BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25610.1
Length=2361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492266 jgi|Araly1|492266|fgenesh2_kg.7__1699__AT4G25610.1 3391 0.0
> Ahg492266 jgi|Araly1|492266|fgenesh2_kg.7__1699__AT4G25610.1
Length=2180
Score = 3391 bits (1836), Expect = 0.0
Identities = 2075/2187 (95%), Gaps = 30/2187 (1%)
Strand=Plus/Plus
Query 40 cctcctctctccgaaattttctctcatttttc--tc-tcttctcc--ttttttgcgtccc 94
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1 CCTCCTCTCTCCGAAATTTTCTCTCATTTTTCTTTCTTCTTCTCCTTTTTTTTGCGTCCC 60
Query 95 atcactttctctgattttctcggcgactttcttcCG--TCCCAAGCTCCTCTGAAT-CCC 151
||||||||||| ||||||||||||||||||||| || |||| | ||||||||||| |||
Sbjct 61 ATCACTTTCTCGGATTTTCTCGGCGACTTTCTTTCGTTTCCCCACCTCCTCTGAATCCCC 120
Query 152 CAGAAGGATCGCTCTCGATTCTTCTCTTCCTCCTATTCTCCGCCCGATCTGTTACTG-tt 210
| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 121 CTG-AGGATCGCTCTCGATTCTTCTCTTCTTCCTATTCTCCGCCCGATCTGTTACTGTTT 179
Query 211 tttttttttACTGTCGAATTCAATGGAGCTTGTGAAACAAGATGGGAATGATTCTCTCGA 270
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 TTTTTTTTTACTGTCAAATTCAATGGAGCTTGTGAAACAAGATGGGAATGATTCTGTCGA 239
Query 271 TATGCTTATCAGACGTGCGGTTGGAAAGGATCCGTTTCTTTCCTTCCCTAGACCTGAAAA 330
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 TATGCTTATCAGACGTGCGGTTGGAAAGGATCCGTTTCTTTCATTCCCTAGACCTGAAAA 299
Query 331 TACTCCTGTCCAGCTTTTTCAACTTCTCCATACCTTAGAACGTCCAGGCTGGCCATTGCT 390
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAGTCCAGTCCAGCTTTTTCAACTTCTCCATACCTTAGAACGTCCAGGCTGGCCATTGCT 359
Query 391 GACCCCTTTGAAGATACAAATGCAGAAGTGTGAAAAGTGCAGTAGGGAGTTTTGCTCTCC 450
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 GACCCCTTTGAAGATACAAATGCAGAAGTGTGAAAAGTGCAGTAGGGAGTTTTGTTCTCC 419
Query 451 TGTGAACTTTAGAAGACATAACCGCATGCATCGCCGTCAAAGAAAGCCGGAAAAGGATTT 510
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 420 TGTGAACTTTAGAAGACATAACCGCATGCATCGCCGTCAAAGGAAGCCTGAAAAGGATTC 479
Query 511 TGGCAAAGAGAGGGATGCGCTGGGAGCCTTTTGGAATAAGCTCTCTGCAACTGATGCAAA 570
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGGTAAAGATAGGGATGCGCTGGGAGCCTTTTGGAATAAGCTCTCTGCAACTGATGCAAA 539
Query 571 GGAGATTCTCTCAGTAAAGAGCATGATGCTTGAGGATATTCCTGGGGCATCAGTGGAGTC 630
||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 540 GGAGATTCTCTCATTAAAGAGCATGATGCTTGAGGATGTTCCTGGGGCATCAGTTGAGTC 599
Query 631 AGGATTAATGTCACTTATCGAAAAACCAGGCTATACTGCTCTGCCACAATATTATCTAAG 690
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 AGGATTAATGTCACTTATTGAAAAACCAGGATATACTGCTCTGCCACAATATTATCTAAG 659
Query 691 AGCTGGTTCTGGCCTTTTGGATCTTCTCCAGGCTAGACCACCTAGACTTCCAATTTCTTC 750
