BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25540.1
Length=3487
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492273 jgi|Araly1|492273|fgenesh2_kg.7__1706__AT4G25540.1 5192 0.0
> Ahg492273 jgi|Araly1|492273|fgenesh2_kg.7__1706__AT4G25540.1
Length=3479
Score = 5192 bits (2811), Expect = 0.0
Identities = 3280/3501 (94%), Gaps = 54/3501 (2%)
Strand=Plus/Plus
Query 1 CTAAGAAAGCGCGCGAAAATTGGCAACCCAAGTTCGCCATAGCCACGACCACGACCTTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTAAGAAAGCGCGCGAAAATTGGCAACCCAAGTTCGCCATAGCCACGACCACGACCTTCC 60
Query 61 ATTTCTCTTAAACGGA-G-GAGATTACGAATAAAGCAATTATGGGCAAGCAAAAGCAGCA 118
|||||||||||||||| | |||| |||||| | |||||||||||||||||||||||||||
Sbjct 61 ATTTCTCTTAAACGGAGGAGAGAATACGAAGAGAGCAATTATGGGCAAGCAAAAGCAGCA 120
Query 119 GACGATTTCTCGTTTCTTCGCTCCCAAACCCAAATCCCCGACTCACGAACCGAATCCGGT 178
|||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 121 GACGATTTCTCGATTCTTCGCTCCCAAACCCAAATCCCCGACTCAGGAACCCAATCTTGT 180
Query 179 AGCCGAATCATCAACACCGCCACCGAAGATATCCGCCACTGTATCCTTCTCTCCTTCCAA 238
| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 181 ACCCGAATCGTCAACACCGCCACCGAAGATATCCGCCACTGTCTCCTTCTCTCCGTCTAA 240
Query 239 GCGTAAGCTTCTCTCCGACCACCTCGCCGCCGCGTCACCCAAAAAGCCTAAACTTTCTCC 298
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 GCGTAAGCTTCTCTCCGACCACCTCGCCGCCGCTTCACCCAAAAAGCCTAAACTTTCTCC 300
Query 299 TCACACTCAAAA-CCCAGTACCCGATCCCAATTTACACCAAAGATTTCTCCAGAGATTTC 357
|||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 TCACACTCAAAACCCCA-TACCCGATCCCAATTTACACCAAAGGTTTCTCCAGAGATTTC 359
Query 358 TGGAACCCTCGCCGGAGGAATATGTTCCCG-AA-A-CGTCATCATCGAGGAAATACACAC 414
|||||||||| |||||||||| |||||||| || | | |||||||| ||||| ||||| |
Sbjct 360 TGGAACCCTCACCGGAGGAATCTGTTCCCGAAACATCATCATCATCCAGGAAGTACACGC 419
Query 415 CATTGGAACAGCAAGTGGTGGAGCTAAAGAGCAAGTACCCAGATGTGGTTTTGATGGTGG 474
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 CACTGGAACAGCAGGTGGTGGAGCTAAAGAGCAAGTACCCAGATGTGGTTTTGATGGTTG 479
Query 475 AAGTTGGTTACAGGTACAGATTCTTCGGAGAAGACGCGGAGATCGCAGCACGCGTGTTGG 534
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 480 AAGTTGGTTACAGGTACAGATTCTTCGGAGAAGATGCGGAGATCGCAGCACGCGTCTTGG 539
Query 535 GTATTTACGCTCATATGGATCACAATTTCATGACGGCGAGTGTGCCAACATTTCGATTGA 594
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 GTATATACGCTCATATGGATCACAGTTTCATGACGGCGAGTGTGCCAACATTTCGATTGA 599
Query 595 ATTTCCATGTGAGAAGACTGGTGAATGCAGGATACAAGATTGGTGTAGTGAAGCAGACTG 654
