BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25600.1
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492267 jgi|Araly1|492267|fgenesh2_kg.7__1700__AT4G25600.1 1483 0.0
> Ahg492267 jgi|Araly1|492267|fgenesh2_kg.7__1700__AT4G25600.1
Length=1111
Score = 1483 bits (803), Expect = 0.0
Identities = 1045/1154 (91%), Gaps = 47/1154 (4%)
Strand=Plus/Plus
Query 7 GTTCCTCGTTTCAGCGATGTAGCAGTAGTACCCAGTGGAGTGGAGCAATGGCTTGCCTTA 66
|||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct 1 GTTCCTCGTTTCAGCGATGTAGCATTAGTA-CCAGT---GTGGAGCAATGGCTGGCCTTA 56
Query 67 GCCG-AATCTTCCTTATTCTGATGATTACTATGTCTTCTTCGTCTCCTCCTTTCTGTTCC 125
| || || |||||| ||||||||||||| ||||| |||||||||| ||||||||||||||
Sbjct 57 G-CGAAACCTTCCTAATTCTGATGATTATTATGTTTTCTTCGTCTTCTCCTTTCTGTTCC 115
Query 126 GGTGGAAGTCGGAAGGAGCTCCGAGATAAAGAAATTACGAGTAAGAGTGATGATACACAG 185
||||||||||||||||||||||| |||||||||| || | |||||| | |||||||||
Sbjct 116 GGTGGAAGTCGGAAGGAGCTCCGGGATAAAGAAAATATGGGTAAGA--G-TGATACACAA 172
Query 186 GCGAGTTATGTTTTAGGATCTAAATTTGTGGACCCGACACGTGTTCTTCAACTTTCATGG 245
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 173 GCGAGTTATGTTTTAGGATCTAAATTTGTGGACCCGAGACGTGTTCTTCAGCTTTCATGG 232
Query 246 CTACCAAGGGTCTTTCTATACCGCGGGTTCTTGTCGGAGGAAGAGTGTGATCATCTGATA 305
| |||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 233 CAACCAAGGGTCTTCCTTTACCGCGGGTTCTTGTCGGAGGAAGAGTCTGATCATCTGACA 292
Query 306 TCTCTGAGAAAGGAGACTACAGAGGTTTA-CTCAGTGGATGCTGATGGAAAGACGCAACT 364
|||||||||||||| | | |||||| | | ||||| |||||||||||||||| |||||||
Sbjct 293 TCTCTGAGAAAGGATATTTCAGAGG-TAACCTCAGGGGATGCTGATGGAAAGGCGCAACT 351
Query 365 TGATCCAGTAGTTGCTGGGATTGAAGAAAAAGTTTCTGCGTGGACTTTCCTCCCAGGAGA 424
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 352 TGATCCAGTAGTTGCTGGGATTGAAGAAAAAATATCTGCGTGGACTTTCCTCCCAAGAGA 411
Query 425 AAATGGCGGCTCTATCAAGGTAAGAAGTTACACTTCTGAGAAGTCAGGAAAGAAGTTGGA 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AAATGGTGGCTCTATCAAGGTAAGAAGTTACACTTCTGAGAAGTCAGGAAAGAAGTTGGA 471
Query 485 TTATTTTGGAGAGGAACCTAGCTCCGTATTGCATGAATCTTTGCTGGCAACCGTCGTTCT 544
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 472 TTATTTTGGAGAGGAACCTAGCTCTGTATCGCATGAATCTTTGCTGGCAACCGTCGTTCT 531
Query 545 CTACCTCTCAAACACAACTCAAGGAGGAGAGCTTCTCTTCCCAAATTCAGAGATGAAACC 604
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 532 CTACCTCTCAAACACAACTCAAGGAGGAGAACTTCTCTTCCCAAATTCAGAGGTGAAACC 591
Query 605 CAAAAACAGTTGCTTGGAGGGCGGTAACATTTTAAGACCAGTAAAAGGAAACGCAATTCT 664
|||||| ||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 592 CAAAAAGAGTTGCTCAGAGGGCGGTAACATTTTAAGACCAGTGAAAGGAAACGCAGTTCT 651
Query 665 GTTCTTCACCAGGCTCTTGAATGCATCTTTGGATGGGAAAAGCACTCATTTGAGGTGCCC 724
|||||||| ||| | |||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 652 GTTCTTCAGCAGACACTTGAATGCATCTTTGGATGAGACAAGCACTCATTTGAGATGCCC 711
Query 725 TGTGGTGAAAGGAGAACTGTTAGTGGCAACAAAACTGATCTATGCGAAGAAACAAGCAAG 784
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TGTGGTAAAAGGAGAACTGTTAGTGGCAACAAAACTGATCTATGCGAAGAAACAAGCAAG 771
Query 785 AATTGAGGAGAGTGGGGAATGCAGTGATGAAGACGAAAACTGTGGACGATGGGCTAAGCT 844
|| ||||||||||||||||||| |||||||||| |||||||||| |||||||||||| ||
Sbjct 772 AAATGAGGAGAGTGGGGAATGCGGTGATGAAGATGAAAACTGTGAACGATGGGCTAACCT 831
Query 845 TGGGGAGTGCAAGAAAAACCCTGTCTATATGATTGGCTCTCCTGATTACTACGGTACCTG 904
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TGGTGAGTGCAAGAAAAACCCTGTCTATATGATTGGCTCTCCTGATTACTACGGTACCTG 891
Query 905 CAGAAAGAGTTGTAACGCTTGTTGATTCTTCAATCTTATCGCAAATAATTGAACATTTTC 964
|||||| ||||||||||||||||||||||||||||||| | | | | |
Sbjct 892 CAGAAAAAGTTGTAACGCTTGTTGATTCTTCAATCTTA--G----T----GCA-A----- 935
Query 965 ATACTCAAGTACTTGAGCTGTTTTTGGTCTATAAGATAGAATAAA-TAGTGAATAGTTAA 1023
||||| || |||||||||||||||||| ||||||||||| | ||||||||||
Sbjct 936 ATACT----TA----AGCTGTTTTTGGTCTATATGATAGAATAAAAT-GTGAATAGTT-- 984
Query 1024 GGGTCGTGGTGGTAATTAATTCCTC-TTGGCCATAGGAGAAAAGAATATACTCACTTAGA 1082
| || | ||||||||| |||||| ||| |||||||| ||| |||||||||||||||||
Sbjct 985 G--TCTTTGTGGTAATTGATTCCTTATTGACCATAGGATAAAGGAATATACTCACTTAGA 1042
Query 1083 TCTTCTTTGATATAACTAGAAGTCTTTGTCTATGTTGTTATCTATGTTTCTCTCGAATCA 1142
||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1043 TCTTCTTTGATATAACTAGAAGTCTTTTTCTATGTT---ATCTATGTTTCTCT--AATCA 1097
Query 1143 TAAATTTGCATCTT 1156
||||||||||||||
Sbjct 1098 TAAATTTGCATCTT 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5