BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25440.1
Length=1799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329122 jgi|Araly1|329122|fgenesh1_pm.C_scaffold_7001349 1810 0.0
Ahg495266 jgi|Araly1|495266|fgenesh2_kg.8__1082__AT5G51980.1 1197 0.0
Ahg931184 jgi|Araly1|931184|scaffold_303641.1 169 8e-41
> Ahg329122 jgi|Araly1|329122|fgenesh1_pm.C_scaffold_7001349
Length=2004
Score = 1810 bits (980), Expect = 0.0
Identities = 1093/1148 (95%), Gaps = 6/1148 (1%)
Strand=Plus/Plus
Query 127 ATGGATTTAGATATGAACGGAGGAAACAAGAGAGTCTTTCAAAGACTGGGCGGTGGCTCT 186
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGATTTAGATATGAACGGAGGAAACAAGAGAGTCTTTCAAAGACTAAGCGGTGGCTCG 60
Query 187 AATCGGCCGACGACGGACTCAAATCAGAAGGTTTGTTTCCACTGGCGAGCTGGCCGGTGC 246
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATCGGCCGACGACGGACTCGAATCAGAAGGTTTGTTTCCACTGGCGAGCTGGCCGGTGC 120
Query 247 AATCGTTACCCATGCCCTTACCTGCATAGAGAATTGCCGGGTCCGGGTTCGGGTCCAGTA 306
||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 121 AATCGTTACCCTTGCCCTTACCTGCATAGAGAATTGCCGGGTCCGGCTCCGGGTCC--T- 177
Query 307 GCAGCTTCTTCAAATAAAAGGGTCGCTGATGAATCTGGGTTTGCGGGTCCGAGTCACCGG 366
| | ||| | |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 178 TC-G--TCTACGAATAAAAGGGTCGCTGATGAATCTGGTTTTGCGGGCCCGAGTCACCGG 234
Query 367 AGAGGGCCTGGGTTCAGCGGGACTGCTAATAACTGGGGAAGATTTGGTGGGAACAGAACG 426
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 235 AGAGGGCCAGGATTCAGCGGGACTGCTAATAACTGGGGAAGATTCGGTGGGAACAGAACG 294
Query 427 GTGACCAAGACGGAGAAACTTTGCAAATTCTGGGTTGATGGAAATTGCCCTTATGGTGAT 486
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 295 GTGACGAAGACGGAGAAACTTTGCAAATTCTGGGTTGATGGAAATTGCCCTTACGGTGAT 354
Query 487 AAATGTAGATACTTGCATTGCTGGAGCAAAGGAGATAGTTTCTCCTTGTTGACGCAGCTT 546
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 355 AAATGTAGATACTTGCATTGTTGGAGCAACGGAGATAGTTTCTCCTTGTTGACGCAGCTA 414
Query 547 GACGGGCATCAGAAGGTTGTTACTGGGATTGCTCTGCCTTCAGGATCAGATAAGCTTTAC 606
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 415 GACGGACATCAGAAGGTTGTCACTGGGATTGCTCTGCCATCAGGATCAGATAAGCTTTAC 474
Query 607 ACGGCGAGTAAAGATGAAACTGTGCGAATATGGGATTGTGCTTCTGGACAGTGTACAGGT 666
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 475 ACTGCGAGTAAAGATGAAACTGTGCGGATATGGGATTGTGCTTCTGGACAGTGTACAGGT 534
Query 667 GTACTCAATCTTGGTGGGGAAGTTGGCTGCATCATTAGTGAAGGTCCCTGGCTATTGGTT 726
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 535 GTACTCAATCTTGGTGGGGAAGTTGGCTGCATGATTAGTGAAGGCCCCTGGCTATTGGTT 594
