BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25430.1
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889613 jgi|Araly1|889613|Al_scaffold_0007_1599 1245 0.0
> Ahg889613 jgi|Araly1|889613|Al_scaffold_0007_1599
Length=1401
Score = 1245 bits (674), Expect = 0.0
Identities = 1165/1386 (84%), Gaps = 98/1386 (7%)
Strand=Plus/Plus
Query 252 CTCTAAAAGCAAGAAAAACTCCAATGAAGCTAATGGCTGCGTCACTGcactttaccactt 311
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 15 CTCTAAATGCAAGAAAAAATCCAATGAAGCTAATGGCTGCGTCACTGCACTTTACCACTT 74
Query 312 ttttcatttccaccatttttactttccttcacgtcatcatcatcacc-accaACCTAGTA 370
||||||||||||||| ||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 75 TTTTCATTTCCACCAATTTTACTTTCCTTCACGTCATCATCATCACCAACCTA-GTAGTG 133
Query 371 TTGATTCTCCCTCCAGAACTCGTAAAGGCTTGGTGGCGCCACGAAACAGCTTGGACTTAT 430
|||||||| ||| ||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 134 TTGATTCTAACTCAAGAACTCCAAAAGGCTTGGTAGCACCACGAAACAGCTTGGACTTAA 193
Query 431 CAGAGGAGTCTCCATTATCAACCAACTACAAGCTGGAAAGA-GAAGGCTTGAACATCTC- 488
||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |
Sbjct 194 CAGAGGAGTCTCCATTATCAACCAACTACAAGCTGGAAA-ACGAAAGCTTGAACATC-CA 251
Query 489 TGTGGGCGGGAAAAAGTCAACACTTAGAGGTCTTCTCGTTGATACA-CCTTC-ACATAAT 546
||||||| |||| || ||||||||||||| |||||||||||||||| | || | ||||
Sbjct 252 TGTGGGCAGGAAGAATTCAACACTTAGAGCTCTTCTCGTTGATACATAC-TCTA-ATAAC 309
Query 547 TGCAACTTACCTCGCACCAAGACACCGAACGTTGTGGCTAGACTCATGGGTCTTGATCTT 606
|||| || ||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 310 TGCAGCTCACCTCGCACCAAGTCACCAAACGTTGTGGCTAGACTCATGGGTCTTGATCTT 369
Query 607 CTTCCTGATAACTTGGAGCTT-ACTAGATCA-CCAAGGAATGGAGTAAGAGGACATCGAC 664
||||| |||||||| || ||| || |||||| |||| | || | ||| |||||||| | |
Sbjct 370 CTTCCAGATAACTTAGACCTTAAC-AGATCATCCAA-GTATAGTGTACGAGGACATAGGC 427
Query 665 TCTCCGGGAATGGCTCAGGGACAAGATCATTACCTGCGAGCCCTAGGATCTCCTCTGATT 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 TCTCCGGGAATGGCTCAGGGACAAGATCATTACCTGCGAGCCCTAGGATCTCCTCTGATT 487
Query 725 CCGAAAATCATCGCCTCTCTCTTGAGCTAAACAGAGAGAACAATAAGCATGAAGAGTTTG 784
|||||||| |||||| ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 488 CCGAAAATTGCCGCCTCACTCTTCAGCTAAACAGAGAGAAGAATAAGCATGAAGAGTTTG 547
Query 785 TACGCACGAGGCTGAAAGAGTTGAAACAAGATGAGCAAAGTCCAAGTCCCAGATATAGTG 844
|| | ||||||||||||||||||||| ||||||||||||||| |||| | | ||| |
Sbjct 548 GGCGTAGGAGGCTGAAAGAGTTGAAACACGATGAGCAAAGTCCACGTCCAAAACATAAT- 606
Query 845 GGAGACAGATAGTGAAACAAACAAAAAAGAGAGTCACCACCAGAAAATTTGGCATGGATG 904
| | | || | |||| |||| |||| |||||||||||||||||||| ||||||
Sbjct 607 -G-G---G--AG-G---CAAATAAAAGAGAGCGTCACCACCAGAAAATTTGGTATGGATA 655
