BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25515.1
Length=2394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354233 jgi|Araly1|354233|fgenesh1_pg.C_scaffold_7001406 2660 0.0
Ahg492274 jgi|Araly1|492274|fgenesh2_kg.7__1707__AT4G25520.1 2122 0.0
> Ahg354233 jgi|Araly1|354233|fgenesh1_pg.C_scaffold_7001406
Length=1992
Score = 2660 bits (1440), Expect = 0.0
Identities = 1870/2065 (91%), Gaps = 80/2065 (4%)
Strand=Plus/Plus
Query 1 ATGCAGAGGAGCAGTGGCATC---AATAATCTGCATATCCCGACTTCGCCAATGTCTTTC 57
|||||||||||||||| |||| |||||| ||| |||||| || || || ||||||||
Sbjct 1 ATGCAGAGGAGCAGTGCCATCAATAATAATATGCGTATCCCAACATCACCTGTGTCTTTC 60
Query 58 TCTTCGAATGGCATTAACCTGCCTGGATCAATGGTTCTTGATGGATCTCCTTCAATGCAA 117
|| ||| | |||||||| | ||||| ||| ||||||||||||| ||| |||||||||||
Sbjct 61 TCCCCGAGTAGCATTAACATACCTGGTTCATTGGTTCTTGATGGCTCTGCTTCAATGCAA 120
Query 118 CACTTACCTCAGCAGCAGCAGCGGCAACTACTAGAACAGCAAGCAGGACAAGGTTCAGTT 177
||||||||| |||||||| | | || |||| ||| | | |||
Sbjct 121 CACTTACCT---CAGCAGCA---G------C-AG--CAGC-AGC----C-----T--GTT 153
Query 178 CCAATGAGGGAAAACAGTTATTCCCATGTAGATAAGAAACTGAGATTAGAAGTGAAGCAA 237
|||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||
Sbjct 154 CCAATGAGGGAAAACAATTATTCCCATGTGGATAAGAAACCCAGATTAGAAGTGAAGCAC 213
Query 238 GAAGACTTGTTGCAGCAGCAGATTTTACAGCAGTTGATCCAGCGCCAGGACCCCACGGGA 297
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 214 GAAGACTTGTTGCAGCAGCAGATTTTACAGCAGTTGATCCACCGTCAGGACCCCACGGGA 273
Query 298 AGAAATCCGCAGATGCAAGCTTTGCTTCAGCAGCAGAGAGTGAGGCAACATCAGCAGATG 357
|| ||||||||| |||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 274 AGGAATCCGCAGTTGCAAGCTTTGCTTCAGCAGCAGAGACTCAGGCAACACCAGCAGATG 333
Query 358 CTTCAATCCATGTCACCCTCTCAGAGACTCCAACTTCAGAAACAGCAGCAGCTGAGACAG 417
|||||||||||||||||||| ||||| |||||||||||| | ||||||||| ||||||||
Sbjct 334 CTTCAATCCATGTCACCCTCCCAGAGGCTCCAACTTCAGCACCAGCAGCAGTTGAGACAG 393
Query 418 CAGTTACAGCAACAAGGAACCCAACAGATTTCTCCTAATGTACGTCCTTATGAAGTTGGC 477
|| |||||| | || ||||||||||||||||| | | | |||||||
Sbjct 394 CAATTACAG---C----AA--CAACAGATTTCTCCTAA--T--G------T--AGTTGGC 432
Query 478 GTCTGTGCTCGGAAATTGATGATGTACTTGTATCATCTGCAGCAACGGCCTGCTGAAAAT 537
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GTCTGTGCTCGCAAATTGATGATGTACTTGTATCATCTGCAGCAACGGCCTGCTGAAAAT 492
Query 538 TGCATTACTTATTGGAGGAAATTTGTGGCAGAATACTTCTCACCTCGTGCAAAGCAGAGG 597
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 493 TGCATTACCTATTGGAGGAAATTTGTGGCAGAATACTTCTCACCTCGTGCAAAGCAAAGG 552
Query 598 TTGTGCTTGTCACAGTACGAAAGTGTTGGGCACCATGCCCTTGGCATGTTTCCACAGGCA 657
||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||
Sbjct 553 TTGTGCTTGTCACAGTACGAAAGTGCTGGGCACCATGCGCTTGGCATGTTTCGACAGGCA 612
