BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25560.1
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354228 jgi|Araly1|354228|fgenesh1_pg.C_scaffold_7001401 1151 0.0
Ahg495295 jgi|Araly1|495295|fgenesh2_kg.8__1111__AT5G52260.1 405 3e-112
> Ahg354228 jgi|Araly1|354228|fgenesh1_pg.C_scaffold_7001401
Length=789
Score = 1151 bits (623), Expect = 0.0
Identities = 737/792 (93%), Gaps = 7/792 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAAGACGAAATATGGAGAGAGACATAGGAAAGGGTTATGGTCACCTGAAGAAGAC 60
||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGCAAAGACGAAATCTGGAGAGAGACAGAGGAAAGGGTTATGGTCACCTGAAGAAGAT 60
Query 61 GAGAAGCTAAGGAGCTTCATCCTCTCTTATGGCCATTCTTGCTGGACCACTGTTCCCATC 120
||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GAGAAGCTAAGAAGCTTCAAACTCTCTCATGGCCATTCTTGCTGGACCACTGTTCCCATC 120
Query 121 AAAGCTGGGTTACAAAGGAATGGGAAGAGCTGCAGATTAAGATGGATTAATTACCTAAGA 180
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AAAGCTGGGTTGCAAAGGAATGGGAAAAGCTGCAGATTAAGATGGATTAATTACCTAAGA 180
Query 181 CCAGGGTTAAAGAGGGATATGATTAGTGCAGAAGAAGAAGAGACTATCTTGACGTTTCAT 240
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 181 CCAGGGTTAAAGAGGGATATGATTAGTGCAGAAGAAGAAGATACCATCTTGACGTTTCAT 240
Query 241 TCTTCCTTGGGTAACAAGTGGTCGCAAATAGCTAAA-TTCTTACCGGGAAGAACAGACAA 299
|||| ||||||||| |||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 241 TCTTTCTTGGGTAATAAGTGGTCGCAAATCGC-AAAGTTCTTACCGGGAAGAACAGACAA 299
Query 300 TGAGATAAAGAACTATTGGCACTCTCATTTGAAAAAGAAATGGCTCAAGTCTCAGAGCTT 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 300 TGAGATAAAGAACTATTGGCACTCTCATTTGAAAAAGAGATGGCTCAAGTCTCAGAGCTT 359
Query 360 ACAAGATGCAAAATCTATTTCCCCTCCTTCGTCTTCATCATCATCACTTGTTGCTTGTGG 419
|||| || |||||||| ||||| || ||| || ||||||||||||||||||||||||||
Sbjct 360 ACAACATCCAAAATCTGTTTCC--TC-TTCTTCATCATCATCATCACTTGTTGCTTGTGG 416
Query 420 AAAAAGAAATCCGGAAACCTTGATCTC-GAATCACGTGTTCTCCTTCCAGAGACTTCTAG 478
|||||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||
Sbjct 417 AAAAAGAAATCCGGAAACCTTGATCTGTGA-TCAGGTGATCTCCTTCCAGAGACTTCTAG 475
Query 479 AGAACAAATCTTCATCTCCCTCACAAGAAAGCAACGGAAATAACAGCCATCAATGTTCTT 538
|| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 476 AGGACAAATCTTCGTCTCCATCACAAGAAAGCAACGGAAATAACAGTTATCAATGTTCTT 535
Query 539 CTGCTCCTGAGATTCCAAGGCTTTTCTTCTCTGAATGGCTTTCTTCTTCATATCCCCACA 598
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 536 CTGCTCCTGAGATTCCAAGGCTTTTCTTCTCTGAATGGCTTTCTTCTTCGGATCCCCATA 595
Query 599 CCGATTATTCCTCTGAGTTTACCGACTCTAAGCACAGTCAAGCTCCAAATGTCGAAGAGA 658
||||||||||||||| |||| ||||||||||||| ||||||||||||||| |||| |
Sbjct 596 TCGATTATTCCTCTGATTTTATAGACTCTAAGCACAACCAAGCTCCAAATGTCAAAGAAA 655
Query 659 CTCTCTCAGCTTATGAAGAAATGGGTGATGTTGATCAGTTCCATTACAACGAAATGATGA 718
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 656 CTGTCTCAGCTTATGAAGAAATGGGTGATGTTGATCAGTTCCATTACACCGAAATGATGA 715
