BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25580.1
Length=2162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492269 jgi|Araly1|492269|fgenesh2_kg.7__1702__AT4G25580.1 1308 0.0
Ahg949787 jgi|Araly1|949787|scaffold_801674.1 52.8 1e-05
> Ahg492269 jgi|Araly1|492269|fgenesh2_kg.7__1702__AT4G25580.1
Length=2012
Score = 1308 bits (708), Expect = 0.0
Identities = 895/983 (91%), Gaps = 21/983 (2%)
Strand=Plus/Plus
Query 1065 GGGAGAAAAGTCATGGTTTTGATACTAAGTCAAGACCTGAAATGGGCAAGCACATACCGG 1124
|||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 985 GGGAGAAAAGTCGTGGTTTTGATACTAAATCAAGACCTGAAATGGGCAAGCACTTACCGG 1044
Query 1125 CGGGAGACTATGGATCTAGATTGGGGAAAGAATCTCCGGAGCGGAGTGATGAATTTGATC 1184
||||||||||||||||||| ||||| ||||||||||||||| ||||| | |||||||||
Sbjct 1045 CGGGAGACTATGGATCTAGTTTGGGAAAAGAATCTCCGGAGAGGAGTCAAGAATTTGATT 1104
Query 1185 TGGGAAAAGATTTGCCGACGAGAACTCAAGGTATACAAAACCCT-CAGGGTTTTGATTCC 1243
||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||
Sbjct 1105 TGGGAAAAGATTTGCTAACGAGAACTCAAGGTATACAAAAGCCTGC-TGGTTTTGATTCG 1163
Query 1244 AGAGGTCA-GAGGAGAGGAGAGGAGATGCACCAGCCTAATCAGAGCAGCTACACCGATAA 1302
| |||||| || ||||||||| || ||||| ||||| ||||||||||||||||| |||||
Sbjct 1164 AAAGGTCAGGA-GAGAGGAGATGAAATGCAGCAGCCGAATCAGAGCAGCTACACTGATAA 1222
Query 1303 GATCTCATTAGCGACTTCGGTCGTAGCAGACAAAGCTGTGGCGGCGAAAAACGCCGTCGC 1362
|||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1223 GATCGCATTAGCGACTTCGGTCGTAGCTGACAAAGCTGTGGCAGCGAAGAACGCCGTCGC 1282
Query 1363 TTCGAAGTTAGGTTACTCCGGGGAAGGCGGCCACGAGAATCGTGTGGAAGGAGCAGAAAA 1422
||||||| | |||||||| ||||||| |||||||||||||||||| |||||||||||||
Sbjct 1283 TTCGAAGCTCGGTTACTCTGGGGAAGCCGGCCACGAGAATCGTGTAGAAGGAGCAGAAAC 1342
Query 1423 TCCTAGCTCCGCTGGTGGATACGGAAGTACGGTCGCAAGTATGGTGACTCCAGTTTACGA 1482
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct 1343 TCCTAGCTCCGCTGGTGGATACGGGAGTACGGTCGCAGGTATGGTGACTCCAGTTTATGA 1402
Query 1483 GAAGGTTAAAGAGACAGGAGCTAGTGTAATGACGAAGTTACCATTCACCGGGACCGGGAC 1542
|||||||||||| ||||||||||||||||||||||| || |||||| ||||||| |||||
Sbjct 1403 GAAGGTTAAAGAAACAGGAGCTAGTGTAATGACGAAATTGCCATTCTCCGGGACAGGGAC 1462
Query 1543 AGAGCAAGGACAAGACAGGGGCGTCTCGGCGAAAGAAT-TCCTTACGGAGAAACTGAGTC 1601
||||||||||||||||| ||||||||| || ||||||| | |||||||||||||||||||
Sbjct 1463 AGAGCAAGGACAAGACAAGGGCGTCTCTGCTAAAGAATAT-CTTACGGAGAAACTGAGTC 1521
Query 1602 CGGGAGAGGAAGACAAGGCTTTGTCGGAAGTGGTCACTGAGAAGCTTCATCTTGGAGGAG 1661
