTCTATGTTCCTTGAGTTCACTCAGAAACA 1122
||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1064 GACAACAAGAAAATACCCTGACTTCACTTGGTCTATGTTCCTTGAGTTCACTCAAAAACA 1123
Query 1123 TTATAGAGCAGACATGAACACTCTCCAAGCCTTTTCAGATTGGCTCA 1169
||| |||||||| |||| |||||| | |||||||| ||||| |||
Sbjct 1124 TTACAGAGCAGATGTGAATACTCTCGATTCCTTTTCAAATTGGGTCA 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5