Query 658 GCTCCGGATATGTGGCAGTGTGATCTTTGCGGCACTAAGTCTGGAAAGGGATTTGAGGCT 717
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 613 GCTCCGGATATGTGGCAGTGTGATCTTTGCGGCACCAAGTCTGGAAAAGGATTTGAAGCA 672
Query 718 ACTTTTGATGTGCTAGCCAGACTTATTGAAATAAAATTTGCAAGTGGCATCATTGATGAG 777
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 673 ACTTTCGATGTGCTTGCCAGACTTATTGAAATCAAATTTGCAAGTGGCATCATTGATGAG 732
Query 778 CTCTTATATCTTGACCACCCACGAGAAAACAGATTTCCCAATGGACTGATGATGCTAGAA 837
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 733 CTCTTATATCTGGACCACCCACGAGAAAACAGATTTCCCAATGGACTGATGATGTTAGAA 792
Query 838 TATAGAAAAGCAGTTCAGGAAACTGTACACGAGCAGTTTCGTGTTGTTCGTGAGGGCCAT 897
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 793 TATAGAAAAGCAGTTCAGGAAACTGTACACGAGCAGTTTCGTGTTGTCCGTGAGGGCCAT 852
Query 898 CTTCGTATCATATTCTCTCCAGATCTGAAGATACTGTCTTGGGAGTTTTGTGCTCGGCGT 957
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 853 CTTCGCATCATATTCTCTCAAGATCTGAAGATACTGTCTTGGGAGTTTTGTGCTCGGCGT 912
Query 958 CATGAAGAGCTTCTTCTTCGCAGGCTTATTGCTCCGCAGGTGAACCAGTTGCTTCAGGTT 1017
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 913 CATGAAGAGCTTCTTCTTCGCAGACTTATTGCTCCTCAGGTGAACCAGTTGCTTCAGGTT 972
Query 1018 GCTCAGAAATGCCAGAGCACGATTTCTGAGAGTGGTTCACAGGGAGTTTCTCAGCAGGAT 1077
|| ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 973 GCACAGAAATGCCAGAGCACAATTTCAGAGAGTGGTTCAGAGGGAGTTTCTCAGCAGGAT 1032
Query 1078 ATACAGTCAAACAGTAACATGGTCTTGGGAGCAGGGAGG-CAGCTGGCAAAGTTCATGGA 1136
| |||||||||||||| ||||||||||||||||| | | |||||||| |||||||||||
Sbjct 1033 TTGCAGTCAAACAGTAATATGGTCTTGGGAGCAGG-ACGACAGCTGGCGAAGTTCATGGA 1091
Query 1137 ATTACAGTCGCTCAATGATCTTGGCTATCCAAAAAGATATATCAGAACTCTACAGATATC 1196
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 ATTACAGTCACTGAATGATCTTGGCTATCCAAAAAGATATATCAGAACTCTACAGATATC 1151
Query 1197 TGAAGTAGTCAAGAGCATGAAGGATCTGATGAATTTCACTGGCGAGCACAAAGTCGGCCC 1256
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1152 TGAAGTTGTCAAGAGCATGAAGGATCTGATGAATTTCACTGGCGAGCACAAAATCGGCCC 1211
Query 1257 TCTCGAGGGGTTAAAACAGCTTCTGGAACAGACGGCGACAGTGAAGCTTCAGAGACAGAA 1316
| ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1212 TATCGAGGGTTTAAAACAGCTTCTGGAACAGACAGCGACAGTGAAGCTCCAGAGACAGAA 1271
Query 1317 AATGCAAGAGATGGAGCAGTTTGGGAATAGTGGAGCAATGAGTGGGCCAGCTCAAGCTCA 1376
||||||||||||||||||||||||| | | ||||||||||||
Sbjct 1272 AATGCAAGAGATGGAGCAGTTTGGG----------C----------C-AGCTCAAGCTCA 1310
Query 1377 AATGACTTTATCTTCAGGAACGATGAGCGGTTCAACTGCCAACAACAACTCCAATAATCA 1436
|||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 AATGGCGTTATCTTCAGGTACGATGAGCGGTTCAACTGCCAACAACAACTCCAATAATCA 1370
