BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25600.1 Length=1165 Score E Sequences producing significant alignments: (Bits) Value Ahg492267 jgi|Araly1|492267|fgenesh2_kg.7__1700__AT4G25600.1 1483 0.0 > Ahg492267 jgi|Araly1|492267|fgenesh2_kg.7__1700__AT4G25600.1 Length=1111 Score = 1483 bits (803), Expect = 0.0 Identities = 1045/1154 (91%), Gaps = 47/1154 (4%) Strand=Plus/Plus Query 7 GTTCCTCGTTTCAGCGATGTAGCAGTAGTACCCAGTGGAGTGGAGCAATGGCTTGCCTTA 66 |||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||| Sbjct 1 GTTCCTCGTTTCAGCGATGTAGCATTAGTA-CCAGT---GTGGAGCAATGGCTGGCCTTA 56 Query 67 GCCG-AATCTTCCTTATTCTGATGATTACTATGTCTTCTTCGTCTCCTCCTTTCTGTTCC 125 | || || |||||| ||||||||||||| ||||| |||||||||| |||||||||||||| Sbjct 57 G-CGAAACCTTCCTAATTCTGATGATTATTATGTTTTCTTCGTCTTCTCCTTTCTGTTCC 115 Query 126 GGTGGAAGTCGGAAGGAGCTCCGAGATAAAGAAATTACGAGTAAGAGTGATGATACACAG 185 ||||||||||||||||||||||| |||||||||| || | |||||| | ||||||||| Sbjct 116 GGTGGAAGTCGGAAGGAGCTCCGGGATAAAGAAAATATGGGTAAGA--G-TGATACACAA 172 Query 186 GCGAGTTATGTTTTAGGATCTAAATTTGTGGACCCGACACGTGTTCTTCAACTTTCATGG 245 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 173 GCGAGTTATGTTTTAGGATCTAAATTTGTGGACCCGAGACGTGTTCTTCAGCTTTCATGG 232 Query 246 CTACCAAGGGTCTTTCTATACCGCGGGTTCTTGTCGGAGGAAGAGTGTGATCATCTGATA 305 | |||||||||||| || |||||||||||||||||||||||||||| ||||||||||| | Sbjct 233 CAACCAAGGGTCTTCCTTTACCGCGGGTTCTTGTCGGAGGAAGAGTCTGATCATCTGACA 292 Query 306 TCTCTGAGAAAGGAGACTACAGAGGTTTA-CTCAGTGGATGCTGATGGAAAGACGCAACT 364 |||||||||||||| | | |||||| | | ||||| |||||||||||||||| ||||||| Sbjct 293 TCTCTGAGAAAGGATATTTCAGAGG-TAACCTCAGGGGATGCTGATGGAAAGGCGCAACT 351 Query 365 TGATCCAGTAGTTGCTGGGATTGAAGAAAAAGTTTCTGCGTGGACTTTCCTCCCAGGAGA 424 ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| Sbjct 352 TGATCCAGTAGTTGCTGGGATTGAAGAAAAAATATCTGCGTGGACTTTCCTCCCAAGAGA 411 Query 425 AAATGGCGGCTCTATCAAGGTAAGAAGTTACACTTCTGAGAAGTCAGGAAAGAAGTTGGA 484 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 AAATGGTGGCTCTATCAAGGTAAGAAGTTACACTTCTGAGAAGTCAGGAAAGAAGTTGGA 471 Query 485 TTATTTTGGAGAGGAACCTAGCTCCGTATTGCATGAATCTTTGCTGGCAACCGTCGTTCT 544 |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 472 TTATTTTGGAGAGGAACCTAGCTCTGTATCGCATGAATCTTTGCTGGCAACCGTCGTTCT 531 Query 545 CTACCTCTCAAACACAACTCAAGGAGGAGAGCTTCTCTTCCCAAATTCAGAGATGAAACC 604 |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 532 CTACCTCTCAAACACAACTCAAGGAGGAGAACTTCTCTTCCCAAATTCAGAGGTGAAACC 591 Query 605 CAAAAACAGTTGCTTGGAGGGCGGTAACATTTTAAGACCAGTAAAAGGAAACGCAATTCT 664 |||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |||| Sbjct 592 CAAAAAGAGTTGCTCAGAGGGCGGTAACATTTTAAGACCAGTGAAAGGAAACGCAGTTCT 651 Query 665 GTTCTTCACCAGGCTCTTGAATGCATCTTTGGATGGGAAAAGCACTCATTTGAGGTGCCC 724 |||||||| ||| | |||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 652 GTTCTTCAGCAGACACTTGAATGCATCTTTGGATGAGACAAGCACTCATTTGAGATGCCC 711 Query 725 TGTGGTGAAAGGAGAACTGTTAGTGGCAACAAAACTGATCTATGCGAAGAAACAAGCAAG 784 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 TGTGGTAAAAGGAGAACTGTTAGTGGCAACAAAACTGATCTATGCGAAGAAACAAGCAAG 771 Query 785 AATTGAGGAGAGTGGGGAATGCAGTGATGAAGACGAAAACTGTGGACGATGGGCTAAGCT 844 || ||||||||||||||||||| |||||||||| |||||||||| |||||||||||| || Sbjct 772 AAATGAGGAGAGTGGGGAATGCGGTGATGAAGATGAAAACTGTGAACGATGGGCTAACCT 831 Query 845 TGGGGAGTGCAAGAAAAACCCTGTCTATATGATTGGCTCTCCTGATTACTACGGTACCTG 904 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 TGGTGAGTGCAAGAAAAACCCTGTCTATATGATTGGCTCTCCTGATTACTACGGTACCTG 891 Query 905 CAGAAAGAGTTGTAACGCTTGTTGATTCTTCAATCTTATCGCAAATAATTGAACATTTTC 964 |||||| ||||||||||||||||||||||||||||||| | | | | | Sbjct 892 CAGAAAAAGTTGTAACGCTTGTTGATTCTTCAATCTTA--G----T----GCA-A----- 935 Query 965 ATACTCAAGTACTTGAGCTGTTTTTGGTCTATAAGATAGAATAAA-TAGTGAATAGTTAA 1023 ||||| || |||||||||||||||||| ||||||||||| | |||||||||| Sbjct 936 ATACT----TA----AGCTGTTTTTGGTCTATATGATAGAATAAAAT-GTGAATAGTT-- 984 Query 1024 GGGTCGTGGTGGTAATTAATTCCTC-TTGGCCATAGGAGAAAAGAATATACTCACTTAGA 1082 | || | ||||||||| |||||| ||| |||||||| ||| ||||||||||||||||| Sbjct 985 G--TCTTTGTGGTAATTGATTCCTTATTGACCATAGGATAAAGGAATATACTCACTTAGA 1042 Query 1083 TCTTCTTTGATATAACTAGAAGTCTTTGTCTATGTTGTTATCTATGTTTCTCTCGAATCA 1142 ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| Sbjct 1043 TCTTCTTTGATATAACTAGAAGTCTTTTTCTATGTT---ATCTATGTTTCTCT--AATCA 1097 Query 1143 TAAATTTGCATCTT 1156 |||||||||||||| Sbjct 1098 TAAATTTGCATCTT 1111 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43460125380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5