BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25450.1
Length=2316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492281 jgi|Araly1|492281|fgenesh2_kg.7__1714__AT4G25450.1 2462 0.0
Ahg931184 jgi|Araly1|931184|scaffold_303641.1 233 4e-60
> Ahg492281 jgi|Araly1|492281|fgenesh2_kg.7__1714__AT4G25450.1
Length=2379
Score = 2462 bits (1333), Expect = 0.0
Identities = 1437/1486 (97%), Gaps = 11/1486 (1%)
Strand=Plus/Plus
Query 765 GTTTTTGGAACAATATGTATCCTATTTACTCTATCTCCTCAACTTGCACCTGTACTTGGT 824
|||||||||||||| || || |||||||||||||||||||||||||||||||| ||||||
Sbjct 872 GTTTTTGGAACAATCTGCATTCTATTTACTCTATCTCCTCAACTTGCACCTGTGCTTGGT 931
Query 825 CTATTGATGCTAGCTGTGTCAGT-TCTAGTTGCTGTGTACAAGAGATCGACTGTTCCTGT 883
||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 932 CTATTGATGCTTGCAGTGTCAGTAT-TAGTTGCTGTGTACAAGAGATCGACTGTTCCTGT 990
Query 884 TTATAAATCGCATGGATTAGCTCAAGCAACAATGTCTGATTGTGTATCAGAAACGTTCTC 943
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 TTATAAATCACATGGATTAGCTCAAGCAACAATGTCTGATTGTGTATCAGAAACGTTCTC 1050
Query 944 TGCAATCCGAACTGTAAGATCATTCAGCGGCGAAAAACGTCAGATGTCTATCTTCGGTAG 1003
|||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 1051 TGCAATCCGAACTGTAAGATCATTCAGCGGTGAAAAACGTCAGATGTCTCTCTTTGGTAG 1110
Query 1004 TCAGATTCTTGCTTACAAGCTTAGCGGCTTAAAGCTTGGTACTTTCAAGTCTATAAATGA 1063
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TCAGATTCTTTCTTACAAGCTTAGCGGCTTAAAGCTTGGTACTTTCAAGTCTATAAATGA 1170
Query 1064 ATCTATAACAAGAGTTGCTGTTTATATTTCTCTGTTGGCTCTTTACTGTCTTGGGGGAAG 1123
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1171 ATCTATAACAAGAGTTGCTGTTTATATTTCTCTGTTGGCTCTTTACTGTCTCGGGGGAAG 1230
Query 1124 CAAGGTGAAGACGGGTGAGCTCGCTGTTGGAACAGTTGTTTCGTTCATTGGATACACATT 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 CAAGGTGAAGACGGGTGAGCTCGCTGTTGGAACAGTTGTTTCGTTCATTGGATACACATT 1290
Query 1184 CACTCTAACATTTGCTGTCCAAGGGCTTGTAAACACGTTTGGAGATCTACGTGGGACTTT 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 CACTCTAACATTTGCTGTCCAAGGGCTTGTAAACACGTTTGGAGATCTACGTGGGACTTT 1350
Query 1244 TGCTGCTATTGACAGGATCAATTCCATTTTAAACGCGGTGGACATAGATGAGGCTCTTGC 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 TGCTGCTATTGACAGGATCAATTCCATTTTAAACGCGGTGGACATAGATGAGGCTCTTGC 1410
Query 1304 CTACGGGTTAGAAAGAGATATACATACAAAGAAAGTCCAAGATGAAAACCTTAAATTGTT 1363
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1411 CTACGGGTTAGAAAGAGATATAAATACAAAGAAAATCCAAGATGAAAACCTTAAATTGTT 1470
Query 1364 CTTGTCTGCTGGCCCAAATGTGAATATCCGTCACCTCGATAAGTACTACATGTCAAATCT 1423
||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1471 CTTGTCTTCTGGCCCTAATGTGAATATCCGTCACCTCGATAACTACTACATGTCAAATCT 1530
Query 1424 GAAATCAACTAACAATCTACGTACCCTAACATGGGCTGGAGATGTCTGTCTTGATGATGT 1483
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1531 GAAATCAACTAACAATCTTCGTACCCTAACATGGGCAGGAGATGTCTGTCTTGATGATGT 1590
Query 1484 GCATTTTGCTTATCCTCTACGACCCGACGTGAAAGTTCTTGATGGGCTGAGTTTGACGTT 1543
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1591 GCATTTTGCTTATCCTCTACGACCCGACGTGAAAGTTCTTGATGGGCTGAGTTTAACGTT 1650