|||||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||
Sbjct 660 AGCTGGTTCTGGCCTTTTGGATATTCTCCAAGCTAGACCACCTAGGTTTCCAATTACTTC 719
Query 751 GCAGGAACTTTTTAGCATTCTTGATGATGCAAGTGAAAAAACTTTCCTGTCTAGCGAGGC 810
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 720 GCAGGAACTTTTTAGCATTCTTGATGATGCAAGTGAAAAAACTTTCCTGTGTAGCGAGGC 779
Query 811 TGCACCAATGCAAAAGTACATTTTTGACGGGGAAATAGGAAAAACTGTACTGGAGGCAAA 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGCACCAATGCAAAAGTACATTTTTGACGGGGAAATAGGAAAAACTGTACTGGAGGCAAA 839
Query 871 AAATGTTGTTGCTTGCGCAAGCTTCCTTCTGGAACAGCGATTGATTAAAGCATGGCTTGC 930
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 840 AAATGTTGTTGCTTGCGCAAGCTTCCTTCTGGAACAGCCATTGATTAAAGCATGGCTGGC 899
Query 931 TGACAAAGATGCTGAAGCTCTGAGGTGCCAAAATTTACTGGTTgaagaggaagaagctgc 990
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGACAAAGATGCGGAAGCTCTGAGGTGCCAAAATTTACTGGTTGAAGAGGAAGAAGCTGC 959
Query 991 tcgaagaagaaaagctgagctcttggagaggaagaagaggaagaagctaaggcagaaaga 1050
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCAAAGAAGACAAGCTGAGCTCTTGGAGAGGAAGAAGAGGAAGAAGCTAAGGCAGAAAGA 1019
Query 1051 gcagagagagaaggaccagaaaaaagatgctaaggaagacgagagCACCACATCAGAGGA 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCAGAGAGAGAAGGACCAGAAAAAAGATGCTAAGGAAGACGAGAGCACCACATCAGAGGA 1079
Query 1111 ACAACAATATCCAGCTGAGCCATCAAGCCCTTTATCTGTAGCTTCTGATTCTGAGGCACA 1170
|||| |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct 1080 ACAAGAATATCCAGCTGAGTCATCAAGCCCGTTATCTGTAGCTTCTGATGCTGAGGCACA 1139
Query 1171 GACACCAGATTCCTTACCAATTGATGATTCTTCATCCCTCGAGGAACCTCAAGTTTTGGA 1230
|| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 GAGACCAGATTCCATACCAATTGATGATTCTTCATCCCTCGAGGACCCTCAAGTTTTGGA 1199
Query 1231 AACTAATAATGGAAGAAACAGTGAAACGCAAGTGCCAATGGTTGATG--G----CTTAGA 1284
||| |||||||| |||||| ||||||| |||| |||||||||||||| | |||||
Sbjct 1200 AACGAATAATGGGAGAAACGGTGAAACTCAAGCGCCAATGGTTGATGATGATGGCTTAGG 1259
Query 1285 CAATGGCCAAAACATGGAAAGGCGAAGTGGCCGTAGGCAAATGCAAAGATCACAACAGGG 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CAATGGCCAAAACATGGAAAGGCGAAGTGGCCGTAGGCAAATGCAAAGATCACAACAGGG 1319
Query 1345 AATGCCGAATGGGTTCCATGCTGATCATGCACCAAACCTTGGAGGCATGCGAAAGAATGG 1404
|||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1320 AATGCCAAATGGATTCCATGCTAATCATGCACCAAAACTTGGAGGCATGCGAAAGAATGG 1379
Query 1405 AACCAACAGAGACGCAAGAGCCAATACTACTAAAGTTTGGAGCCGAAAATCCGATAACCC 1464
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AACCAACAGAGACGCAATAGTCAATACTACTAAAGTTTGGAGCCGAAAATCCGATAACCC 1439
Query 1465 CAAATTGATATCACAACATGCAGCAGTGACTCAGCAGGATCAGACAAAGAGCAGCGAATT 1524