Query 1437 CCATCAAATTGTTGGTCGTGGAGCTATGAATGGGTCACCTCAAGCCACAGCAGCTCTGAC 1496
||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||
Sbjct 1371 CCATCAAATTGTTGGTCGTGGAGCTATGAATGGCTCAGCTCAAGCCGCAGCAGCTTTGAC 1430
Query 1497 CAACTACCAAAGCATGCTTATAAGGCAAAATGCTATGAATAACCAAAACTCAAATACGGG 1556
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1431 CAACTACCAAAGCATGCTTATGAGGCAAAATGCTATGAATAACCCAAACTCAAATACGGG 1490
Query 1557 CAACCAAGAGGGGTTCTCGAGTCAGAACCCAACGCTGAACTCAAACCAGAGTCCATCTTC 1616
|| ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 1491 TAAACAAGAGGGGTTCTCGAGTCAGAATCCAACCCCGAACTCAAACCAGAGTCCATCTTC 1550
Query 1617 TTCATC-GCAGCAGAGGGAGAACTTAGCTACAAGTGGATTTCCCAGCTCTCCTCAAATGC 1675
||| || | | |||||| |||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1551 TTCGTCAG-ATCAGAGGCAGAACTTAGCTACAGGTGGATTTCCCAGTTCTCCTCAAATGC 1609
Query 1676 AACAGCAGCAGCACATCC-TGAATGGCACTCCCAACATGCTTCCGCAGAATCATCCTCAT 1734
||||||||| || || || || ||||| |||||| ||||||||||||||||||||||| |
Sbjct 1610 AACAGCAGCGGCGCA-CCATGGATGGCGCTCCCAGCATGCTTCCGCAGAATCATCCTCGT 1668
Query 1735 CAGTTGCAATC-GCCACATTCACATGGTAACACTCAGGAGCAGCAGATGCTTCATCAGCT 1793
||||||||||| || ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1669 CAGTTGCAATCAGC-ACAGTCACATGGTAACACTCGGGAGCAGCAGATGCTTCATCAGCT 1727
Query 1794 GTTGCAGGAGATGACTGAAAATGGAGCGAGTGTGGAACAGCAACAGGCCTTTCCGGGTCA 1853
||||||||||||| |||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 1728 GTTGCAGGAGATGTCTGAAAATGGAGCGAGTGTGCAACAGCAACAAGCCTTTTTGGGTCA 1787
Query 1854 AAGTGGTAGCAATAATAACACCGAGAGAAACACAACTGCCTCTACTTCCAATATCTCAGG 1913
|||||||||||| | |||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 1788 AAGTGGTAGCAACAGTAACGCAGAGAGAAACACAACTGCCTCTACTTCCAACATCTCAGG 1847
Query 1914 AGGAGGCCGAGTTCCAAGCCGCATCAATAGTTTTAAAGCATCTTCAAACAACAACCTTCC 1973
||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 1848 AGGAGGCCGAGTTCCAAGCCGCAACAATAGTTTTAAAGCAGCCTCAAACAACAACCTTCC 1907
Query 1974 TTTTTCAGAAGATATATCGGTTACGGACCATGATTTCTCAGAAGATGGCTTCTTCAACAA 2033
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1908 TTTTTCAGAAGATATATCGGTTTCGGACCATGATTTCTCAGAAGATGGCTTCTTCAACAT 1967
Query 2034 CAGTGATATCTATGGTGGCTTGTAA 2058
|||||||||||||||||||||||||
Sbjct 1968 CAGTGATATCTATGGTGGCTTGTAA 1992
> Ahg492274 jgi|Araly1|492274|fgenesh2_kg.7__1707__AT4G25520.1
Length=2673
Score = 2122 bits (1149), Expect = 0.0
Identities = 1380/1491 (93%), Gaps = 17/1491 (1%)
Strand=Plus/Plus
Query 1 ATGCAGAGGAGCAGTGGCATC---AATAATCTGCATATCCCGACTTCGCCAATGTCTTTC 57
||||||||||||||||||||| |||||| ||| |||||| || || ||||||||||||
Sbjct 260 ATGCAGAGGAGCAGTGGCATCAATAATAATATGCGTATCCCAACATCACCAATGTCTTTC 319