Query 727 GGCATGCCAAATCTTGTTAAGGCGTGGAATATCCAAAACAATGCAGACCTGAGCCTCAAT 786
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 595 GGCATGCCAAATCTTGTTAAGGCGTGGAATATCCAAAACAATGTAGACCTGAGTCTCACT 654
Query 787 GGACCTGTTGGCCAAGTATATTCATTGGTTGTGGGTACTGATCTATTGTTCGCTGGCACA 846
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 655 GGACCTGTTGGCCAAGTATATTCATTGGTTGTGGGCACTGATCTACTGTTCGCTGGCACA 714
Query 847 CAAGATGGCTCTATTTTGGTTTGGAGATACAATAGCACCACTAGCTGTTTTGATCCAGCT 906
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 CAAGATGGGTCTATTTTGGTTTGGAAATACAATAGCACCACTAGCTGTTTTGATCCAGCT 774
Query 907 GCATCACTATTGGGTCACACGCTTGCAGTTGTCTCTTTATATGTTGGGGCAAACAGACTC 966
|||||| || |||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 775 GCATCATTAATGGGCCACACCCTTGCAGTTGTTTCTTTATATGTTGGGGCAAACAGACTC 834
Query 967 TATTCTGGTGCCATGGACAATTCTATAAAAGTTTGGAGCCTGGATAATCTGCAGTGTATT 1026
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 835 TATTCTGGTGCCATGGACAATTCTATAAAAGTTTGGTGCCTGGATAATCTGCAGTGTATA 894
Query 1027 CAAACGCTTACAGAGCATACATCAGTTGTTATGTCTCTCATTTGCTGGGATCAGTTTCTT 1086
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 895 CAAACCCTTACAGAGCATACTTCAGTTGTCATGTCTCTCATTTGCTGGGATCAGTTTCTT 954
Query 1087 CTGTCATGTTCATTGGACAATACCGTCAAGATATGGGCTGCTACTGAAGGTGGAAACTTA 1146
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CTGTCATGTTCTTTGGACAATACCGTCAAGATATGGGCTGCTACTGAAGGTGGAAACTTA 1014
Query 1147 GAAGTGACATATACTCACAAAGAAGAATACGGCGTGCTAGCTCTCTGTGGCGTCCATGAT 1206
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1015 GAAGTCACATATACTCACAAAGAAGAATACGGCGTGCTAGCTCTCTGTGGTGTCCATGAT 1074
Query 1207 GCAGAAGCCAAGCCAGTATTGCTATGTTCGTGCAATGACAATTCGTTGCACCTCTATGAT 1266
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1075 GCAGAAGCCAAGCCAGTATTGCTATGTTCGTGCAATGACAATTCATTGCACCTTTATGAT 1134
Query 1267 TTGCCATC 1274
||||||||
Sbjct 1135 TTGCCATC 1142
> Ahg495266 jgi|Araly1|495266|fgenesh2_kg.8__1082__AT5G51980.1
Length=1714
Score = 1197 bits (648), Expect = 0.0
Identities = 1029/1209 (85%), Gaps = 41/1209 (3%)
Strand=Plus/Plus
Query 214 AAGGTTTGTTTCCACTGGCGAGCTGGCCGGTGCAATCGTTAC-CCATGCCCTTACCTGCA 272
||||||||||||||||||||||| || || || ||||||| | || || ||||| || ||
Sbjct 240 AAGGTTTGTTTCCACTGGCGAGCCGGGCGTTGTAATCGTT-CTCCTTGTCCTTATCTACA 298
Query 273 TAGAGAATTGCCGGGTCCGGGTTCGGGTCCA--GT--A-G--CAGCTTCTTCAAATAAAA 325
| ||||||| |||||||| ||| ||||| || || | | | | || | |||| ||||
Sbjct 299 TCGAGAATTACCGGGTCCTGGTCCGGGT-CAGGGTCAAGGTCCGGGTTATACAAACAAAA 357
