BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25550.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492272 jgi|Araly1|492272|fgenesh2_kg.7__1705__AT4G25550.1 1386 0.0
> Ahg492272 jgi|Araly1|492272|fgenesh2_kg.7__1705__AT4G25550.1
Length=1004
Score = 1386 bits (750), Expect = 0.0
Identities = 944/1031 (92%), Gaps = 39/1031 (4%)
Strand=Plus/Plus
Query 6 TAATTCTCCGTCGAGATCGCTTCTCTCC-CCGTTGCCGTCCG-TCCCCACCGCTGAGTGA 63
||||||||||||||||| ||||||||| |||||||||| || | || |||||||| ||
Sbjct 1 TAATTCTCCGTCGAGATTACTTCTCTCCTCCGTTGCCGT-CGAACGCCGCCGCTGAGCGA 59
Query 64 TAGATCGAAACAGAGAAACACACAC-GGCGAAGAAGATTTCACCATATTTTGTCTAAGTG 122
|||||||||||||||| |||||||| || ||||||||||||| | |
Sbjct 60 TAGATCGAAACAGAGAGACACACACGGGGGAAGAAGATTTCA-C---------C------ 103
Query 123 GATTCTGTTgagagagagagaTGGCTATGTCTCAGGTGGTGAACACGTACCCGCTTTCGA 182
||| | || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 104 -ATT-T-TT--GAGAGAGAGATGGCTATGTCTCAGGTGGTGAACACGTACCCGCTTTCCA 158
Query 183 ACTACAGCTTCGGAACTAAGGAACCCAAGCTGGAAAAGGACACCTCCGTCGCCGACCGGC 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 ACTACAGCTTCGGAACTAAGGAACCCAAGCTGGAAAAGGACACCTCCGTCGCCGACCGGC 218
Query 243 TCGCTCGTATGAAAATCAACTATATGAAAGAGGGCATGAGGACTAGCGTTGAAGGGATTC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 TCGCTCGTATGAAAATCAACTATATGAAAGAGGGCATGAGGACTAGCGTTGAAGGGATTC 278
Query 303 TACTGGTGCAAGAACACAACCATCCTCATATACTTCTGCTACAAATTGGTAACACATTCT 362
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 279 TACTGGTGCAAGAACACAACCATCCTCATATACTTCTGCTGCAAATTGGTAACACATTCT 338
Query 363 GCAAACTTCCAGGTGGACGCCTGAAGCCTGGTGAAAATGAAGCTGATGGTCTGAAAAGAA 422
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 339 GCAAACTTCCAGGTGGACGCCTGAAGCCTGGAGAAAATGAAGTTGATGGTCTGAAAAGAA 398
Query 423 AGCTGACCAGTAAACTTGGAGGCAATTCGGCTGCTCTTGTACCTGACTGGACGGTAGGAG 482
|| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 399 AGTTGACCAGTAAGCTTGGAGGCAATTCGGCTGCTCTTGTACCTGACTGGAAGGTAGGAG 458
Query 483 AATGTGTTGCGACATGGTGGCGTCCAAACTTTGAAACCATGATGTACCCGTATTGCCCTC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 AATGTGTTGCGACATGGTGGCGTCCAAACTTTGAAACCATGATGTACCCGTATTGCCCTC 518
Query 543 CTCACATCACGAAACCAAAGGAATGCAAGAGACTCTACATTGTTCACTTGTCTGAGAAAG 602
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 519 CTCACATCACAAAACCAAAGGAATGCAAGAGACTCTTCATTGTTCACTTGTCTGAGAAAG 578
Query 603 AGTACTTTGCTGTGCCCAAAAATTTGAAGCTCTTGGCCGTCCCTTTGTTCGAACTCTATG 662
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 579 AGTACTTTGCTGTGCCCAAAAACTTGAAACTCTTGGCCGTCCCTTTGTTCGAACTCTATG 638
Query 663 ACAATGTTCAGAGATATGGACCGGTTATATCAACCATTCCGCAGCAGCTATCCAGATTCC 722
||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct 639 ACAATGTTCAGAGATATGGACCGGTTATATCGACCATACCTCAACAGCTATCCAGATTCC 698
Query 723 ATTTCAACATGATTAGTTCGTGATTTCGACTCGGTGTGTTCAAGAACAAGGAA-CCTATC 781
||||||||||||||||||||||||| | |||||||||||||||||||||| || ||| ||
Sbjct 699 ATTTCAACATGATTAGTTCGTGATT-CTACTCGGTGTGTTCAAGAACAAG-AAGCCTGTC 756
Query 782 AG-ATGGGTAAGTTACTTAGGTACGGTAGAGAGCTGTAGCTACCGGATTAGAGATGGGGT 840
|| |||| |||||| |||||||||||||||||||||||||||||| ||||||||| |
Sbjct 757 AGGATGGC-AAGTTATTTAGGTACGGTAGAGAGCTGTAGCTACCGGTTTAGAGATGATAT 815
Query 841 TTTCCAATGATGCGAGTTGGGTTTTT-T----G-CATTATAGACTTGTTGGCTTTTATGT 894
||||| |||||||| |||| ||||| | | ||||||||||||||||||||||||||
Sbjct 816 TTTCCGATGATGCGTCTTGGTTTTTTCTTTTTGACATTATAGACTTGTTGGCTTTTATGT 875
Query 895 AGAACCGGTTCAAAGTGTCAGCACAAAAAACAAAGATTATTGTATCTCATTTTTAAAAGC 954
|||||||||||| || ||||||||||||| ||||||| ||||||||||| | |||||||
Sbjct 876 AGAACCGGTTCA--GTTTCAGCACAAAAAAAAAAGATTGTTGTATCTCATCTCTAAAAGC 933
Query 955 ATTTGTCATTGTTTGACTAACGCCTGTCTTCTCT-AACCGTAAAACATGTGTTTCATTCA 1013
| | ||||||||||||| | ||||||||| ||| || ||||||||||||||||| ||||
Sbjct 934 AGTCGTCATTGTTTGACCAGCGCCTGTCTAGTCTTAATCGTAAAACATGTGTTTCCTTCA 993
Query 1014 ATGTTGAATGA 1024
|||||||||||
Sbjct 994 ATGTTGAATGA 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5