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1522 CGGGAGAGGAAGACAAGGCTTTGTCGGAAGTGGTCGCTGAGAAGCTTCATCTTGGAGGAG 1581
Query 1662 GCGGTGGCGAAACTGCGCCACCGAAGAGAGGGATAGTGACACAATCGGAGGAGGTGGAGA 1721
|||||||||| | || | |||| | || ||||||||||||||||||||||||||||
Sbjct 1582 GCGGTGGCGAG-C--CGA-A--GAAG-G-GG-ATAGTGACACAATCGGAGGAGGTGGAGA 1632
Query 1722 AAAGGTTAGGAGGGTTTAAGGATCCGAGCTCGGAAGCAGCTACGAAACAGGGTGAAGCA- 1780
||||| ||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 1633 AAAGGCTAGGACGGTTTAAGGATCCGAGCTCGGAAGCAGCTACAAAACACGGTGAAG-AG 1691
Query 1781 TATGCGGAGAAAGGCGAAGGAGGGATTGCGGAGAAGCTGAGAGGAGCTGTTACTTCTTGG 1840
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1692 TATGCGGAGGAAGGCGAAGGAGGGATGGCGGAGAAGCTGAGAGGAGCTGTTACTTCGTGG 1751
Query 1841 ATCGCTGGTACGACGGAAGAAGTGACGCAAAAGTCTACAGAATCTGTTCAAGACTCTACA 1900
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1752 CTTGCTGGTACGACGGAAGAAGTAACGCAAAAGTCTACAGAATCTGTTCAAGACTCTACA 1811
Query 1901 CAGTCACTTGGCTCCACCATTGGGAATAAAATGGGAATTACGGGTTCGGGAGGAGGTGAG 1960
|||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||
Sbjct 1812 CAGTCACTTGGCTCCACCGTTGGGAATAAAATGGGAATTTCTGGTTCGGGAGGAGATGAA 1871
Query 1961 GCAGGCCAACAA-GGTTCTATGCCTTTGCAAAAGAGATTTCAAGAATCTGGAAACTGAGA 2019
|||||| || |||||| |||||||||| | ||||||||||||||||||||| ||||
Sbjct 1872 GCAGGC-AATGGTGGTTCTGTGCCTTTGCAGAGGAGATTTCAAGAATCTGGAAAGTGAGC 1930
Query 2020 TTCTGCTTCTTCTTTTTAAATGT 2042
|| |||||||||||||||| |||
Sbjct 1931 TT-TGCTTCTTCTTTTTAA-TGT 1951
Score = 1074 bits (581), Expect = 0.0
Identities = 773/866 (89%), Gaps = 12/866 (1%)
Strand=Plus/Plus
Query 1 GTTCGGCTATGCGTCTTCCTCCTCTTTCCCATACTCTCTGACTCTGTATAAAACTTTGAA 60
|||||||||||||||||||||||||||| | |||||| | |||||||||||| |||| ||
Sbjct 1 GTTCGGCTATGCGTCTTCCTCCTCTTTCTC-TACTCTTTAACTCTGTATAAAGCTTTCAA 59
Query 61 GAAGCTCCTCATATTTTCTCAGAAACAATTTGGA-TGCATAGAAAGGAAAAGAACAAAAT 119
|||||||||| |||| ||||| |||||||| || |||| ||||||||||||| |||||
Sbjct 60 GAAGCTCCTCGGATTTACTCAG-AACAATTT-GATTGCAGAGAAAGGAAAAGAGCAAAAC 117
Query 120 CAAA-TCTAGCAAATAAAATGGATTCACAAGCGCAGTTGCAACGTACTCATGGTCATCAC 178
|||| | ||||||||| |||||||| |||||||||||||||||| ||||||||||||||
Sbjct 118 CAAAGT-TAGCAAATATTATGGATTCGCAAGCGCAGTTGCAACGTCCTCATGGTCATCAC 176
Query 179 CAAGCACAGGAGCCAATAAGGATTCACCATCCAGAGGAAGAAGGGCATCATgaaaaagga 238
|||||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 177 CAAGCAGAGGAACCAATTAGGATTCACCATCCAGAGGAAGAAGGGCATCATGAGAAAGGA 236
Query 239 ccatcaaaagttctgaagaaagtgaaggaaaaagcaaagaagatcaagaaTGTTCTTACT 298