Query 58 TCTTCGAATGGCATTAACCTGCCTGGATCAATGGTTCTTGATGGATCTCCTTCAATGCAA 117
|| |||||| || |||| ||||||| ||| | ||||||||||| ||| |||||||||||
Sbjct 320 TCCTCGAATAGCGGTAACATGCCTGGTTCATTAGTTCTTGATGGCTCTGCTTCAATGCAA 379
Query 118 CACTTACCTCAGCAGCAGCAGC-G--GCAACTACTAGAACAGCAAGCAGGACAAGGTTCA 174
|||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||
Sbjct 380 CACTTACCTCAGCAGCAGCAGCAGCAGCAACTACTACAACAGCAAGCAGGACAAGGTTCA 439
Query 175 GTTCCAATGAGGGAAAACAGTTATTCCCATGTAGATAAGAAACTGAGATTAGAAGTGAAG 234
|||||||||||||| |||| |||||||||||| |||||||||| |||||||||||||||
Sbjct 440 GTTCCAATGAGGGAGAACAATTATTCCCATGTGGATAAGAAACCCAGATTAGAAGTGAAG 499
Query 235 CAAGAAGACT-TGTTGCAGCAGCAGATTTTACAGCAGTTGATCCAGCGCCAGGACCCCAC 293
||||| || | |||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 500 CAAGAGGA-TATGTTGCAGCAGCAGATTTTACAGCAGTTGATCCACCGTCAGGACCCCAC 558
Query 294 GGGAAGAAATCCGCAGA-TGCAAGCTTTGCTTCAGCAGCAGAGAGTGAGGCAACATCAGC 352
||| || ||||| || | | |||||||||||||||||||||||| | |||||||||||||
Sbjct 559 GGGGAGGAATCCTCA-ATTCCAAGCTTTGCTTCAGCAGCAGAGACTCAGGCAACATCAGC 617
Query 353 AGATGCTTCAATCCATGTCACCCTCTCAGAGACTCCAACTTCAGAAACAGCAGCAGCTGA 412
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 618 AGATGCTTCAATCCATGTCACCCTCTCAGAGACTCCAACTTCAGCAGCAGCAGCAGTTGA 677
Query 413 GACAGCAGTTACAGCAACAAGGAACCCAACAGATTTCTCCTAATGTACGTCCTTATGAAG 472
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 678 GACAGCAATTACAGCAACAAGGAACCCAACAGATTCCTCCTAATGTACGTCCTTATGAAG 737
Query 473 TTGGCGTCTGTGCTCGGAAATTGATGATGTACTTGTATCATCTGCAGCAACGGCCTGCTG 532
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TTGGCGTGTGTGCTCGGAAATTGATGATGTACTTGTATCATCTGCAGCAACGGCCTGCTG 797
Query 533 AAAATTGCATTACTTATTGGAGGAAATTTGTGGCAGAATACTTCTCACCTCGTGCAAAGC 592
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 AAAATTGCATTACCTATTGGAGGAAATTTGTGGCAGAATACTTCTCACCTCGTGCAAAGC 857
Query 593 AGAGGTTGTGCTTGTCACAGTACGAAAGTGTTGGGCACCATGCCCTTGGCATGTTTCCAC 652
| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 858 AAAGGTTGTGCTTGTCACAGTACGAAAGTGCTGGGCACCATGCACTTGGCATGTTTCCAC 917
Query 653 AGGCAGCTCCGGATATGTGGCAGTGTGATCTTTGCGGCACTAAGTCTGGAAAGGGATTTG 712
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 918 AGGCAGCTCCGGATATGTGGCAGTGTGATCTTTGCGGCACCAAGTCTGGAAAGGGATTTG 977
Query 713 AGGCTACTTTTGATGTGCTAGCCAGACTTATTGAAATAAAATTTGCAAGTGGCATCATTG 772
|||| || ||||||||||| ||||||||||||||||| |||||||||||||| || ||||
Sbjct 978 AGGCAACGTTTGATGTGCTTGCCAGACTTATTGAAATCAAATTTGCAAGTGGTATTATTG 1037
Query 773 ATGAGCTCTTATATCTTGACCACCCACGAGAAAACAGATTTCCCAATGGACTGATGATGC 832
|||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 1038 ATGAGCTCTTATATCTGGATCACCCTCGAGAAAACAGATTTCCCAATGGACTGATGATGT 1097
