BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25520.1
Length=2722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492274 jgi|Araly1|492274|fgenesh2_kg.7__1707__AT4G25520.1 4037 0.0
Ahg354233 jgi|Araly1|354233|fgenesh1_pg.C_scaffold_7001406 1799 0.0
> Ahg492274 jgi|Araly1|492274|fgenesh2_kg.7__1707__AT4G25520.1
Length=2673
Score = 4037 bits (2186), Expect = 0.0
Identities = 2547/2712 (94%), Gaps = 61/2712 (2%)
Strand=Plus/Plus
Query 6 TTTCTGATTTTTGGGATTTGTGCAACTCCCAAGTCGA----TTT--CAGTTTCTGGGTTT 59
||||||||||| ||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 1 TTTCTGATTTTAGGGATTTGTGCAACTCCCAAGTCGATTCCTTTGACACTTTCTGGGTTT 60
Query 60 TGATTTGAGTTCGCCGATTGGATTTGAAGTTTTAGTCTTTG-TT-GATTCTGAAAGGAAG 117
||||||||| | ||||||||||||| ||||||||||| ||| || ||||||| ||| |
Sbjct 61 TGATTTGAGCT-GCCGATTGGATTTAAAGTTTTAGTC-TTGTTTGGATTCTGCGAGG-AC 117
Query 118 GGTTTAAAGTTTCAAGCTTTTCATTCCGCTGAATCAGTCCTTGTATTTGGACGGCTTGAT 177
||||||||||||||||| || || | || ||| |||||||||||||||
Sbjct 118 GGTTTAAAGTTTCAAGC--TT--TT---C---AT---TCC-----TTTGGACGGCTTGAT 159
Query 178 CTGTTATCTGCTCTCGTGGGTGGGGCATGAACAGAACGGTGGTCTCGGGAGCTGTTGAAT 237
||| ||||||||||||| | ||||||||||||||||| |||||| |||||||| ||||
Sbjct 160 CTG-TATCTGCTCTCGT--G-AGGGCATGAACAGAACGGCGGTCTCAGGAGCTGTCGAAT 215
Query 238 CGAGTTTCTCATTGACTGATGCTGTTGGCACGGAAGCTCTAAATATGCAGAGGAGCAGTG 297
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 216 CGAGTTTCTCATTGACTGATGCTCTTGGTACGGAAGCTCTAAATATGCAGAGGAGCAGTG 275
Query 298 GCATCAATAATAATATGCGTATCCCAACATCACCGATGTCTTTCTCCTCGAATAGCGTTA 357
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 276 GCATCAATAATAATATGCGTATCCCAACATCACCAATGTCTTTCTCCTCGAATAGCGGTA 335
Query 358 ACATACCGGGTTCATTGGTTCTTGATGGCTCTGCTGCTTCAATGCAACACTTACCT---c 414
|||| || |||||||| ||||||||||| || ||||||||||||||||||||||| |
Sbjct 336 ACATGCCTGGTTCATTAGTTCTTGATGG--CT-CTGCTTCAATGCAACACTTACCTCAGC 392
Query 415 agcagcagcagcagcaACTACTACAACAGCAAACAGGACAAGGTTCTGTTCCAATGAGGG 474
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 393 AGCAGCAGCAGCAGCAACTACTACAACAGCAAGCAGGACAAGGTTCAGTTCCAATGAGGG 452
Query 475 AGAACAATTATTCCCATGTGGATAAGAAACCCAGATTAGAAGTGAAGCAAGAAGATATGT 534
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 453 AGAACAATTATTCCCATGTGGATAAGAAACCCAGATTAGAAGTGAAGCAAGAGGATATGT 512
Query 535 TGCAGCAGCAGATTTTACAGCAGTTGATCCAGCGTCAGGACCCCACGGGGAGGAATCCGC 594
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 513 TGCAGCAGCAGATTTTACAGCAGTTGATCCACCGTCAGGACCCCACGGGGAGGAATCCTC 572
Query 595 AGA-TGCAAGCTTTGCTTCAGCAGCAGAGACTGAGGCAACATCAGCAGATGCTTCAATCC 653