Query 326 GGGTCGCTGATGAATCTGGGTTTGCGGGTCCGAGTCACCGGAGAGGGCCTGGGTTCAGCG 385
|||||||||| |||||||| ||||||||||||||||| |||||||| |||||||| | ||
Sbjct 358 GGGTCGCTGAAGAATCTGGTTTTGCGGGTCCGAGTCATCGGAGAGGACCTGGGTTTAACG 417
Query 386 GG-ACTGCTAATA--A-CTGGGGAAGATTTGGTGGGAACAGAACGGTGACCAAGACGGAG 441
|| ||| | |||| | ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 418 GGAACT-CGAATAGTAGTTGGGGGAGATTTGGTGGGAACAGAACGGTGACAAAGACTGAG 476
Query 442 AAACTTTGCAAATTCTGGGTTGATGGAAATTGCCCTTATGGTGATAAATGTAGATACTTG 501
||| ||||||| || ||||| ||||| |||||| | || |||||||| ||||| ||||||
Sbjct 477 AAAGTTTGCAACTTTTGGGTAGATGGGAATTGCACGTACGGTGATAAGTGTAGGTACTTG 536
Query 502 CATTGCTGGAGCAAAGGAGATAG-TTTCTCCTTGTTGACGCAGCTTGACGGGCATCAGAA 560
||||| ||||| |||||||| || ||| || |||||||| |||||||| || ||| ||||
Sbjct 537 CATTGTTGGAGTAAAGGAGAGAGCTTT-TCGTTGTTGACTCAGCTTGATGGTCATGAGAA 595
Query 561 GGTTGTTACTGGGATTGCTCTGCCTTCAGGATCAGATAAGCTTTACAC-GGCGAGTAAAG 619
| |||||| ||| |||||| ||||||| || || |||||||||||||| || |||||||
Sbjct 596 GCTTGTTAGTGGTATTGCTTTGCCTTCTGGCTCTGATAAGCTTTACACTGG-AAGTAAAG 654
Query 620 ATGA-AACTGTGCGAATATGGGATTGTGCTTCTGGACAGTGTACAGGTGTACTCAATCTT 678
|||| | || |||| | ||||||||||||||||||||||||||||| ||||| || |||
Sbjct 655 ATGAGACCT-TGCGTGTTTGGGATTGTGCTTCTGGACAGTGTACAGGAGTACTTAAACTT 713
Query 679 GGTGGGGAAGTTGGCTGCAT-CATTAGTGAAGGTCCC-TGGCTATTGGTTGGCATGCCAA 736
||||||||||||||||| | | |||| ||||| ||| ||||||||||||||||||||||
Sbjct 714 GGTGGGGAAGTTGGCTGTGTGC-TTAGCGAAGG-CCCGTGGCTATTGGTTGGCATGCCAA 771
Query 737 ATCTTGTTAAGGCGTGGAATATCCAAAACAATGCAGACCTGAGCCTCAATGGACCTGTTG 796
||||||| |||||||||||||| ||| ||||||||||| ||| || |||||||||||||
Sbjct 772 ATCTTGTCAAGGCGTGGAATATTGAAACCAATGCAGACCAGAGTCTAAATGGACCTGTTG 831
Query 797 GCCAAGTATATTCAT-TGGTTGTGGGTACTGATCTAT-TGTTCGCTGGCACACAAGATGG 854
|||||||||| || | | ||||||||||||||||| | | |||||||| ||||| |||||
Sbjct 832 GCCAAGTATACTC-TCTCGTTGTGGGTACTGATCT-TCTCTTCGCTGGTACACAGGATGG 889
Query 855 CTCTATTTTGGTTTGGAGATACAATAGC-ACCACTAGCTGTTTTGATCCAGCTGCATCAC 913
||||||||||| |||||||| ||| || |||||| |||||| || ||||| |||||||
Sbjct 890 CTCTATTTTGGCATGGAGATATAAT-GCTGCCACTAACTGTTTCGAACCAGCGGCATCAC 948
Query 914 T-ATTGGGTCACACGCTTGCAGTTGTCT-CTTTATATGTTGGGGCAAACAGACTCTATTC 971
| | ||| || || ||||||||||| | | ||||||||||||||||||||||| |||||
Sbjct 949 TGA-CGGGCCATACACTTGCAGTTGT-TACCTTATATGTTGGGGCAAACAGACTTTATTC 1006
Query 972 TGGTGCCATGGACAATTCTATAAAAGTTTGGAGCCTGGATAATCTGCAGTGTATTCAAAC 1031
|||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1007 TGGTTCCATGGACAAAACTATAAAAGTTTGGAGCCTGGATAATCTGCAGTGTATACAAAC 1066