Query 833 TAGAATATAGAAAAGCAGTTCAGGAAACTGTACACGAGCAGTTTCGTGTTGTTCGTGAGG 892
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 1098 TAGAATATAGAAAAGCAGTTCAGGAAACTGTACACGAGCAGTTCCGTGTTGTCCGTGAAG 1157
Query 893 GCCATCTTCGTATCATATTCTCTCCAGATCTGAAGATACTGTCTTGGGAGTTTTGTGCTC 952
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1158 GCCATCTTCGTATCATATTCTCTCAAGATCTGAAGATACTGTCTTGGGAGTTTTGTGCTC 1217
Query 953 GGCGTCATGAAGAGCTTCTTCTTCGCAGGCTTATTGCTCCGCAGGTGAACCAGTTGCTTC 1012
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1218 GGCGTCATGAAGAGCTTCTTCTTCGCAGACTTATTGCTCCGCAGGTGAACCAGTTACTTC 1277
Query 1013 AGGTTGCTCAGAAATGCCAGAGCACGATTTCTGAGAGTGGTTCACAGGGAGTTTCTCAGC 1072
||||||| ||||||||||||||||||||||| || ||||| ||| |||||||||||||||
Sbjct 1278 AGGTTGCACAGAAATGCCAGAGCACGATTTCAGACAGTGGGTCAGAGGGAGTTTCTCAGC 1337
Query 1073 AGGATATACAGTCAAACAGTAACATGGTCTTGGGAGCAGGGA-GGCAGCTGGCAAAGTTC 1131
||||| ||||||||||||||||||||||||||||||| || | |||| ||||||||||||
Sbjct 1338 AGGATTTACAGTCAAACAGTAACATGGTCTTGGGAGCTGG-ACGGCAACTGGCAAAGTTC 1396
Query 1132 ATGGAATTACAGTCGCTCAATGATCTTGGCTATCCAAAAAGATATATCAGAACTCTACAG 1191
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 ATGGAATTACAGTCGCTGAATGATCTTGGCTATCCAAAAAGATATATCAGAACTCTACAG 1456
Query 1192 ATATCTGAAGTAGTCAAGAGCATGAAGGATCTGATGAATTTCACTGGCGAGCACAAAGTC 1251
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1457 ATATCTGAAGTTGTCAAGAGCATGAAGGATCTGATGAATTTCACTGGCGAGCACAAAATC 1516
Query 1252 GGCCCTCTCGAGGGGTTAAAACAGCTTCTGGAACAGACGGCGACAGTGAAGCTTCAGAGA 1311
|| ||| | || ||||| |||| |||| |||||||||||| |||||||||| | ||||||
Sbjct 1517 GGTCCTATTGAAGGGTTGAAACGGCTTTTGGAACAGACGGTGACAGTGAAGATCCAGAGA 1576
Query 1312 CAGAAAATGCAAGAGATGGAGCAGTTTGGGAATAGTGGAGCAATGAGTGGGCCAGCTCAA 1371
||||||||||||||||||||||||||||||||||| | | | |||| |||||||||||||
Sbjct 1577 CAGAAAATGCAAGAGATGGAGCAGTTTGGGAATAGCGAATCTATGAATGGGCCAGCTCAA 1636
Query 1372 GCTCAAATGACTTTATCTTCAGGAAC-GATGAGCGGTTCAACTGCCAACAACAACTCCAA 1430
||||||||| ||||| |||||||||| | ||| || ||||||| ||||||| | | ||
Sbjct 1637 GCTCAAATGGCTTTAACTTCAGGAACAG-TGAATGGCTCAACTGGCAACAACG-C-C-AA 1692
Query 1431 TAATCACCATCAAATTGTTGGTCGTGGAGCTATGAATGGGTCACCTCAAGC 1481
|||| |||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 1693 TAATAACCATCAAATTGTTGGTCGTGGAGCTATGAGTGGGCCAGCTCAAGC 1743
Score = 1114 bits (603), Expect = 0.0
Identities = 734/798 (92%), Gaps = 6/798 (1%)
Strand=Plus/Plus
Query 1346 GTGGAGCAATGAGTGGGCCAGCTCAAGCTCAAATGACTTTATCTTCAGGAACGATGAGCG 1405
||||||| ||||||||||||||||||||||||||| | ||||||||||| | ||||||||
Sbjct 1716 GTGGAGCTATGAGTGGGCCAGCTCAAGCTCAAATGGCGTTATCTTCAGGTATGATGAGCG 1775
Query 1406 GTTCAACTGCCAACAACAACTCCAATAATCACCATCAAATTGTTGGTCGTGGAGCTATGA 1465