||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 600 ATTTCCATGTGAGGAGACTGGTGAATGCAGGGTACAAGATTGGTGTGGTGAAGCAGACCG 659
Query 655 AAACTGCAGCCATTAAGTCCCATGGTGCAAACCGGACCGGCCCTTTTTTCCGGGGACTGT 714
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 660 AAACTGCAGCCATTAAGTCCCACGGTGCAAACCGGACCGGCCCTTTTTTCCGGGGACTAT 719
Query 715 CGGCGTTGTATACCAAAGCCACGCTTGAAGCGGCTGAGGATATAAGTGGTGGTTGTGGTG 774
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 720 CGGCTTTATATACCAAAGCCACGCTTGAAGCGGCTGAGGATATAAGTGGTGGTTGCGCTG 779
Query 775 GTGAAGAAGGTTTTGGTTCACAGAGTAATTTCTTGGTTTGTGTTGTGGATGAGAGAGTTA 834
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTGAAGAAGGTTTTGGTGCACAGAGTAATTTCTTGGTTTGTGTTGTGGATGAGAGAGTTA 839
Query 835 AGTCGGAGACATTAGGCTGTGGTATTGAAATGAGTTTTGATGTTAGAGTCGGTGTTGTTG 894
| ||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACACGGAG-----A--C--TGGTATTGAAATGAGTTTTGATGTTAGAGTCGGTGTTGTTG 890
Query 895 GCGTTGAAATTTCGACAGGTGAAGTTGTTTATGAAGAGTTCAATGATAATTTCATGAGAA 954
||||||||||||| || |||||||||||||||| |||||| ||||||||||||||||| |
Sbjct 891 GCGTTGAAATTTCAACCGGTGAAGTTGTTTATGGAGAGTTTAATGATAATTTCATGAGGA 950
Query 955 GTGGATTAGAGGCTGTGATTTTGAGCTTGTCACCAGCTGAGCTGTTGCTTGGCCAGCCTC 1014
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GTGGGTTAGAGGCTGTGATTTTGAGCTTGTCACCAGCTGAGCTGTTGCTTGGCCAGCCTC 1010
Query 1015 TTTCACA-ACAAACTGAGAAGTTTTTGGTGGCACATGCTGGACCTACCTCAAACGTTCGA 1073
||||||| | ||||||||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct 1011 TTTCACAGA-AAACTGAGAAGTTTTTGTTGGCACATGCTGGACCGACCTCAAACATTCGA 1069
Query 1074 GTGGAACGTGCCTCACTGGATTGTTTCAGCAATGGTAATGCAGTAGATGAGGTTATTTCA 1133
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1070 GTGGAACGTGCCTCACTGGATCGTTTCGGCAATGGTAATGCAGTAGATGAGGTTATTTCA 1129
Query 1134 TTATGTGAAAAAATCAGCGCAGGTAACTTAGAAGATGATAAAGAAATGAAGCTGGAGGCT 1193
||||||||||||||||| ||| | ||| ||||||||||||||||||| ||| ||||||||
Sbjct 1130 TTATGTGAAAAAATCAGTGCAAGCAACCTAGAAGATGATAAAGAAATCAAGGTGGAGGCT 1189
Query 1194 GCTGAAAAAGGAATGTCTTGCTTGACAGTTCATACAATTATGAACATGCCACATCTGACT 1253
|||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1190 GCTGAAGAAGGAATGTCTTGCTTGACAGTTCACACAATTATGAACATGCCGCATCTGACT 1249
Query 1254 GTTCAAGCCCTCGCCCTAACGTTTTGCCATCTCAAACAGTTTGGATTTGAAAGGATCCTT 1313
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GTTCAAGCCCTCGCCCTGATATTTTGCCATCTCAAACAGTTTGGATTTGAAAGGATCCTT 1309
Query 1314 TACCAAGGGGCCTCATTTCGCTCTTTGTCAAGTAACACAGAGATGACTCTCTCAGCCAAT 1373
||||| ||||| |||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 1310 TACCAGGGGGCTTCATTTCGCTCTCTGTCAAGCAGCACAGAGATGACTCTCTCAGCCAAT 1369
