BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25620.1
Length=1994
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492265 jgi|Araly1|492265|fgenesh2_kg.7__1698__AT4G25620.1 1387 0.0
> Ahg492265 jgi|Araly1|492265|fgenesh2_kg.7__1698__AT4G25620.1
Length=1750
Score = 1387 bits (751), Expect = 0.0
Identities = 914/988 (93%), Gaps = 29/988 (3%)
Strand=Plus/Plus
Query 244 tattcatttctctc-gt-tattcgtttcgtattttGTTTGTGTTTATGATTTTACCTCC- 300
|||| | ||||||| | | ||| ||||| ||||||||||||||| |||||||||| ||
Sbjct 159 TATTTA-TTCTCTCATTCTTTTCTTTTCGGATTTTGTTTGTGTTT-TGATTTTACCGCCT 216
Query 301 --TTAGTTGCTGTGAGATCAAGAAGTGGTGAAAGAAAAGTTACTAAATCTGGATGTTATT 358
||| ||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 217 TGTTA-TTGCTATGAGATCAAGAGGTGGTGAAACAAAAGTT-GAAAATCTGGATGTTATT 274
Query 359 TGATTGTCGTCGTTGGTCTTGAGCTATGAGGAGCGTTAATAATAGTAGTGTCGACACCGT 418
||||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 275 TGATTGTCGTCGTTGGTCTTGAGATATGAGGAGC---------------GTCGACACGGT 319
Query 419 GAACGCCGCCGCTTCCGCCATCGTCTCCGCTGAGTCTAGAACACAACCGTCGTCGGTTCA 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 320 GAACGCCGCCGCTTCCGCCATCGTCTCCGCCGAGTCTAGAACACAACCGTCGTCGGTTCA 379
Query 479 GaaaaaaaGGGGAAGCTGGTGGAGCTTGTACTGGTGTTTTGGATCCAAGAAGAACAATAA 538
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 380 TAAAAAATGGGGAAGCTGGTGGAGCTTGTACTTGTGTTTTGGATCCAAGAAGAACAATAA 439
Query 539 AAGGATAGGCCACGCGGTGCTTGTACCCGAACCAGCTGCATCAGGAGCTGCGGTGGCTCC 598
|||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 440 GCGGATTGGCCACGCGGTGCTTGTACCCGAACAAGCTGCATCCGGAGCTGCGGTGGCTCC 499
Query 599 AGTCCAAAACTCTTCGAGCAATTCTACTTCAATATTCATGCCCTTTATAGCTCCTCCTTC 658
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 500 AGTCCAAAACTCTTCTAGCAATTCAACTTCAATGTTCATGCCCTTTATAGCTCCTCCTTC 559
Query 659 ATCTCCTGCTTCCTTTCTGCCATCAGGTCCTCCCTCTGCGTCACATACTCCTGATCCTGG 718
|||||||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 560 ATCTCCTGCTTCGTTTCTGCCATCAGGTCCTCCATCTGTGTCACATACTCCTGGTCCTGG 619
Query 719 TCTACTTTGTTCCCTAACCGTCAATGAACCGCCTTCAGCCTTTACTATTGGACCATACGC 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 620 TCTACTTTGTTCCCTAACCGTCAATGAACCGCCTTCAGCCTTTACTATTGGACCTTACGC 679
Query 779 TCATGAGACTCAACCTGTTACTCCTCCAGTGTTCTCTGCTTTCACAACGGAACCCTCCAC 838
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 680 TCATGAAACTCAACCTGTTACTCCTCCAGTGTTCTCTGCTTTCACAACGGAACCATCCAC 739
Query 839 CGCGCCATTCACGCCACCTCCTGAATCACCTTCTTCCCCTGAAGTGCCTTTTGCTCAGTT 898
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 740 CGCGCCATTCACTCCACCTCCTGAATCACCTTCTTCGCCTGAAGTGCCTTTTGCTCAGTT 799
Query 899 ACTTACATCTTCATTGGAAAGGGCTAGGAGGAACAGT-GGTGGTGGAATGAATCAGAAGT 957
||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||||||||
Sbjct 800 ACTTACATCTTCACTGGAAAAGGCTAGGAGGAACA-TCGGTGGCGGAATGAATCAGAAGT 858
Query 958 TTTCAGCTGCACACTACGAGTTTAAGTCTTGTCAAGTGTATCCTGGAAGTCCAGGTGGTA 1017
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 859 TTTCAGCTGCACACTACGAGTTTAAGTCTCATCAAGTGTATCCTGGAAGTCCAGGTGGTA 918
Query 1018 ATCTAATCTCTCCTGGTTCAGGTACATCTTCTCCTTACCCAGGGAAATGCTCCATCATCG 1077
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 919 ATCTAATCTCCCCTGGTTCAGGTACATCTTCTCCTTACCCAGGGAAATGCTCCATCATTG 978
Query 1078 AGTTTCGTATCGGCGAACCTCCAAAGTTTCTT-GGTTTTGAGCACTTCACAGCGCGTAAA 1136