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1776 GTTCAACTGCCAACAACAACTCCAGTAATCACCATCAAATTGTTGGTCGTGGAGCTATGA 1835
Query 1466 ATGGGTCACCTCAAGCCACAGCAGCTCTGACCAACTACCAAAGCATGCTTATAAGGCAAA 1525
|||| ||| |||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1836 ATGGCTCAGCTCAAGCCGCAGCAGCTCTGACCAACTACCAAAGCATGCTTATGAGGCAAA 1895
Query 1526 ATGCTATGAATAACCAAAACTCAAATACGGGCAACCAAGAGGGGTTCTCGAGTCAGAACC 1585
||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1896 ATGCTATGAATAACCCAAACTCAAATACGGGTAAACAAGAGGGGTTCTCGAGTCAGAACC 1955
Query 1586 CAACGCTGAACTCAAACCAGAGTCCATCTTCTTCATCGCAGCAGAGGGAGAACTTAGCTA 1645
|||| | || |||||||||||| ||||||||||||| || |||||| ||||||||| ||
Sbjct 1956 CAACCCCGATTTCAAACCAGAGTACATCTTCTTCATCCCATCAGAGGCAGAACTTAGTTA 2015
Query 1646 CAAGTGGATTTCCCAGCTCTCCTCAAATGCAACAGCAGCAGCACATCC-TGAATGGCACT 1704
|| ||||||||||||||||||||||||||||||||||||||| || || |||||||| ||
Sbjct 2016 CAGGTGGATTTCCCAGCTCTCCTCAAATGCAACAGCAGCAGCGCA-CCATGAATGGCCCT 2074
Query 1705 CCCAACATGCTTCCGCAGAATCATCCTCATCAGTTGCAATCGCCACATTCACATGGTAAC 1764
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2075 CCCAACATACTTCCGCAGAATCATCCTCATCAGTTGCAATCACCACAGTCACATGGTAAC 2134
Query 1765 ACTCAGGAGCAGCAGATGCTTCATCAGCTGTTGCAGGAGATGACTGAAAATGGAGCGAGT 1824
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2135 ACTCCGGAGCAGCAGATGCTTCATCAGCTGTTGCAGGAGATGTCTGAAAATGGAGCGAGT 2194
Query 1825 GTGGAACAGCAACAGGCCTTTCCGGGTCAAAGTGGTAGCAATAATAACACCGAGAGAAAC 1884
||| |||||||||| |||||| ||||||||||||||||||| | |||| | |||||||||
Sbjct 2195 GTGCAACAGCAACAAGCCTTTTCGGGTCAAAGTGGTAGCAACAGTAACGCAGAGAGAAAC 2254
Query 1885 ACAACTGCCTCTACTTCCAATATCTCAGGAGGAGGCCGAGTTCCAAGCCGCATCAATAGT 1944
||||| |||||||||||||| ||||||||||||||||||| ||||||||| | ||| |||
Sbjct 2255 ACAACGGCCTCTACTTCCAACATCTCAGGAGGAGGCCGAGCTCCAAGCCGAAACAACAGT 2314
Query 1945 TTTAAAGCATCTTCAAACAACAACCTTCCTTTTTCAGAAGATATATCGGTTACGGACCAT 2004
||||||||| | |||||||||||||||| ||||||||||||||||||| |||| ||||||
Sbjct 2315 TTTAAAGCAGCCTCAAACAACAACCTTCATTTTTCAGAAGATATATCGATTACAGACCAT 2374
Query 2005 GATTTCTCAGAAGATGGCTTCTTCAACAACAGTGATATCTATGGTGGCTTGTAATATCCA 2064
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2375 GATTTCTCAGAAGATGGCTTCTTCAACAACAGCGATATCTATGGTGGCTTGTAATATCCC 2434
Query 2065 AACA-A-CAGATGCATTGGTACTTTGACT-AACACAGTGAAAGAGAGTGTAGG-CTTATT 2120
||| | |||| |||||| |||||||||| |||||||||||| ||| | |||| ||||||
Sbjct 2435 GACAGAACAGAGGCATTGTTACTTTGACTTAACACAGTGAAAAAGACTTTAGGGCTTATT 2494
Query 2121 GTTCTCATTTAGGTTGGT 2138
|||||||||||| ||||
Sbjct 2495 TTTCTCATTTAGGCTGGT 2512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90197700160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5