| | | |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 573 A-ATTCCAAGCTTTGCTTCAGCAGCAGAGACTCAGGCAACATCAGCAGATGCTTCAATCC 631
Query 654 ATGTCACCCTCTCAGAGACTCCAACTTCAGCAACAGCAGCAGCTGAGACAGCAGTTACAG 713
|||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 632 ATGTCACCCTCTCAGAGACTCCAACTTCAGCAGCAGCAGCAGTTGAGACAGCAATTACAG 691
Query 714 CAACAAGGAACCCAACAGATTCCTCCTAATGTACGTCCTTATGAAGTTGGCGTCTGTGCT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 692 CAACAAGGAACCCAACAGATTCCTCCTAATGTACGTCCTTATGAAGTTGGCGTGTGTGCT 751
Query 774 CGGAAATTGATGATGTACTTGTATCATCTGCAGCAACGGCCTGCTGAAAATTGCATTACC 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 CGGAAATTGATGATGTACTTGTATCATCTGCAGCAACGGCCTGCTGAAAATTGCATTACC 811
Query 834 TATTGGAGGAAATTTGTGGCAGAATACTTTTCACCTCGTGCAAAGCAGAGATTGTGCTTG 893
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 812 TATTGGAGGAAATTTGTGGCAGAATACTTCTCACCTCGTGCAAAGCAAAGGTTGTGCTTG 871
Query 894 TCACAGTACGAAAGTGCTGGGCACCATGCGCTTGGCATGTTCCCACAGGCAGCTCCGGAT 953
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 872 TCACAGTACGAAAGTGCTGGGCACCATGCACTTGGCATGTTTCCACAGGCAGCTCCGGAT 931
Query 954 ATGTGGCAGTGTGATCTTTGCGGCACCAAGTCTGGAAAGGGATTTGAGGCAACGTTTGAT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 ATGTGGCAGTGTGATCTTTGCGGCACCAAGTCTGGAAAGGGATTTGAGGCAACGTTTGAT 991
Query 1014 GTGCTTGCCAGACTAATTGAAATCAAATTTGCAAGTGGTATTATTGATGAGCTGTTATAT 1073
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 992 GTGCTTGCCAGACTTATTGAAATCAAATTTGCAAGTGGTATTATTGATGAGCTCTTATAT 1051
Query 1074 CTGGATCACCCTCGAGAAAACAGATTTCCCAATGGACTGATGATGTTAGAATATAGAAAA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 CTGGATCACCCTCGAGAAAACAGATTTCCCAATGGACTGATGATGTTAGAATATAGAAAA 1111
Query 1134 GCAGTTCAGGAAACTGTACACGAGCAGTTTCGTGTTGTCCGTGAGGGCCATCTTCGCATC 1193
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 1112 GCAGTTCAGGAAACTGTACACGAGCAGTTCCGTGTTGTCCGTGAAGGCCATCTTCGTATC 1171
Query 1194 ATATTTTCTCAAGATTTGAAGATACTTTCTTGGGAGTTTTGCGCTCGGCGTCATGAAGAG 1253
||||| ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1172 ATATTCTCTCAAGATCTGAAGATACTGTCTTGGGAGTTTTGTGCTCGGCGTCATGAAGAG 1231
Query 1254 CTTCTTCTTCGCAGACTTATTGCTCCACAGGTGAACCAATTGCTTCAGGTTGCACAGAAA 1313
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1232 CTTCTTCTTCGCAGACTTATTGCTCCGCAGGTGAACCAGTTACTTCAGGTTGCACAGAAA 1291
Query 1314 TGCCAGAGCACGATCTCAGAGAGTGGGTCAGAGGGGGTTTCTCAGCAGGATTTACAGTCA 1373
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1292 TGCCAGAGCACGATTTCAGACAGTGGGTCAGAGGGAGTTTCTCAGCAGGATTTACAGTCA 1351
Query 1374 AATAGTAACATGGTCTTGGGAGCAGGACGGCAACTGGCAAAGTTCATGGAACTACAGTCG 1433
|| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1352 AACAGTAACATGGTCTTGGGAGCTGGACGGCAACTGGCAAAGTTCATGGAATTACAGTCG 1411
Query 1434 CTGAATGATCTTGGCTATCCAAAAAGATATATCAGGACTCTGCAGATATCTGAAGTTGTC 1493
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1412 CTGAATGATCTTGGCTATCCAAAAAGATATATCAGAACTCTACAGATATCTGAAGTTGTC 1471
Query 1494 AAGAGCATGAAGGATCTGATGAATTTCACTGGCGAGCAAAAAATCGGTCCTATTGAGGGG 1553
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1472 AAGAGCATGAAGGATCTGATGAATTTCACTGGCGAGCACAAAATCGGTCCTATTGAAGGG 1531
Query 1554 TTGAAACGGCTTTTGGAACAGACGGTGACAGTGAAGCTACAGAAACAGAAAATGCAAGAG 1613
|||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 1532 TTGAAACGGCTTTTGGAACAGACGGTGACAGTGAAGATCCAGAGACAGAAAATGCAAGAG 1591
Query 1614 ATGGAGCAGTTTGGGAATAATGGAGCTATAAATGGGCCAGTTCAAGCTCAAATGG-TGTT 1672
||||||||||||||||||| | | |||| |||||||||| |||||||||||||| | ||
Sbjct 1592 ATGGAGCAGTTTGGGAATAGCGAATCTATGAATGGGCCAGCTCAAGCTCAAATGGCT-TT 1650
Query 1673 AACTTCAGGAACGA-TGAATGGCTCAACGGGCAATAACACCAATAATCACCATCAAATTG 1731
|||||||||||| | ||||||||||||| ||||| ||| |||||||| ||||||||||||
Sbjct 1651 AACTTCAGGAAC-AGTGAATGGCTCAACTGGCAACAACGCCAATAATAACCATCAAATTG 1709
Query 1732 TTGGTCGTGGAGCTATGAGTGGGCCAGCTGAAGGTCAAATGGTGATATCTTCAGGAACGG 1791
||||||||||||||||||||||||||||| ||| |||||||| | |||||||||| | |
Sbjct 1710 TTGGTCGTGGAGCTATGAGTGGGCCAGCTCAAGCTCAAATGGCGTTATCTTCAGGTATGA 1769
Query 1792 TGAGCGGCGCAACTGCCAACAACAACTCCAATAATCACAATCAAATTGTTGGTCGTGGAG 1851
||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1770 TGAGCGGTTCAACTGCCAACAACAACTCCAGTAATCACCATCAAATTGTTGGTCGTGGAG 1829
Query 1852 CTATGAATGGCTCTGCTCAAGCCGCAGCAGCTCTGACCAACTACCAAAGCATGCTTATGA 1911
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1830 CTATGAATGGCTCAGCTCAAGCCGCAGCAGCTCTGACCAACTACCAAAGCATGCTTATGA 1889
Query 1912 GGCAAAATGCTATGAATAACCCAAACTCAAATACGGGTAAACAAGAGGGGTTCTCGAGTC 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1890 GGCAAAATGCTATGAATAACCCAAACTCAAATACGGGTAAACAAGAGGGGTTCTCGAGTC 1949
Query 1972 AGAACCCAACCCCAAACTCAAACCAGAGTCCATCTTCTTCATCCCAGCAGAGGCATAACT 2031
||||||||||||| | |||||||||||| |||||||||||||||| |||||||| ||||
Sbjct 1950 AGAACCCAACCCCGATTTCAAACCAGAGTACATCTTCTTCATCCCATCAGAGGCAGAACT 2009
Query 2032 TAGTTACAGGTGGATTTCCCAACTCTCCTCAAATGCAACAGCAGCAGCGCACCATGAATG 2091
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2010 TAGTTACAGGTGGATTTCCCAGCTCTCCTCAAATGCAACAGCAGCAGCGCACCATGAATG 2069
Query 2092 GCCCTACCAACATACTTCCGCAGAATCATCCTCATCAGTTACAATCACCACATTCACATG 2151
||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2070 GCCCTCCCAACATACTTCCGCAGAATCATCCTCATCAGTTGCAATCACCACAGTCACATG 2129