||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 979 AGTTTCGTATCGGTGAACCTCCAAAGTTT-TTGGGGTTTGAGCACTTCACAGCGCGTAAA 1037
Query 1137 TGGGGATCAAGATTCGGTTCTGGATCCATCACACCTGCTGGACAAGGTTCAAGGTTGGGT 1196
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1038 TGGGGATCAAGATTCGGTTCTGGATCCATCACACCTGCTGGTCAAGGTTCAAGGTTGGGT 1097
Query 1197 TCAGGTGCTTTGACTCCTGATGG-CTCA 1223
||||||||| ||||||||||||| ||||
Sbjct 1098 TCAGGTGCTCTGACTCCTGATGGTCTCA 1125
Score = 924 bits (500), Expect = 0.0
Identities = 594/638 (93%), Gaps = 12/638 (2%)
Strand=Plus/Plus
Query 1289 TCTCACACCACTTGAAGGCAGTCTTTTGGATAGTCAGATCTCTGAGGTTGCGTCTTTAGC 1348
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1121 TCTCACACCACTTGAAGGCAGTCTTTTGGATAGTCAGATCACTGAGGTTGCGTCTTTAGC 1180
Query 1349 CAATTCGGACCACGGGTCGTCAAGGCATAATGATGAAGCT-CTCGTGGTTCCTCACAGAG 1407
|||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 1181 CAATTCGGACCACGGGTCATCAAGGCATAATGATGAAGCTGC-CGTGGTTCCTCACAGAG 1239
Query 1408 TTTCTTTCGAGTTGACTGGTGAAGACGTTGCACGGTGTCTTGCAAGCAAGCTAAACCGTT 1467
||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 1240 TTTCTTTTGAGTTGACAGGTGAAGACGTAGCACGTTGTCTTGCAAGCAAGCTAAACCGAT 1299
Query 1468 CCGGTTCACATGAAAAAGCAAGCGGCGAACATTTAAGACCAAACTGTTGTAAAACGTCGG 1527
||||||| ||||||| ||| ||||||||||| |||||||||||| |||||||||| ||||
Sbjct 1300 CCGGTTCGCATGAAAGAGCGAGCGGCGAACACTTAAGACCAAACGGTTGTAAAACATCGG 1359
Query 1528 GAGAAACAGAGAGCGAACAGAGTCAGAAGCTAAGATCGTTTTCTACAGGCTCTAACAAAG 1587
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1360 GAGAAACAGAGAGCGAACAGAGTCAGAAGCTAAGATCGTTTTCTACAGGCTCTAGCAAAG 1419
Query 1588 AATTCAAGTTTGATAGCACCAATGAAGAGATGATAGAGAAAATTCGATCGGAGTGGTGGG 1647
||||||| ||||||| ||| ||||||||||||||||||||| || |||||||||||||||
Sbjct 1420 AATTCAAATTTGATAACACGAATGAAGAGATGATAGAGAAAGTTAGATCGGAGTGGTGGG 1479
Query 1648 CGAATGAGAAGGTCGCCGGAAAAGGTGATCACAGTCCAAGAAACAGTTGGACTTTCTTTC 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 CGAATGAGAAGGTCGCCGGAAAAGGTGATCACAGTCCAAGAAACAGTTGGACTTTCTTTC 1539
Query 1708 CAGTCTTACGCTCTGGA-CATACTTAGCACAAAGAAATA-GC-TTTTACCTTCTTCATTA 1764
| ||||||||||||||| | |||| | ||||| ||| | || ||||| |||||||||||
Sbjct 1540 CGGTCTTACGCTCTGGATCC-ACTT-G-ACAAAAAAAAAAGCCTTTTATCTTCTTCATTA 1596
Query 1765 CCTCTAACATGGGAAGCAAAGTCAGTGATATGGTAAGAGATTGGGGTCTAACAACTATAC 1824
|||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||
Sbjct 1597 CCTCTAACATGGGAAGCAAATTCAGTG-TATGGTAAGATATTGGGGTCTAACAACTATAC 1655
Query 1825 ATATATATAGCTTGGTATTGTAGGTGTCTTTGTTCTTTGTACTGTTAATTATATAAAATA 1884
||||||| |||| | |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1656 ATATATA--GCTTTGCATTGTAGGTGTCTTTGTTCTTTGTACTGATAGTTATATAAAATA 1713
Query 1885 GTTTTAACACTTAAATGGTAGACTTATCATTGACAAAA 1922
|||| ||||| ||| |||||||||||||||||||||||
Sbjct 1714 GTTTAAACACATAA-TGGTAGACTTATCATTGACAAAA 1750
Score = 178 bits (96), Expect = 1e-43
Identities = 108/114 (95%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 37 AATAATATATACATGGAAGCGCGTGGGTCCAAACCGTCAAATTATGATGACGTGGCAAAA 96
|||||||| | ||||||||||||||||||| ||||||||| ||| |||||||||||||||
Sbjct 1 AATAATATTTTCATGGAAGCGCGTGGGTCCGAACCGTCAATTTAAGATGACGTGGCAAAA 60
Query 97 TCTCGTGGGAAATTGAATGAAAACTGTAAAAGATAACGACCGGTGACagagaga 150
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TCTCGTGGGAAATTGAATGAAAACTGTAAAAGATAACGACCGGTGAGAGAGAGA 114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74961602160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5