BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G25433.1

Length=673
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg889612 jgi|Araly1|889612|Al_scaffold_0007_1598                    460    4e-129


> Ahg889612 jgi|Araly1|889612|Al_scaffold_0007_1598
Length=345

 Score =  460 bits (249),  Expect = 4e-129
 Identities = 315/345 (91%), Gaps = 12/345 (3%)
 Strand=Plus/Plus

Query  76   ATGATAAGAGTTACGGTGTCGCGGTCAAACACAGTTGCGTCTTACTGTCTGGTGGCACTG  135
            ||||| ||||||||||||||  ||||| ||||||||||||||||||| ||||||||||||
Sbjct  1    ATGATGAGAGTTACGGTGTCTAGGTCACACACAGTTGCGTCTTACTGCCTGGTGGCACTG  60

Query  136  CTGATCCTAACACTTGCGGGATCGGTTAAAAACAGCAACGGAGGAGGTAGC-G-GAGAAT  193
            |||||||||||||| ||||||||||||||||||||| ||||||| ||| || | ||||||
Sbjct  61   CTGATCCTAACACTGGCGGGATCGGTTAAAAACAGCCACGGAGGTGGTCGCAGAGAGAAT  120

Query  194  ATT-----A---TC--GAGGAAGAAACTGTGAGGTTTGGAGAGGGAAGCAAATGATGGAG  243
             ||     |    |  ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  121  TTTAGAGCAGCGGCGAGAGGAAGAAACTGTGAGATTTGGAGAGGGAAGCAAATGATGGAG  180

Query  244  AGGCCATGTGAGGAGCTATACGTAGTAGGTGAAGGAGACACGCTTCACAGCATCAGCGAA  303
            ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  181  AGGCCATGTGAGGAGTTATACGTAGTAGGGGAAGGAGATACGCTTCACAGCATCAGCGAA  240

Query  304  AAATGCGGCGACCCGTTTATCGTGGAGCGTAACCCGCATATCCATGACCCGGATGATGTC  363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AAATGCGGCGACCCGTTTATCGTGGAGCGTAACCCGCATATCCATGACCCGGATGATGTC  300

Query  364  TTCCCTGGTCTCCTCATCAAACTTCACATTAACCTCCCTGAATAA  408
            ||||| ||||||||||||||| ||||||||||||||||| |||||
Sbjct  301  TTCCCGGGTCTCCTCATCAAAATTCACATTAACCTCCCTCAATAA  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24703650216


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5