Query 1544 GAATTCTGGTACTGTAACTGCTCTTGTTGGCTCTAGTGGTGCGGGAAAAAGTACTATTGT 1603
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 GAATTCTGGTACCGTAACTGCTCTTGTTGGCTCTAGTGGTGCGGGAAAAAGTACTATTGT 1710
Query 1604 ACAGTTATTGGCACGCTTCTATGAGCCAACACAAGGACGTATTACTGTGGGTGGAGAAGA 1663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 ACAGTTATTGGCACGCTTCTATGAGCCAACACAAGGACGTATTACTGTGGGTGGAGAAGA 1770
Query 1664 TGTGAGGATGTTTGACAAGAGTGAATGGGCTAAGGTTGTCTCAATTGTGAATCAGGAACC 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 TGTGAGGATGTTTGACAAGAGTGAATGGGCTAAGGTTGTCTCAATTGTGAATCAGGAACC 1830
Query 1724 GGTTCTCTTTTCTCTCTCCGTGGCCGAGAATATTGCATATGGTCTCCCCAATGAGCATGT 1783
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 TGTTCTCTTTTCTCTCTCCGTGGCCGAGAATATTGCATATGGTCTCCCCAATGAGCATGT 1890
Query 1784 GTCCAAGGACGACATCATTAAGGCAGCCAAAGCTGCCAACGCTCATGATTTTATAATCTC 1843
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1891 GTCCAAGGACGACATCATTAAGGCAGCCAAAGCTGCCAACGCTCATGATTTCATAATCTC 1950
Query 1844 ACTTCCTCAGGGATACGATACACTGGTTGGTGAAAGAGGAGGCTTGCTTAGCGGAGGACA 1903
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1951 ACTTCCTCAGGGCTACGATACACTGGTTGGTGAAAGAGGAGGGTTGCTTAGCGGAGGACA 2010
Query 1904 -ACGACAGAGAGTTGCCATAGCCCGATCTCTGCTGAAGAATGCCCCCATCTTGATTCTCG 1962
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2011 GA-GACAGAGAGTTGCCATAGCCCGATCTCTGCTGAAGAATGCCCCCATCTTGATTCTCG 2069
Query 1963 ATGAGGCCACAAGTGCGCTGGATGCAGTGAGCGAGCGGTTAGTCCAGAGTGCGTTGAACC 2022
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 2070 ATGAGGCCACAAGTGCGCTTGATGCAGTGAGCGAGCGGTTGGTCCAGAGTGCGTTGAACC 2129
Query 2023 GTCTGATGAAAGACAGGACAACATTAGTCATCGCTCACAGACTGAGCACAGTTCAGAGCG 2082
||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 2130 GTCTGATGAAAGACAGGACAACATTAGTCATCGCTCACAGATTGAGTACAGTACAGAGCG 2189
Query 2083 CGAATCAGATCGCTGTGTGCTCTGATGGGAAGATCATAGAGCTTGGAACACATTCCGAAT 2142
|||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 2190 CGAATCAGATAGCTGTATGCTCTGATGGGAGGATCATAGAGCTTGGAACACATTCAGAAT 2249
Query 2143 TGGTAGCGCAAAAGGGATCATATGCTTCACTTGTTGGCACTCAGAGACTAGCCTTTGAGT 2202
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2250 TGGTGGCGCAAAAGGGATCATATGCTTCACTTGTTGGCACTCAGAGGCTAGCCTTTGAGT 2309
Query 2203 AATTTACCTTAACTCGGTGTAATTTGTAACAAATTACTACAAAATT 2248
||||||| | | |||||||| |||||||||| |||| ||||||
Sbjct 2310 AATTTAC-T---C--GGTGTAATCTGTAACAAATGACTA-AAAATT 2348
Score = 1110 bits (601), Expect = 0.0
Identities = 711/763 (93%), Gaps = 11/763 (1%)
Strand=Plus/Plus
Query 9 TTCCAAAATTAGCCA-TTTTATACAGTGGTTAAGCTCGTTGG---ACCAATATCAATGGC 64
||||||||||||||| |||||| ||| || ||||||||||| ||||| |||||||||
Sbjct 1 TTCCAAAATTAGCCATTTTTATGCAGCCGTGAAGCTCGTTGGACCACCAAGATCAATGGC 60
Query 65 GTCTGCAACGACTCTTCTCTTCCACCACGGTTCCACTCGAGTCCTCGTCGCTCGTAGACG 124
||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GTCTGCAACCACTCTTTTGTTCCACCACGGTTCCACTCGAGTCCTCGTAGCTCGTAGACG 120
Query 125 GTGCCAAGCTTCAGTCCTTAGACCCTACGGCGGTTTAAAGCCCTTTCTTTCCTTCTGCAG 184
||| ||||| || ||||||| | ||| ||||| |||||||||| |||||||| ||||