Query 719 TCAACAACAGCAACTGGACTCTTAACGACATTGTGTTTGGTTCCAAATGTAAGAAGCAGG 778
||||||||||||||||||||||||||||| | ||| |||||||||| ||||||| ||||
Sbjct 716 TCAACAACAGCAACTGGACTCTTAACGACGTCGTGCTTGGTTCCAAGTGTAAGACTCAGG 775
Query 779 AGCATCATATTT 790
||||||||||||
Sbjct 776 AGCATCATATTT 787
> Ahg495295 jgi|Araly1|495295|fgenesh2_kg.8__1111__AT5G52260.1
Length=870
Score = 405 bits (219), Expect = 3e-112
Identities = 499/629 (79%), Gaps = 40/629 (6%)
Strand=Plus/Plus
Query 23 AGAGACATAGGAAAGGGTTATGGTCACCTGAAGAAGACGAGAAGCT-AAGGAGCTTCATC 81
||||||| |||||||||||||||||||||||||||||| ||||||| ||| || ||||||
Sbjct 29 AGAGACAGAGGAAAGGGTTATGGTCACCTGAAGAAGACCAGAAGCTCAAG-AGTTTCATC 87
Query 82 CTCTCTTATGGCCATTCTTGCTGGACCACTGTTCCCATCAAAGCTGGGTTACAAAGGAAT 141
|||||| ||||||| ||||||||||||||||||||||| |||||| || |||||||||
Sbjct 88 CTCTCTCGTGGCCATGCTTGCTGGACCACTGTTCCCATCCTAGCTGGATTGCAAAGGAAT 147
Query 142 GGGAAGAGCTGCAGATTAAGATGGATTAATTACCTAAGACCAGGGTTAAAGAG-GGATAT 200
||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| || |
Sbjct 148 GGGAAAAGCTGCAGATTAAGGTGGATTAATTACCTAAGGCCAGGATTAAAGAGAGGG-AC 206
Query 201 GATTAGTGCAGAAGAAGAAGAGACTATCTTGACGTTT-CATTCTTCCTTGGGTAACAAGT 259
| |||||| ||||||||||||||| |||||||| ||| ||| ||||||||||||||||||
Sbjct 207 GTTTAGTGAAGAAGAAGAAGAGACCATCTTGAC-TTTACATGCTTCCTTGGGTAACAAGT 265
Query 260 GGTCGCAAATAGCTAAATTCTTACCGGGAAGAACAGACAATGAGATAAAGAACTATTGGC 319
|||||| || || |||| | |||| |||||||||||||| ||||| |||||||| ||||
Sbjct 266 GGTCGCGGATTGCAAAATACCTACCTGGAAGAACAGACAACGAGATTAAGAACTACTGGC 325
Query 320 ACTCTCATTTGAAAAAGAAATGGCTCAAGTCTCAGAGCTTACAAGATGCAAAATCTATT- 378
||||| || |||| |||| ||||||||| ||||| | | ||| | | ||||| | |
Sbjct 326 ACTCTTATCTGAAGAAGAGATGGCTCAAATCTCA-ACC--ACA-GCT-CAAAACCCAAAG 380
Query 379 -TCC--CCTC-CTT-CGTCTTCATCAT-CATCACTTGTTGCTTGTGGAAAAAGAAATCCG 432
|| |||| | | ||||| || | | ||||| || |||| || ||||||||||||
Sbjct 381 ATCAGACCTCACAGAC-TCTTC-TCCTTCTTCACTACTTTCTTGCGGGAAAAGAAATCCG 438
Query 433 GAAACCTTGATC-TCGAATCACGTGTTCTCCTTCCAGAGACTT-CTAGAGAA-CAAATCT 489
|||||| | | | || ||||||| |||||||||||| | || | |||||| | || ||
Sbjct 439 GAAACCGAAACCCTAGA-TCACGTGATCTCCTTCCAGAAATTTGC-AGAGAAGCCAA-CT 495
Query 490 TCATCTCCCTCACAA-GAAAGCAACGGAAATAACA-GCCATCAATGTTCTTCTGCTCCTG 547
||||| || || ||| || ||||| || |||| | |||| || | | | | |
Sbjct 496 TCATCACCATC-CAAAGACAGCAAT--AAC-AACATG--ATCA-TGAACAACAG-TAATA 547
Query 548 AGATT-CC-AAGGCTTTTCTTCTCTGAATGGCTTTCTTCTTCATATCCCCACACCGATTA 605
| || || || || |||||||| || ||| | ||||||| |||| |||| ||||||
Sbjct 548 AC-TTACCTAAA-CTGTTCTTCTCCGAGTGGATCAGTTCTTCAAATCCACACATCGATTA 605
Query 606 TTCCTCTGAGTTTACCGACTCTAAGCACA 634
||||||| ||||| || ||||||||||
Sbjct 606 CTCCTCTGCTTTTACAGATTCTAAGCACA 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33243183624
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5