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 237 CCATCAAAAGTTCTGAAGAAAGTGAAGGAAAAAGCAAAGAAGATCAAGAACGTTCTTACT 296
Query 299 AAACATGGACATGGTCATGAGCACGATCGTGGAGAACACATCCCTGACGATCACGATCTA 358
||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||
Sbjct 297 AAACATGGACATGGTCATGAGCACGGTCGTGGAGAACACATCCCCGATGATCACGATCTC 356
Query 359 GACCAAGAAGACGATGAAGATGACTAC-AACGACAACCAACTCCACGGCGGTGCACCAGC 417
||||||||||||||||||||||||||| || | |||| |||||||||| |||||||||||
Sbjct 357 GACCAAGAAGACGATGAAGATGACTACCAAGGCCAAC-AACTCCACGGGGGTGCACCAGC 415
Query 418 ACGAGGAAAAGCTCATATTCCGGTGAAGGAGGAGATAGTCCCTCCAGG-ATCGAAAGCTT 476
||||||||||||||| | |||||||||||| || |||||||||||||| | ||||||| |
Sbjct 416 ACGAGGAAAAGCTCACAATCCGGTGAAGGAAGAAATAGTCCCTCCAGGCA-CGAAAGCAT 474
Query 477 TTCCAGTTGTTTCCTCTTCACATACAAAACCCTCTGAGCCAGTGAGAGGAGTTGGCCACG 536
|||| ||||| || ||||||||||| |||| |||||||||| | |||||||||||||| |
Sbjct 475 TTCCGGTTGTGTCTTCTTCACATACGAAACACTCTGAGCCAATCAGAGGAGTTGGCCAGG 534
Query 537 AAGCAATGTCTCGTCCTATAAAACACTCCGGTGTACCGGAGAAAGAAGAGAGAAGAGGGG 596
||||| | |||| |||| | | || ||||||||| || || |||||||| ||||||||||
Sbjct 535 AAGCAGTTTCTCATCCTGTTAGACCCTCCGGTGTTCCTGATAAAGAAGAAAGAAGAGGGG 594
Query 597 CTCCTACACTGACGCCGCATAACACTCCCGTGTCTTTACTATCTGCAACAGAAGATGTGA 656
|| ||||| |||| || |||||||| |||||||| ||||| ||||| || |||||||| |
Sbjct 595 CTGCTACATTGACACCACATAACACCCCCGTGTCATTACTCTCTGCGACCGAAGATGTCA 654
Query 657 CAAGAACATTTGTTCCTGATGAACACAAGTCTCGAAACCAAAGTAAAGTTAATATCGACA 716
| |||||||||||||||| |||| |||||||| || ||||| |||| || ||||| || |
Sbjct 655 CGAGAACATTTGTTCCTGGTGAAGACAAGTCTAGAGACCAACGTAAGGTCAATATGGAGA 714
Query 717 GACCCAAAGGATTGGACCAAGATCCAGCTGCTCCGGGATCTCATGGTG-GGTTGTCAAAT 775
|||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||||||
Sbjct 715 GACCCAGAGGATTGGAGCAAGATCCAGCTGCTCCGGGATCTCATGGTCAGGT-GTCAAAT 773
Query 776 TATCAGTCCAAAGTTACTGACCCCATCGGAAAATCTACTGGAGAAATTGGAGCAGCATCG 835
| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 774 GACCAGTCCAAAGTTACTGATCCCATCGGAAAATCTACTGGAAAAATTGGAGCAGCAACG 833
Query 836 ACTGTCTCAGCTATTGGAAGGTTAGG 861
|||||||||||| ||||||| |||||
Sbjct 834 ACTGTCTCAGCTCTTGGAAGATTAGG 859
> Ahg949787 jgi|Araly1|949787|scaffold_801674.1
Length=2370
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 943 TTATCAGTCCAAAGTTACTGATCCCACC 970
||||||||||||||||||||||||||||
Sbjct 657 TTATCAGTCCAAAGTTACTGATCCCACC 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81360763320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5