BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25590.1 Length=672 Score E Sequences producing significant alignments: (Bits) Value Ahg492268 jgi|Araly1|492268|fgenesh2_kg.7__1701__AT4G25590.1 974 0.0 > Ahg492268 jgi|Araly1|492268|fgenesh2_kg.7__1701__AT4G25590.1 Length=655 Score = 974 bits (527), Expect = 0.0 Identities = 626/671 (93%), Gaps = 18/671 (3%) Strand=Plus/Plus Query 3 AACAACAAATCTTTCGATCTTCCTCAAGTCTTATCATAGAACCTAGACAAAAGCAATGGC 62 ||||||||||||| | ||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1 AACAACAAATCTTGCCATCTTCCTCAAGTCTTATCATAGAAACTAGACAAAAGCCATGGC 60 Query 63 GAACGCGGCGTCGGGGATGGCAGTGGAGGACGAGTGCAAGCTGAAGTTTTTGGAGCTCAA 122 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || Sbjct 61 TAACGCGGCGTCGGGGATGGCTGTGGAGGACGAATGCAAGCTGAAGTTTTTGGAGCTAAA 120 Query 123 GTCGAAAAGAAACTATCGATTCATAATATTCAGGATAGACGGGCAACAAGTGGTGGTCGA 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTCGAAAAGAAACTATCGATTCATAATATTCAGGATAGACGGGCAACAAGTGGTGGTCGA 180 Query 183 AAAGTTAGGAAACCCCGATGAGACTTAC-GATGATTTCACCGCCTCCCTCCCTGCGAACG 241 ||||||||||||||| || ||||||||| || |||||||| ||||||||||||||||||| Sbjct 181 AAAGTTAGGAAACCCGGAAGAGACTTACGGA-GATTTCACAGCCTCCCTCCCTGCGAACG 239 Query 242 AGTGCCGCTATGCAGTCTTCGACTTTGACTTCATCACCGATGAAAATTGCCAGAAGAGCA 301 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 240 AGTGCCGCTATGCAGTCTTCGATTTTGACTTCATCACCGATGAAAATTGCCAGAAGAGCA 299 Query 302 AAATCTTCTTCATTGCATGGTCACCAGATTCATCAAGGGTGAGGATGAAGATGGTGTATG 361 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AAATCTTCTTCATCGCATGGTCACCAGATTCATCAAGGGTGAGGATGAAGATGGTGTATG 359 Query 362 CAAGCTCTAAGGATAGATTTAAGAGAGAATTGGACGGCATTCAGGTGGAGTTACAAGCCA 421 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 360 CAAGCTCTAAGGATAGATTCAAGAGAGAATTGGATGGCATTCAGGTGGAGTTACAAGCCA 419 Query 422 CTGATCCTAGCGAGATGAGCTTCGACATTATCAAAAGCCGAGCTCTCTAGATCCTTTTCA 481 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 420 CTGATCCTAGCGAGATGAGCTTCGACATTATCAAAAGCCGAGCTCTCTAGATCATTTTCA 479 Query 482 ACGATCTATATCTCTATCATCGATCCTGATCTTCACaa-aaaaaaTTACCATGTCATCTG 540 |||||||||||||||||||||||||||||||||||| ||||||||||||||| || | Sbjct 480 ACGATCTATATCTCTATCATCGATCCTGATCTTCACCCCAAAAAATTACCATGTTAT-T- 537 Query 541 GTTGAAAACTGAATTCTTTATCTGTCTTATTCATTTTATAAACATTCTTTTCTTTCTACT 600 | | | || || ||||||||||||||||||||||| |||||||||| || ||| Sbjct 538 -T-G------G--TT-TT-ATCTGTCTTATTCATTTTATAAAAATTCTTTTCTATCCACT 585 Query 601 TCCGTTTGGGAGAGAAGTTCAAACCTTGTAGCTTTGTTGTGTAACTCTCAAATAAACGAA 660 ||||||||| || || ||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct 586 TCCGTTTGGAAGGGAGGTTGAAACCATGTAGCTT-GTTGTGTAACTCTCAAATAAACGAA 644 Query 661 TAATATTTCCT 671 ||||||||||| Sbjct 645 TAATATTTCCT 655 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24665527299 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5