Query 905 TAACAAACTTGCTTGAGAAGAAAAGGGCAGGAGGAGCAG--C---AC---A---A--A-A 950
||||||||||||||||||| ||||||||||||| ||||| | || | | | |
Sbjct 656 TAACAAACTTGCTTGAGAACAAAAGGGCAGGAGCAGCAGCACAAAACAGGATTGAGCACA 715
Query 951 -CAGGATTTCACAGAAAGAGAAGACAACAAGCACTAATCCTGCATTTGTGTT-----AAG 1004
|||| |||||||||||||||| ||||||||||||||||| || | ||||| |||
Sbjct 716 GCAGGTTTTCACAGAAAGAGAACACAACAAGCACTAATCCCACAATCGTGTTAAGACAAG 775
Query 1005 A-CA-A--TATCAGCAACCAGCAACGGT-A----AT--AACCCTTTC------AA----A 1043
| || | | |||||||||| || ||| | | || |||| || |
Sbjct 776 ATCACATCTCTCAGCAACCAAAAAAGGTGACTCTTTCAAAAGATTTCAAGGATAACCTGA 835
Query 1044 A--GAG--AATCAACAGTCACTAAGACCTATTAGCGGATGGGAA-AAAGCAGAGAGTAAA 1098
| ||| ||| ||||| | ||||||||| || ||||| |||| ||| |||||||| ||
Sbjct 836 ACCGAGCAAATGAACAGCCGCTAAGACCTGGTAACGGAT-GGAAGAAAACAGAGAGTGAA 894
Query 1099 TCAAAATTCTCTCCTCATCC-A-A-CACCCAATAATCGAAACAAGCAGAGAAAGGTGCTC 1155
||||| ||||||||||||| | | ||||||||||| ||||||||||||| | | |
Sbjct 895 GCAAAAGTCTCTCCTCATCCAACACCACCCAATAATAGAAACAAGCAGAG--A--T-C-A 948
Query 1156 ACACCAGTATCAACACACTCGAGATCTAATCGATGTGATCTTTTAGAGAAGAAGCAATGC 1215
||||| |||| | | || || | || | ||||||||| |||||||||||||||||
Sbjct 949 ACACC---CTCAA-A-A-TCTAG---TGATTGTTGTGATCTTATAGAGAAGAAGCAATGC 999
Query 1216 AAGAAAATCTATGTAACATCATCAGCTTTCTCTGCCACAGAACGTCCTCGGAAACAGATG 1275
|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 AAGAAAATATCTGTAGCATCATCAGCTTTCTCTGCCACAGAACGTCCTCGGAAACAGATA 1059
Query 1276 AAAAGAGCTCAAGAACCGGAGAGGAAGGCAGATGCGACGATATGCTCTGGTCAGAAGATG 1335
||||||||| |||||| |||| ||||| ||||||||||||||||||||||||| || ||
Sbjct 1060 AAAAGAGCTGAAGAACAGGAGCGGAAGTCAGATGCGACGATATGCTCTGGTCA-AA--TG 1116
Query 1336 TACAAGTACGAGAAGAAGCTTCCTCAAGAACCGTCAAGTTCCAAATTTTACGATTCGAAC 1395
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1117 TACAAATACGAGAAGAAGCTTCCTCAAGAACCGCCAAGTTCCAAATTTTACGATTCGACC 1176
Query 1396 ACCATTTCTCCGACCATAATCAACGCAGGAGAAACCGAAAAAG-ATGTTCCGGGGATGAA 1454
|||||| || ||| || ||||| | |||| ||| |||||| || || |||||| |||
Sbjct 1177 ACCATTACTGTTACCTTAGCCAACGTAAGAGACACC-AAAAAGGATATTTCGGGGACGAA 1235
Query 1455 CAAACTTGAAGAGGAAGAGGAAAGGGTCGTCTCAGAGATTGAGCGGCAAATCGTAGACGC 1514
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1236 GAAACTTGAAGAGGAAGAGGAATGGGTCGTCGCAGAGATTGAGCGGCAAATCGTAGACGC 1295
Query 1515 CCTCGTGCAGGAAACGGTAGAAACTACGTCGCTTTG-GGGTCTAAACGCAAACGCTGTTA 1573
||||||||||||||||| ||||| |||||| ||| ||||||||||||| ||||||||
Sbjct 1296 ACTCGTGCAGGAAACGGTGGAAACGACGTCG-TTTACGGGTCTAAACGCACGCGCTGTTA 1354
Query 1574 GCTTTG 1579
| ||||
Sbjct 1355 GATTTG 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59573143180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5