Query 1032 GCTTACAGAGCATACATCAGTTGTTATGTCTCTCATTTGCTGGGATCAGTTTCTTCTGTC 1091
|| || || |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1067 ACTCACGGACCATACATCAGTTGTGATGTCTCTCATTTGCTGGGATCAGTTTCTTTTGTC 1126
Query 1092 ATGTTCATTGGACAATACCGTCAAGATATGGGCTGCTACT-GAAGGTGGAAACTTAGAAG 1150
|||||||||||||| || || |||||||||||||| | | ||||||||||| || ||||
Sbjct 1127 TTGTTCATTGGACAACACGGTTAAGATATGGGCTGC-AGTTGAAGGTGGAAATTTGGAAG 1185
Query 1151 TGACATATACTCACAAAGAAGAATACGGCGTGCTAGCTCTCTGTGGCGTCCATGATGCAG 1210
|||||| ||||||||||||||| | || ||||||||||| ||||| || ||||||||||
Sbjct 1186 CGACATACACTCACAAAGAAGAACATGGAGTGCTAGCTCTATGTGGTGTACATGATGCAG 1245
Query 1211 AAGCCAAGCCAGTATTGCTATGTTCGTGCAATGACAATTCGTTGCACCTCTATGATTTGC 1270
|||||||||| || ||| |||| || |||||||||||| | |||| |||||| || || |
Sbjct 1246 AAGCCAAGCCGGTTTTGTTATGCTCTTGCAATGACAATACCTTGCGCCTCTACGACTTAC 1305
Query 1271 CATCGTTTACGGAAAGGGGCAAAAT-TTTAGCTAAGCAAGAGATTCGGTCAATCCAGATA 1329
|||| |||||||| ||||| ||||| ||| || ||||||||||| ||| | ||||||||
Sbjct 1306 CATCATTTACGGAGAGGGGGAAAATCTTT-GCAAAGCAAGAGATACGGGCGATCCAGATT 1364
Query 1330 GGTCCCGGGGGCATATTTTTCACCGGTGATGGAAGTGGTCAAGTTAAAGTATGGAAGTGG 1389
||||| ||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||
Sbjct 1365 GGTCCTGGGGGCATATTTTTCACGGGTGACGGAACTGGTCAAGTTAAAGTATGGAAATGG 1424
Query 1390 T-CTACTGA 1397
| | |||||
Sbjct 1425 TGC-ACTGA 1432
> Ahg931184 jgi|Araly1|931184|scaffold_303641.1
Length=549
Score = 169 bits (91), Expect = 8e-41
Identities = 195/240 (81%), Gaps = 27/240 (11%)
Strand=Plus/Plus
Query 1180 GTGCTAGCTCTCTGTGGCGTCCATGATGCAGAAGCCAAGCCAGTATTGCTATGTTCGTGC 1239
|||||| ||||||||||||||||||||||||||||||||| |||||| |||||| ||| |
Sbjct 308 GTGCTATCTCTCTGTGGCGTCCATGATGCAGAAGCCAAGCTAGTATTTCTATGTGCGTCC 367
Query 1240 AATGACAATTCGTTGCACC--TCT-A--TG--AT--TT-G---C--------C--ATC-G 1275
||||||||||| ||||||| | | | || || || | | | || |
Sbjct 368 AATGACAATTCATTGCACCTTTATGATTTGCCATCCTTAGATTCTGTTTTTTCTGTTCGG 427
Query 1276 TTTACGGAAAGGGGCAAAATTTTAGCTA-AGCAAGAGATTCGGTCAATCCAGATAGGTCC 1334
||||| |||| ||||||| ||||||| | |||||||||| || | |||||||| |||||
Sbjct 428 TTTACAGAAAAGGGCAAAGTTTTAGC-AGAGCAAGAGATCCGATTGATCCAGATTGGTCC 486
Query 1335 CGGGGGCATATTTTTCACCGGTGATGGAAGTGGTCAAG-TTAAAGTATGGAAGTGGTCTA 1393
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 487 CGGGGGCATATTTTTCACCGGTGATGGAAGTGGTCTCGGTTAAAGTATGGAAGTGGTCTA 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67534004385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5