BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25570.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329112 jgi|Araly1|329112|fgenesh1_pm.C_scaffold_7001339 739 0.0
Ahg918995 jgi|Araly1|918995|scaffold_100276.1 121 1e-26
> Ahg329112 jgi|Araly1|329112|fgenesh1_pm.C_scaffold_7001339
Length=735
Score = 739 bits (400), Expect = 0.0
Identities = 450/474 (95%), Gaps = 4/474 (1%)
Strand=Plus/Plus
Query 299 CCATCATAAGTTACAAATCGCTTCCGCTGGAGAAACCAGTGAAGAAGTTGATCCACCTTA 358
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 225 CCATTATAAGTTACAAATCGCTTCCGTTGGAGAAACCAGTGAAGAAGTTGATCCACCTTA 284
Query 359 TACTCCATGCCATTGCTCTGGCTCTTGGGATATTTGGCATCTGTGCAGCCTTTAAGAACC 418
||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 285 TACTCCA-GCCATTGCTCTGGCTCTTGGGATCTTCGGCATCTGTGCAGCCTTCAAGAACC 343
Query 419 ACAATGAAAGC-CATATCCCTAATCTCTACAGTCTCCATTCCTGGATTGGTATTGGAGTC 477
||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 344 ACAATGAAAGCGGA-ATCCCTAATCTCTACAGTCTCCATTCTTGGATTGGTATTGGAGTC 402
Query 478 ATTTCTCTTTATGGCTTCCAGTGGGTGTACAGCTTCATAGTGTTCTTCTTCCCAGGAGGA 537
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 ATTTCCCTTTATGGCTTCCAGTGGGTGTACAGCTTCATAGTGTTCTTCTTCCCAGGAGGA 462
Query 538 TCAACAAATTTGAAAAGCGGATTGCTTCCGTGGCACGCAATGCTTGGCCTGTTTGTTTAC 597
||||||||| ||| ||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 463 TCAACAAATCTGAGAAGCGGATTGCTTCCGTGGCATGCAATGCTCGGCCTATTTGTTTAC 522
Query 598 ATACTTGCTGTCGGGAATGCAGCTTTAGGGTTTCTGGAAAAGCTGACTTTCTTGGAGAAT 657
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 523 ATACTTGCTGTTGGGAATGCAGCTTTAGGGTTTCTGGAAAAGCTGACTTTCTTGGAAAAT 582
Query 658 GGAGGGCTTGACAAGTATGGATCCGAAGCATTTCTTATCAACTTCACGGCCATTATCACT 717
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 583 GGAGGGCTTGACAAGTATGGATCCGAGGCATTTCTTATCAACTTCACGGCCATTATCACT 642
Query 718 ATTCTCTTTGGTGCCTTTGTGGTACTCACTGCTTCTGCTGAGTCTCCTTC-TCC 770
|||||||||| | |||||||||||||||||||||||||| ||||||| || |||
Sbjct 643 ATTCTCTTTGCTACCTTTGTGGTACTCACTGCTTCTGCTAAGTCTCCCTCCTCC 696
Score = 318 bits (172), Expect = 4e-86
Identities = 186/193 (96%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 106 ATGGCTGTCCGGATAAACGCGATGGCGGTGACGTTTGTGGCGCACGCGCTGGCGGTAATA 165
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGTCGGGATAAACGCGCTGGCGGTGACGTTTGTGGCGCACGCGCTGGCGGTAATC 60
Query 166 GCGGCGATTATGGTACTGGTTTGGAGTATCAGTTACAGAGGTGGATTGGCCTGGGAAGCT 225
|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GCAGCGATTATGGTGCTGGTTTGGAGTATCAGTTACAGAGGTGGATTGGCTTGGGAAGCT 120
Query 226 ACTAACAAGAATCTCATCTTCAATCTGCATCCTGTTCTGATGCTCATCGGATTTATAATC 285
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTAACAAAAATCTCATCTTCAATCTGCATCCTGTTCTGATGCTCATCGGATTTATAATC 180
Query 286 TTGGGAGGAGAAG 298
|||||||||||||
Sbjct 181 TTGGGAGGAGAAG 193
> Ahg918995 jgi|Araly1|918995|scaffold_100276.1
Length=491
Score = 121 bits (65), Expect = 1e-26
Identities = 78/84 (93%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 695 TCAACTTCACGGCCATTATCACTATTCTCTTTGGTGCCTTTGTGGTACTCACTGCTTCTG 754
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 408 TCAACTTCACGGCCATTATCACTATTCTCTTTGGTACCTTTGTGGTACTCACTGCTTCTG 467
Query 755 CTGAGTCTCCTTC-T-CCTTCTCC 776
|| ||||| |||| | ||| ||||
Sbjct 468 CTAAGTCTTCTTCCTTCCTCCTCC 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5