Sbjct 121 GTGTCAAGCCTCTGTCCTTA-AACCT--GGCGGACTAAAGCCCTTGATTTCCTTCCGCAG 177
Query 185 CTTACCTAACTCCACTGCGCCGTTCCGGGATTCGTTGAGAGC-AAAATCCGATGGATTGG 243
|||||||| |||||||||||||| |||| ||||||||| || ||||||||||| ||||
Sbjct 178 CTTACCTAGCTCCACTGCGCCGTCCCGGCCTTCGTTGAG-GCTGAAATCCGATGGCTTGG 236
Query 244 CTCGGGCCTATGTTACCGGAGCGCCGCCTATCGTGGAAGAACCAGACCCAAAGATTGAAG 303
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 237 CTCGGGCCTATGTTACTGGAGCGCCGCCTATCGTGGACGAACCAGACCCAAAGATTGAAG 296
Query 304 AATCCAAATCTGAGGCTGAATCGAAGGATTTAAT-TAGTTGGGGGCTTCTGTGGAGCTTG 362
|||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 297 AATCCAAATCTGAGGCTGAATCGAAGGATTTAATCT-GTTGGGGGCTTGTGTGGAGCTTG 355
Query 363 ATGAGCAAGCACAAGCTCAGGCTCAGTGTTTGCTTATTGACTCTCCTTGGATGCAGTACT 422
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 356 ATGAGCAAGCACAAGCTCAGGCTTAGTGTTTGCTTATTGACTCTCCTTGGCTGCAGTACT 415
Query 423 TGCACTCTCTCTATGCCTGTTTTTTCTGGTAGATTCTTTGAAGTACTGATTGGGGTGAGA 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 416 TGCACTCTCTCTATGCCTGTTTTTTCTGGTAGATTCTTTGAAGTGCTGATTGGGGTGAGA 475
Query 483 CCGGAGCCTTTGTGGCGGCTGCTGAGCAAAATTGCTGTTTTGTACTCGTTGGAACCCATC 542
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CCAGAGCCTCTGTGGCGGCTGCTGAGCAAAATTGCTGTTTTGTACTCGTTGGAACCCATT 535
Query 543 TTTACTATTGCTTTTGTGACCAACATGACTGCTATCTGGGAAAACGTTATGGCAATATTA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 536 TTTACTATTGCTTTTGTGACCAACATGACTGCTATCTGGGAAAACGTTATGGCAACATTA 595
Query 603 AGAGCTCAGATTTTCAGAAGGGTTTTGATCCAGAAGGCAGAGTTCTTCGACAAATACAAG 662
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 596 AGAGCTCAGATTTTCAGAAGGGTTTTGATCCAGAAGGCAGAGTTTTTCGACAAATATAAG 655
Query 663 GTTGGAGAGCTAACGGGGCTACTCACGTCTGATCTTGGTGCTCTGAATAGCATTGTGAAT 722
|| |||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 656 GTAGGAGAGCTGACGGGGCTGCTCACGTCTGACCTTGGTGCTCTGAATAGCATCGTGAAT 715
Query 723 GATAACATCTCACGAGATCGTGGATTTAGGGCATTTACAGAGG 765
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GATAACATCTCACGAGATCGTGGATTTAGGGCATTTACAGAGG 758
> Ahg931184 jgi|Araly1|931184|scaffold_303641.1
Length=549
Score = 233 bits (126), Expect = 4e-60
Identities = 178/202 (88%), Gaps = 8/202 (4%)
Strand=Plus/Plus
Query 766 TTTTTGGAACAATATGTATCCTATTTACTCTATCTCC-TCAACTTGCACCTGTACTTGGT 824
||||||||||||| || || || ||||||||||| || ||||||||||||||| ||||||
Sbjct 79 TTTTTGGAACAATCTGCATTCTTTTTACTCTATC-CCGTCAACTTGCACCTGTGCTTGGT 137
Query 825 CTATTGATGCTAGCTGTGTCAGT-TCTAGTT-GCT--GTGTACAAGAGATCGACTGTTCC 880
||||||||||||||||||||||| | ||||| | | | || | | |||| || |||||
Sbjct 138 CTATTGATGCTAGCTGTGTCAGTGT-TAGTTGGTTAACTCTATATG-GATCAACAGTTCC 195
Query 881 TGTTTATAAATCGCATGGATTAGCTCAAGCAACAATGTCTGATTGTGTATCAGAAACGTT 940
|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 196 TGTTTATAAAGCACATGGATTAGCTCAAGCAACAATGTCAGATTGTGTATCAGAAACGTT 255
Query 941 CTCTGCAATCCGAACTGTAAGA 962
||||||||||||||||| ||||
Sbjct 256 CTCTGCAATCCGAACTGGAAGA 277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87226661050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5