Query 2152 GTAACACTCCGGAGCAGCAGATGCTTCATCAGCTGTTGCAGGAGATGTCTGAAAATGGAG 2211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2130 GTAACACTCCGGAGCAGCAGATGCTTCATCAGCTGTTGCAGGAGATGTCTGAAAATGGAG 2189
Query 2212 GGAGTGTGCAACAGCAACAAGCCTTTTCGGGTCAAAGTGGTAGCAACAGTAACGCAGAGA 2271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2190 CGAGTGTGCAACAGCAACAAGCCTTTTCGGGTCAAAGTGGTAGCAACAGTAACGCAGAGA 2249
Query 2272 GAAACACAACTGCCTCTACTTCCAACATCTCAGGAGGAGGCCGAGCTCCAAGTCGAAACA 2331
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2250 GAAACACAACGGCCTCTACTTCCAACATCTCAGGAGGAGGCCGAGCTCCAAGCCGAAACA 2309
Query 2332 ACAGTTTTAAAGCAGCCTCGAACAACAACCTTCATTTTTCAGAAGATATATCGATCACAG 2391
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 2310 ACAGTTTTAAAGCAGCCTCAAACAACAACCTTCATTTTTCAGAAGATATATCGATTACAG 2369
Query 2392 ACCATGATTTCTCAGAAGATGGCTTCTTCAACAACAATGATATCTATGGTGGCTTGTAAT 2451
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2370 ACCATGATTTCTCAGAAGATGGCTTCTTCAACAACAGCGATATCTATGGTGGCTTGTAAT 2429
Query 2452 ATTCCC-ACAGAAC-GCAGGCATTGTTACTTTGACTTAACACAGTGAAAGAGAATTTAGG 2509
|| ||| ||||||| | |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 2430 AT-CCCGACAGAACAG-AGGCATTGTTACTTTGACTTAACACAGTGAAAAAGACTTTAGG 2487
Query 2510 GCTTATTTTTCTCATTTAGGTTGGTCTTTGTATAGAAACCAAAGAGATATGAGGCCGGCC 2569
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2488 GCTTATTTTTCTCATTTAGGCTGGTCTTTGTATAGAAACCAAAGAGATATGAGGCCGGCC 2547
Query 2570 AATGAAGGAATTTGTGATTTGTTGTAACTTATCTATAGGAACTTTTAAGCATCTTCA-TT 2628
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||
Sbjct 2548 AATGAAGGAATTTGTGATTTGTTGTAACCTATCTATAGGAACTTTTA-GCATCTTCAATT 2606
Query 2629 TC--CCCTTTTAGAGATAGTAAGATTAAATCTTAGAT-A--ACTTCTGCAGACACTTTCA 2683
| ||||||||||||||| | || || |||||||| | | |||||||||||||||||
Sbjct 2607 TTTTCCCTTTTAGAGATAG-ATGA--AA-TCTTAGATTATGA-TTCTGCAGACACTTTCA 2661
Query 2684 AGTAATCTTATT 2695
||||||||||||
Sbjct 2662 AGTAATCTTATT 2673
Score = 128 bits (69), Expect = 2e-28
Identities = 114/135 (84%), Gaps = 5/135 (4%)
Strand=Plus/Plus
Query 1634 TGGAGCTATAAATGGGCCAGTTCAAGCTCAAATGGTGTTAACTTCAGGAACGATGAATGG 1693
||||||||| | |||||||| |||||||||||||| |||| ||||||| | ||||| ||
Sbjct 1717 TGGAGCTATGAGTGGGCCAGCTCAAGCTCAAATGGCGTTATCTTCAGGTATGATGAGCGG 1776
Query 1694 CTCAACGGGCAATAAC-A--CCAATAATCACCATCAAATTGTTGGTCGTGGAGCTATGAG 1750
||||| | ||| ||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 1777 TTCAACTGCCAACAACAACTCCAGTAATCACCATCAAATTGTTGGTCGTGGAGCTATGAA 1836
Query 1751 TGGGC-CAGCTGAAG 1764
||| | ||||| |||
Sbjct 1837 TGG-CTCAGCTCAAG 1850
> Ahg354233 jgi|Araly1|354233|fgenesh1_pg.C_scaffold_7001406
Length=1992
Score = 1799 bits (974), Expect = 0.0