Query 1374 ACTCTGCAACAGTTGGAGGTTGTGAAAAATAATTCAGATGGATCGGAATCTGGCTCCTTA 1433
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1370 ACACTGCAACAGTTGGAGGTTGTGAGAAATAATTCAGATGGATCGGAATCTGGCTCCTTA 1429
Query 1434 TTCCATAATATGAATCACACACTTACAGTATATGGTTCCAGGCTTCTTAGACACTGGGTG 1493
|||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||
Sbjct 1430 TTCCATAATATGAATCACACTCTTACAGTATATGGTTCCCGGCTCCTTAGACACTGGGTG 1489
Query 1494 ACTCATCCTCTATGCGATAGAAATTTGATATCTGCTCGGCTTGATGCTGTTTCTGAGATT 1553
||||||||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1490 ACTCATCCTCTTTGCAATAGAAATCTGATATCTGCTCGCCTTGATGCTGTTTCTGAGATT 1549
Query 1554 TCTGCTTGCATGGGATCTCATAGTTCTTCCCAGCTCAGCAG-TGAGTTGGTTGAAGAAGG 1612
|||| |||||||||||||| ||||| ||||| ||| | ||||||||||||||| ||
Sbjct 1550 GCTGCATGCATGGGATCTCACAGTTCATCCCAAAACAG-TGATGAGTTGGTTGAAGACGG 1608
Query 1613 TTCTGAGAGAGCAATTGTATCACCTGAGTTTTATCTCGTGCTCTCCTCAGTCTTGACAGC 1672
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 TTCTGAGAGAACAATTGTTTCACCTGAGTTTTATCTCGTGCTCTCCTCAGTCTTGACAGC 1668
Query 1673 TATGTCTAGATCATCTGATATTCAACGTGGAATAACAAGAATCTTTCATCGGACTGCTAA 1732
| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 TTTGTCTAGATCTTCGGATATTCAACGTGGAATAACAAGAATCTTTCATCGGACTGCTAA 1728
Query 1733 AGCCACAGAGTTCATTGCAGTTATGGAAGCTATTTTACTTGCGGGGAAGCAAATTCAGCG 1792
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1729 AGCCACAGAGTTCATTGCAGTTATGGAAGCTATTTTACTTGCGGGGAAGCAATTTCAGCG 1788
Query 1793 GCTTGGCATAAAGCAAGACTCTGAAATGAGGAGTATGCAATCTGCAACTGTGC-GATCTA 1851
|||||| ||||||||||||| ||||||||||||||||||||| |||||||||| | |||
Sbjct 1789 GCTTGGTATAAAGCAAGACTGTGAAATGAGGAGTATGCAATCCGCAACTGTGCAG-TCTT 1847
Query 1852 CTCTTTTGAGAAAATTGATTTCTGTTATTTCATCCCCTGTTGTGGTTGACAATGCCGGAA 1911
||||||||| ||||||||| |||||| |||||||||||| ||||||||| ||||||| ||
Sbjct 1848 CTCTTTTGAAAAAATTGATATCTGTTGTTTCATCCCCTGCTGTGGTTGATAATGCCGCAA 1907
Query 1912 AACTTCTCTCTGCCCTAAATAAGGAAGCGGCTGTTCGAGGTGACTTGCTCGACATACTAA 1971
|||||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||
Sbjct 1908 AACTTCTCTCTGCCCTGAATAAGGAAGGGGCTGTTCGAGGAGATTTGCTCGACATACTAA 1967
Query 1972 TCACTTCCAGCGACCAATTTCCTGAGCTTGCTGAAGCTCGCCAAGCAGTTTTAGTCATCA 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 TCACTTCCAGCGACCAATTTCCTGAGCTTGCTGAAGCTCGCCAAGCAGTTTTAGTCATCA 2027
Query 2032 GGGAAAAGCTGGATTCCTCGATAGCTTCATTTCGCAAGAAGCTCGCTATTCGAAATTTGG 2091
||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||
Sbjct 2028 AGGAAAAGCTGGATTCCTTGATATCTTCATTTCGCAAGAAGCTCGCAATTCGAAATTTGG 2087