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1440 CAAATTGATATCACAACATGCAGCAGTGACTCAGCAGGATCAAACAAAGATCAGCGAATT 1499
Query 1525 TATAGTTGGATC-GTTGAGTGTATCAATCCGAAACAGTGGCGAACATAACCAAACCAAAT 1583
|| | ||||||| || ||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1500 TAGAATTGGATCAGT-GAGTGTAACAATCCGAAACAGTGGAGAACATAACCAAACCAAAT 1558
Query 1584 GCAGTGAAGGGGAGAGAAGAACAAAGACTGTTGAGGTGAAACCCGCATCTGAGCAATCAA 1643
|||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1559 GCAGTGAAGGGGAGGGAAGAACAAAGACTGTTGAGGCGAAACCCACATCTGAGCAATCAA 1618
Query 1644 CTGTAAAAATATGGAGACCAGTGAGCAGTCAGGGAAGAAAAACCTCAACAGTCAATGGAA 1703
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct 1619 CTGTAAAAATATGGAGACCAGTGAGCAGTCAGGGAAGAAAAATCTCAACAGTCGATGAAA 1678
Query 1704 ACACAGACAAAGAAGATAAGA-GATCAAACCCAACTAC-ACCCGAAGTGAAAAAC-GCTC 1760
|||||| |||||||||||||| | |||||| ||||| | |||||||| ||| || ||||
Sbjct 1679 ACACAGGCAAAGAAGATAAGAAG-TCAAACTCAACT-CTACCCGAAGC-AAAGACCGCTC 1735
Query 1761 ATCACATAAGCTTGCAGTTTAACAACCACGAAGCAAAGGCGTTTCTTGCAAAGAGATGGA 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 ATCACATAAGCTTGCAGTTTAACAACCACGAAGCAAAGGCGTTTCTTGCAAAGAGATGGA 1795
Query 1821 AAGAGGCAACCTCTGCAGAACACGTGACATTGGTTCTGTCTCAGGAAACCGACATCTCAG 1880
||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |
Sbjct 1796 AAGAGGCAACCACTGCAGAACACGTGACACTGGTTCTCTCTCAGGAAACCGACATCTCGG 1855
Query 1881 GCAACAACACTCACGAGTCCTCAAATGGTGTTATAACCGCAAGATCAAAGCTGAGGACGA 1940
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1856 GCAACAACACTCACGAATCCTCAAATGGTGTTATAACCGCAAGACCAAAGCTGAGGACGA 1915
Query 1941 AAGCCGAAAAGGGCACAAAGGTAAAGTATGTTCCAAAACAGAGGATTCCTTGAAAACTTG 2000
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 AACCCGAAAAGGGCACGAAGGTAAAGTATGTTCCAAAACAGAGGATTCCTTGAAAACTTG 1975
Query 2001 AAAACAAAAA---GACAAGCCTGATTCTGGACCAGAGTATCATTCTTTTTAGGTATACCA 2057
|| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1976 AATACAAAAAAAAGACAATCCTGATTCTGGACCAGAGTATCATTCATTTTAGGTATACCA 2035
Query 2058 AAAGTGCAGTGTTAGCGAGCGAGACAGATattttcttt-gcttctagagagattttttcc 2116
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct 2036 AAAGTGCAGTGTTAGCGAGCGAGACAGATCTTTTCTTTTGCTTCTAGAGAGATTTTT-CC 2094
Query 2117 cattttaagagtcttcattcttttctttttttGACTTCATATTCTTGGTAGAAAGAGATT 2176
||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct 2095 CATTTTAAGAGTCTTCATTCTTT-CTTTTTTTTACTTCATATTCTTGGTAGACAGAGATT 2153
Query 2177 GTTTTGTTATTTTGTTGACCttttttt 2203
|||||||||||||||||||||||||||
Sbjct 2154 GTTTTGTTATTTTGTTGACCTTTTTTT 2180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88940722075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5