BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25590.1
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492268 jgi|Araly1|492268|fgenesh2_kg.7__1701__AT4G25590.1 974 0.0
> Ahg492268 jgi|Araly1|492268|fgenesh2_kg.7__1701__AT4G25590.1
Length=655
Score = 974 bits (527), Expect = 0.0
Identities = 626/671 (93%), Gaps = 18/671 (3%)
Strand=Plus/Plus
Query 3 AACAACAAATCTTTCGATCTTCCTCAAGTCTTATCATAGAACCTAGACAAAAGCAATGGC 62
||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1 AACAACAAATCTTGCCATCTTCCTCAAGTCTTATCATAGAAACTAGACAAAAGCCATGGC 60
Query 63 GAACGCGGCGTCGGGGATGGCAGTGGAGGACGAGTGCAAGCTGAAGTTTTTGGAGCTCAA 122
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 61 TAACGCGGCGTCGGGGATGGCTGTGGAGGACGAATGCAAGCTGAAGTTTTTGGAGCTAAA 120
Query 123 GTCGAAAAGAAACTATCGATTCATAATATTCAGGATAGACGGGCAACAAGTGGTGGTCGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCGAAAAGAAACTATCGATTCATAATATTCAGGATAGACGGGCAACAAGTGGTGGTCGA 180
Query 183 AAAGTTAGGAAACCCCGATGAGACTTAC-GATGATTTCACCGCCTCCCTCCCTGCGAACG 241
||||||||||||||| || ||||||||| || |||||||| |||||||||||||||||||
Sbjct 181 AAAGTTAGGAAACCCGGAAGAGACTTACGGA-GATTTCACAGCCTCCCTCCCTGCGAACG 239
Query 242 AGTGCCGCTATGCAGTCTTCGACTTTGACTTCATCACCGATGAAAATTGCCAGAAGAGCA 301
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 AGTGCCGCTATGCAGTCTTCGATTTTGACTTCATCACCGATGAAAATTGCCAGAAGAGCA 299
Query 302 AAATCTTCTTCATTGCATGGTCACCAGATTCATCAAGGGTGAGGATGAAGATGGTGTATG 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAATCTTCTTCATCGCATGGTCACCAGATTCATCAAGGGTGAGGATGAAGATGGTGTATG 359
Query 362 CAAGCTCTAAGGATAGATTTAAGAGAGAATTGGACGGCATTCAGGTGGAGTTACAAGCCA 421
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 360 CAAGCTCTAAGGATAGATTCAAGAGAGAATTGGATGGCATTCAGGTGGAGTTACAAGCCA 419
Query 422 CTGATCCTAGCGAGATGAGCTTCGACATTATCAAAAGCCGAGCTCTCTAGATCCTTTTCA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 CTGATCCTAGCGAGATGAGCTTCGACATTATCAAAAGCCGAGCTCTCTAGATCATTTTCA 479
Query 482 ACGATCTATATCTCTATCATCGATCCTGATCTTCACaa-aaaaaaTTACCATGTCATCTG 540
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct 480 ACGATCTATATCTCTATCATCGATCCTGATCTTCACCCCAAAAAATTACCATGTTAT-T- 537
Query 541 GTTGAAAACTGAATTCTTTATCTGTCTTATTCATTTTATAAACATTCTTTTCTTTCTACT 600
| | | || || ||||||||||||||||||||||| |||||||||| || |||
Sbjct 538 -T-G------G--TT-TT-ATCTGTCTTATTCATTTTATAAAAATTCTTTTCTATCCACT 585
Query 601 TCCGTTTGGGAGAGAAGTTCAAACCTTGTAGCTTTGTTGTGTAACTCTCAAATAAACGAA 660
||||||||| || || ||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 586 TCCGTTTGGAAGGGAGGTTGAAACCATGTAGCTT-GTTGTGTAACTCTCAAATAAACGAA 644
Query 661 TAATATTTCCT 671
|||||||||||
Sbjct 645 TAATATTTCCT 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24665527299
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5