Identities = 1332/1490 (89%), Gaps = 83/1490 (6%)
Strand=Plus/Plus
Query 282 ATGCAGAGGAGCAGTGGCATCAATAATAATATGCGTATCCCAACATCACC-GATGTCTTT 340
|||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1 ATGCAGAGGAGCAGTGCCATCAATAATAATATGCGTATCCCAACATCACCTG-TGTCTTT 59
Query 341 CTCCTCGAATAGCGTTAACATACCGGGTTCATTGGTTCTTGATGGCTCTGCTGCTTCAAT 400
|||| ||| |||| |||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 60 CTCCCCGAGTAGCATTAACATACCTGGTTCATTGGTTCTTGATGG--CT-CTGCTTCAAT 116
Query 401 GCAACACTTACCTcagcagcagcagcagcaACTACTACAACAGCAAACAGGACAAGGTTC 460
||||||||||||| |||||||||||| ||| || | | |
Sbjct 117 GCAACACTTACCT---CAGCAGCAGCAG------------CAG----CA-G-C------C 149
Query 461 TGTTCCAATGAGGGAGAACAATTATTCCCATGTGGATAAGAAACCCAGATTAGAAGTGAA 520
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 TGTTCCAATGAGGGAAAACAATTATTCCCATGTGGATAAGAAACCCAGATTAGAAGTGAA 209
Query 521 GCAAGAAGA-TATGTTGCAGCAGCAGATTTTACAGCAGTTGATCCAGCGTCAGGACCCCA 579
||| ||||| | |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 210 GCACGAAGACT-TGTTGCAGCAGCAGATTTTACAGCAGTTGATCCACCGTCAGGACCCCA 268
Query 580 CGGGGAGGAATCCGCAGATGCAAGCTTTGCTTCAGCAGCAGAGACTGAGGCAACATCAGC 639
|||| |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 269 CGGGAAGGAATCCGCAGTTGCAAGCTTTGCTTCAGCAGCAGAGACTCAGGCAACACCAGC 328
Query 640 AGATGCTTCAATCCATGTCACCCTCTCAGAGACTCCAACTTCAGCAACAGCAGCAGCTGA 699
||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||
Sbjct 329 AGATGCTTCAATCCATGTCACCCTCCCAGAGGCTCCAACTTCAGCACCAGCAGCAGTTGA 388
Query 700 GACAGCAGTTACAGCAACAAGGAACCCAACAGATTCCTCCTAATGTACGTCCTTATGAAG 759
||||||| |||||| | || ||||||||| ||||||| | | | ||
Sbjct 389 GACAGCAATTACAG---C----AA--CAACAGATTTCTCCTAA--T--G------T--AG 427
Query 760 TTGGCGTCTGTGCTCGGAAATTGATGATGTACTTGTATCATCTGCAGCAACGGCCTGCTG 819
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 TTGGCGTCTGTGCTCGCAAATTGATGATGTACTTGTATCATCTGCAGCAACGGCCTGCTG 487
Query 820 AAAATTGCATTACCTATTGGAGGAAATTTGTGGCAGAATACTTTTCACCTCGTGCAAAGC 879
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 488 AAAATTGCATTACCTATTGGAGGAAATTTGTGGCAGAATACTTCTCACCTCGTGCAAAGC 547
Query 880 AGAGATTGTGCTTGTCACAGTACGAAAGTGCTGGGCACCATGCGCTTGGCATGTTCCCAC 939
| || |||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 548 AAAGGTTGTGCTTGTCACAGTACGAAAGTGCTGGGCACCATGCGCTTGGCATGTTTCGAC 607
Query 940 AGGCAGCTCCGGATATGTGGCAGTGTGATCTTTGCGGCACCAAGTCTGGAAAGGGATTTG 999
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 608 AGGCAGCTCCGGATATGTGGCAGTGTGATCTTTGCGGCACCAAGTCTGGAAAAGGATTTG 667
Query 1000 AGGCAACGTTT-GATGTGCTTGCCAGACTAATTGAAATCAAATTTGCAAGTGGTATTATT 1058
| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 668 AAGCAAC-TTTCGATGTGCTTGCCAGACTTATTGAAATCAAATTTGCAAGTGGCATCATT 726
Query 1059 GATGAGCTGTTATATCTGGATCACCCTCGAGAAAACAGATTTCCCAATGGACTGATGATG 1118
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 727 GATGAGCTCTTATATCTGGACCACCCACGAGAAAACAGATTTCCCAATGGACTGATGATG 786
Query 1119 TTAGAATATAGAAAAGCAGTTCAGGAAACTGTACACGAGCAGTTTCGTGTTGTCCGTGAG 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TTAGAATATAGAAAAGCAGTTCAGGAAACTGTACACGAGCAGTTTCGTGTTGTCCGTGAG 846
Query 1179 GGCCATCTTCGCATCATATTTTCTCAAGATTTGAAGATACTTTCTTGGGAGTTTTGCGCT 1238
|||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |||
Sbjct 847 GGCCATCTTCGCATCATATTCTCTCAAGATCTGAAGATACTGTCTTGGGAGTTTTGTGCT 906
Query 1239 CGGCGTCATGAAGAGCTTCTTCTTCGCAGACTTATTGCTCCACAGGTGAACCAATTGCTT 1298
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 907 CGGCGTCATGAAGAGCTTCTTCTTCGCAGACTTATTGCTCCTCAGGTGAACCAGTTGCTT 966
Query 1299 CAGGTTGCACAGAAATGCCAGAGCACGATCTCAGAGAGTGGGTCAGAGGGGGTTTCTCAG 1358
|||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||
Sbjct 967 CAGGTTGCACAGAAATGCCAGAGCACAATTTCAGAGAGTGGTTCAGAGGGAGTTTCTCAG 1026
Query 1359 CAGGATTTACAGTCAAATAGTAACATGGTCTTGGGAGCAGGACGGCAACTGGCAAAGTTC 1418
|||||||| |||||||| ||||| |||||||||||||||||||| || ||||| ||||||
Sbjct 1027 CAGGATTTGCAGTCAAACAGTAATATGGTCTTGGGAGCAGGACGACAGCTGGCGAAGTTC 1086
Query 1419 ATGGAACTACAGTCGCTGAATGATCTTGGCTATCCAAAAAGATATATCAGGACTCTGCAG 1478
|||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1087 ATGGAATTACAGTCACTGAATGATCTTGGCTATCCAAAAAGATATATCAGAACTCTACAG 1146
Query 1479 ATATCTGAAGTTGTCAAGAGCATGAAGGATCTGATGAATTTCACTGGCGAGCAAAAAATC 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1147 ATATCTGAAGTTGTCAAGAGCATGAAGGATCTGATGAATTTCACTGGCGAGCACAAAATC 1206
Query 1539 GGTCCTATTGAGGGGTTGAAACGGCTTTTGGAACAGACGGTGACAGTGAAGCTACAGAAA 1598
|| ||||| ||||| || |||| |||| |||||||||| | |||||||||||| |||| |
Sbjct 1207 GGCCCTATCGAGGGTTTAAAACAGCTTCTGGAACAGACAGCGACAGTGAAGCTCCAGAGA 1266
Query 1599 CAGAAAATGCAAGAGATGGAGCAGTTTGGGAATAATGGAGCTATAAATGGGCCAGTTCAA 1658
|||||||||||||||||||||||||||||| | | | | | |||
Sbjct 1267 CAGAAAATGCAAGAGATGGAGCAGTTTGGGC---------C-A-----G--C---T-CAA 1305
Query 1659 GCTCAAATGGTGTTAACTTCAGGAACGATGAATGGCTCAACGGGCAATAACA-C-C-AAT 1715
|||||||||| |||| ||||||| ||||||| || ||||| | ||| |||| | | |||
Sbjct 1306 GCTCAAATGGCGTTATCTTCAGGTACGATGAGCGGTTCAACTGCCAACAACAACTCCAAT 1365
Query 1716 AATCACCATCAAATTGTTGGTCGTGGAGCTATGAGTGGGC-CAGCTGAAG 1764
|||||||||||||||||||||||||||||||||| ||| | ||||| |||
Sbjct 1366 AATCACCATCAAATTGTTGGTCGTGGAGCTATGAATGG-CTCAGCTCAAG 1414
Score = 1038 bits (562), Expect = 0.0