Query 2092 AATTTCTTCAAGTGTCGGGGATCACACATTTGATAGAGCTGCCCGTTGAT-TCCAAGGTC 2150
||||||||||||||||||||||||| |||||||||||||||||||| ||| || ||||||
Sbjct 2088 AATTTCTTCAAGTGTCGGGGATCACGCATTTGATAGAGCTGCCCGTGGATGTC-AAGGTC 2146
Query 2151 CCTATGAATTGGGTGAAAGTAAATAGCACCAAGAAGACTATTCGATATCATCCCCCAGAA 2210
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 2147 CCTATGAATTGGGTGAAAGTGAATAGCACCAAAAAGACTATTCGATATCATCCCCCAGAA 2206
Query 2211 ATAGTAGCTGGCTTGGATGAGCTAGCTCTAGCAACTGAACATCTTGCCATTGTGAACCGA 2270
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2207 ATAGTAGCTGGGTTGGATGAGCTAGCTCTAGCAACTGAACATCTTGCCATTGTGAACCGA 2266
Query 2271 GCTTCGTGGGATAGTTTCCTCAAGAGTTTCAGTAGATACTACACAGATTTTAAGGCTGCC 2330
||||||||||||||||| ||| ||||||| ||||||||||| ||||||||| ||||||||
Sbjct 2267 GCTTCGTGGGATAGTTTTCTCGAGAGTTTTAGTAGATACTATACAGATTTTCAGGCTGCC 2326
Query 2331 GTTCAAGCTCTTGCTGCACTGGACTGTTTGCACTCCCTTTCAACTCTATCTAGAAACAAG 2390
||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 2327 GTTCAAGCTCTTGCTGCGCTGGACTGTTTACACTCCCTTGCAACTCTATCTAGAAACAAG 2386
Query 2391 AACTATGTCCGTCCCGAGTTTGTGGATGACTGTGAACCAGTTGAGATAAACATACAGTCT 2450
|| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2387 AAGTATGTATGTCCCGTGTTTGTGGATGACTGTGAACCAGTTGAGATAAACATACAGTCT 2446
Query 2451 GGTCGTCATCCTGTACTGGAGACTATATTACAAGATAACTTCGTCCCAAATGACACAATT 2510
||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 2447 GGTCGTCATCCTGTATTGGAGACTTTATTACAAGATAACTTCGTCCCAAACGACACAAGT 2506
Query 2511 TTGCATGCAGAAGGGGAATATTGCCAAATTATCACCGGACCTAACATGGGAGGAAAGAGC 2570
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2507 TTGCATGCAAAAGGGGAATATTGCCAAATTATCACCGGACCTAACATGGGAGGAAAGAGC 2566
Query 2571 TGCTATATCCGTCAAGTTGCTTTAATTTCCATAATGGCTCAGGTTGGTTCCTTTGTACCA 2630
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2567 TGTTATATCCGTCAAGTTGCTTTAATTTCTATAATGGCTCAGGTTGGTTCCTTTGTACCA 2626
Query 2631 GCGTCATTCGCCAAGCTGCACGTGCTTGATGGTGTTTTCACTCGGATGGGTGCTTCAGAC 2690
|| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2627 GCTTCATCCGTTAAGCTGCACGTGCTTGATGGTGTTTTCACTCGGATGGGTGCTTCAGAC 2686
Query 2691 AGTATCCAGCATGGCAGAAGTACCTTTCTAGAAGAATTAAGTGAAGCGTCACACATAATC 2750
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2687 AGTATCCAGCATGGCCGAAGTACCTTTCTAGAAGAATTAAGTGAAGCGTCACACATAATC 2746
Query 2751 AGAACCTGTTCTTCTCGTTCGCTTGTTATATTAGATGAGCTTGGAAGAGGCACTAGCACA 2810
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 2747 AGAACCTGCTCTTCTCGTTCGCTAGTTATATTAGATGAACTTGGAAGAGGCACTAGCACA 2806
Query 2811 CACGACGGTGTAGCCATTGCCTATGCAACATTACAGCATCTCCTAGCAGAAAAGAGATGT 2870
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 2807 CACGACGGTGTAGCCATTGCCTATGCAACATTACAACATCTCCTATTAGAAAAGAGATGT 2866
Query 2871 TTGGTTCTTTTTGTCACGCATTACCCTGAAATAGCTGAGATCAGTAACGGATTCCCAGGT 2930
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2867 TTGGTTCTTTTTGTCACGCATTACCCTGAAATAGCTGAGATCAGTAACGGATTCCGAGGT 2926
Query 2931 TCTGTTGGGACATACCATGTCTCGTATCTGACATTGCAGAAGGATAAAGGCAG-TTATGA 2989
||||||||||||||||||||||||||||||||| ||||||| | ||| || | || |||
Sbjct 2927 GCTGTTGGGACATACCATGTCTCGTATCTGACATCGCAGAAGAAGAAAAGCGGATT-TGA 2985
Query 2990 TCATGATGATGTGACCTACCTATATAAGCTTGTGCGTGGTCTTTGCAGCAGGAGCTTTGG 3049
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2986 TCATGATGATGTGACCTACCTATATAAACTTGTGCGTGGTCTTTGCAGCAGGAGCTTTGG 3045
Query 3050 TTTTAAGGTTGCTCAGCTTGCCCAGATACCTCCATCATGTATACGTCGAGCCATTTCAAT 3109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3046 TTTTAAGGTTGCTCAGCTTGCCCAGATACCTCCATCATGTATACGTCGAGCCATTTCAAT 3105
Query 3110 GGCTGCAAAATTGGAAGCTGAGGTACGTGCAAGAGAGAGAAATACACGCATGGGAGAACC 3169
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 3106 GGGTGCAAAATTGGAAGCTGAGGTAGGTGCAAGAGAGAGAAATACACGCATGGGAGAAGC 3165
Query 3170 AGAAGGACATGAAGAAC------C----G-AGA--GG-C-G-C--AGAAGAATCTATTTC 3211
||||||||||||||||| | | ||| || | | | ||||||||| |||||
Sbjct 3166 AGAAGGACATGAAGAACATGGTGCCCCTGGAGATTGGACAGGCGCAGAAGAATCAATTTC 3225
Query 3212 GGCTCTAGGTGACTTGTTTGCAGACCTGAAATTTGCTCTCTCTGAAGAGGACCCTTGGAA 3271
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 3226 GGCTCTAGGTGACTTGTTTGCTGACCTGAAATTTGCCCTCTCTGAAGAGGACCCTTGGAA 3285
Query 3272 AGCATTCGAGTTTTTAAAGCATGCTTGGAAGATTGCTGGCAAAATCAGACTAAAACCAAC 3331
|||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||
Sbjct 3286 AGCATTCGAGTTTTTAAATCATGCTTGGAAGATTGC-GGCAAAATCAAACTAAAACCAAC 3344
Query 3332 TTGTTCATTTTGATTTAATCTTAACATTATAGCAACTGCAAGGTCTTGATCATCTGTTAG 3391
||| |||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 3345 TTGATCATTTTGATTTAATCTTAACATTATAGCAACTGCAAGGTTTTGA--A---GTTAG 3399
Query 3392 TTGCGTA-CTAACTTATGTGT--ATTAGTATAACAAGAAAAGAGAATTAGAGAGATGGAT 3448
||||||| | ||||||||||| |||||||||||||||||| ||||||||||||| ||||
Sbjct 3400 TTGCGTAGC-AACTTATGTGTGTATTAGTATAACAAGAAAACAGAATTAGAGAGACGGAT 3458
Query 3449 TCTAATCCGGTGTTGCAGTAC 3469
||||||||||||||| |||||
Sbjct 3459 TCTAATCCGGTGTTGTAGTAC 3479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131679202580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5