Identities = 654/700 (93%), Gaps = 0/700 (0%)
Strand=Plus/Plus
Query 1751 TGGGCCAGCTGAAGGTCAAATGGTGATATCTTCAGGAACGGTGAGCGGCGCAACTGCCAA 1810
|||||||||| ||| |||||||| | |||||||||| ||| ||||||| ||||||||||
Sbjct 1293 TGGGCCAGCTCAAGCTCAAATGGCGTTATCTTCAGGTACGATGAGCGGTTCAACTGCCAA 1352
Query 1811 CAACAACTCCAATAATCACAATCAAATTGTTGGTCGTGGAGCTATGAATGGCTCTGCTCA 1870
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1353 CAACAACTCCAATAATCACCATCAAATTGTTGGTCGTGGAGCTATGAATGGCTCAGCTCA 1412
Query 1871 AGCCGCAGCAGCTCTGACCAACTACCAAAGCATGCTTATGAGGCAAAATGCTATGAATAA 1930
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 AGCCGCAGCAGCTTTGACCAACTACCAAAGCATGCTTATGAGGCAAAATGCTATGAATAA 1472
Query 1931 CCCAAACTCAAATACGGGTAAACAAGAGGGGTTCTCGAGTCAGAACCCAACCCCAAACTC 1990
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1473 CCCAAACTCAAATACGGGTAAACAAGAGGGGTTCTCGAGTCAGAATCCAACCCCGAACTC 1532
Query 1991 AAACCAGAGTCCATCTTCTTCATCCCAGCAGAGGCATAACTTAGTTACAGGTGGATTTCC 2050
||||||||||||||||||||| || | |||||||| ||||||| |||||||||||||||
Sbjct 1533 AAACCAGAGTCCATCTTCTTCGTCAGATCAGAGGCAGAACTTAGCTACAGGTGGATTTCC 1592
Query 2051 CAACTCTCCTCAAATGCAACAGCAGCAGCGCACCATGAATGGCCCTACCAACATACTTCC 2110
|| |||||||||||||||||||||| |||||||||| ||||| || ||| ||| |||||
Sbjct 1593 CAGTTCTCCTCAAATGCAACAGCAGCGGCGCACCATGGATGGCGCTCCCAGCATGCTTCC 1652
Query 2111 GCAGAATCATCCTCATCAGTTACAATCACCACATTCACATGGTAACACTCCGGAGCAGCA 2170
|||||||||||||| |||||| |||||| |||| |||||||||||||||| |||||||||
Sbjct 1653 GCAGAATCATCCTCGTCAGTTGCAATCAGCACAGTCACATGGTAACACTCGGGAGCAGCA 1712
Query 2171 GATGCTTCATCAGCTGTTGCAGGAGATGTCTGAAAATGGAGGGAGTGTGCAACAGCAACA 2230
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1713 GATGCTTCATCAGCTGTTGCAGGAGATGTCTGAAAATGGAGCGAGTGTGCAACAGCAACA 1772
Query 2231 AGCCTTTTCGGGTCAAAGTGGTAGCAACAGTAACGCAGAGAGAAACACAACTGCCTCTAC 2290
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 AGCCTTTTTGGGTCAAAGTGGTAGCAACAGTAACGCAGAGAGAAACACAACTGCCTCTAC 1832
Query 2291 TTCCAACATCTCAGGAGGAGGCCGAGCTCCAAGTCGAAACAACAGTTTTAAAGCAGCCTC 2350
|||||||||||||||||||||||||| |||||| || ||||| |||||||||||||||||
Sbjct 1833 TTCCAACATCTCAGGAGGAGGCCGAGTTCCAAGCCGCAACAATAGTTTTAAAGCAGCCTC 1892
Query 2351 GAACAACAACCTTCATTTTTCAGAAGATATATCGATCACAGACCATGATTTCTCAGAAGA 2410
||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1893 AAACAACAACCTTCCTTTTTCAGAAGATATATCGGTTTCGGACCATGATTTCTCAGAAGA 1952
Query 2411 TGGCTTCTTCAACAACAATGATATCTATGGTGGCTTGTAA 2450
|||||||||||||| || ||||||||||||||||||||||
Sbjct 1953 TGGCTTCTTCAACATCAGTGATATCTATGGTGGCTTGTAA 1992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102691300520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5