BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25630.1
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492264 jgi|Araly1|492264|fgenesh2_kg.7__1697__AT4G25630.1 1748 0.0
Ahg495317 jgi|Araly1|495317|fgenesh2_kg.8__1133__AT5G52470.1 937 0.0
> Ahg492264 jgi|Araly1|492264|fgenesh2_kg.7__1697__AT4G25630.1
Length=1206
Score = 1748 bits (946), Expect = 0.0
Identities = 1153/1246 (93%), Gaps = 42/1246 (3%)
Strand=Plus/Plus
Query 2 TGTATAAAAACACTTGCGAGCGCAGCTTCATCGCCATCGCCATTCTCTCTCTCATCAAAA 61
||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |||
Sbjct 1 TGTATAAAAACACTTTCGAGCGCAGCTTCTTCGCCATCGGCATTCTCTCTCTCATTGAAA 60
Query 62 GCTTTTCTCCTTGATTTTCGCATTCTTTAGAGTCTTAACGCAAAGATGAGACCTCCTCTA 121
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GCTTTTCTCCTTGATTTTCGCATTCTTTAGAGACTTAACGCAAAGATGAGACCTCCTCTA 120
Query 122 ACtggaagtggtggtgggttcagtggtggaagagggcgtggtggatacagtggtggtaga 181
||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 121 ACTGGAA---GTGGTGGGTTCAGTGGTGGAAGAGGCCGTGGTGGATACAGCGGTGGTAGA 177
Query 182 ggtgacggtggattcagtggtggtcgaggtggcggtggtAGAGGAGGAGGAAGAGGTTTC 241
||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 178 GGTGACGGTGGTTTCAGTGGTGGTCGAGGTGGCGGTGGT--A-GAGGAGGAAGAGGTTTT 234
Query 242 AGCGACCGTGGTGGTCGCGGCAGAGGAAGAGGACCACCACGTGGTGGTGCTCGCGGCGGC 301
||||||| ||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 235 AGCGACC---GTGGTCGCGGCAGAGGAAGAGGACCACCAGGCCGTGGTACTCGCGGCGGC 291
Query 302 AGAGGACCAGCTGGCCGTGGAGGCATGAAAGGAGGAAGCAAAGTGATTGTGGAACCTCAC 361
||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 292 AGAGGACCACCAGGCCGTGGAGGCATGAAAGGAGGAAGCAAAGTGCTTGTGGAACCTCAC 351
Query 362 AGACACGCAGGAGTGTTCATTGCAAAGGGTAAAGAAGATGCCCTTGTTACCAAGAATTTG 421
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 352 AGACACGCAGGAGTGTTCATTGCAAAGGGTAAAGAAGATGCTCTTGTTACCAAGAACTTG 411
Query 422 GTTCCTGGTGAAGCTGTCTACAACGAGAAGAGAATCTCTGTTCAGAACGAAGATGGAACC 481
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 412 GTTCCTGGTGAAGCTGTCTACAATGAGAAGAGAATCTCTGTTCAGAACGAAGATGGAACT 471
Query 482 AAGACTGAATACAGAGTTTGGAATCCTTTCCGTTCGAAGTTGGCTGCTGCTATTCTTGGT 541
||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 472 AAGGTTGAATACAGAGTTTGGAATCCTTTCCGTTCTAAGTTGGCAGCTGCTATTCTCGGC 531
Query 542 GGTGTTGATAACATCTGGATTAAACCTGGTGCTAAAGTTCTATACCTTGGTGCTGCTTCT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GGTGTTGATAACATCTGGATTAAACCTGGTGCTAAAGTTCTATACCTTGGTGCTGCTTCT 591
Query 602 GGAACCACAGTCTCTCATGTGTCTGATCTTGTTGGCCCTGAGGGGTGTGTGTACGCGGTT 661
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 592 GGAACCACAGTCTCTCATGTGTCTGATCTTGTTGGCCCTGAGGGATGTGTGTACGCGGTT 651
Query 662 GAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACCAATGTT 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACCAATGTT 711
Query 722 ATTCCAATCATCGAGGATGCTAGACACCCAGCTAAATACAGAATGCTTGTAGGCATGGTT 781
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 712 ATTCCAATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTAGGCATGGTT 771
Query 782 GATGTTATCTTCTCTGATGTTGCTCAGCCAGATCAGGCTAGGATCTTGGCTTTGAATGCA 841
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 772 GATGTTATCTTCTCTGATGTTGCCCAGCCAGATCAGGCTAGGATCTTGGGTTTGAATGCA 831
Query 842 TCATACTTCCTCAAGTCAGGAGGACACTTTGTGATCTCAATAAAGGCAAACTGTATCGAC 901
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 832 TCATACTTCCTCAAATCAGGAGGACACTTTGTGATCTCAATCAAGGCAAACTGTATTGAC 891
Query 902 TCCACCGTTCCAGCAGAAGCTGTGTTCCAGACTGAAGTGAAGAAGCTTCAACAGGAGCAA 961
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 892 TCAACGGTTCCAGCAGAAGCTGTGTTCCAGAATGAAGTGAAGAAGCTTCAACAGGAGCAA 951
Query 962 TTCAAACCAGCTGAGCAAGTGACGCTTGAGCCATTTGAGCGTGACCATGCATGTGTCGTT 1021
||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct 952 TTCAAGCCAGCTGAGCAAGTGACACTTGAGCCATTCGAGCGTGATCATGCCTGTGTCGTT 1011
Query 1022 GGTGGCTACCGTATGCCTAAGAAG-CCAAAGGCTGCTACTGCTGCTTAGAAGTTTTCTAC 1080
|||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |
Sbjct 1012 GGTGGCTACCGTATGCCTAAGAAGGCCAA-GGCTGCTACCGCTGCTTAGAAGTTTT-T-- 1067
Query 1081 TCTACGCTCTTCCCAGTACCTCAGATTTTGCTTTGTCTCGGTCTCTTTAGAATCTGTATG 1140
|| | | ||| ||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1068 TC--C-C-------AGTTCCTCAGATTTTGCAGTGTCTCGGTCTCTTTAGAATCTGTA-G 1116
Query 1141 GTTTTAGGGTTTATCTTAAATTTTGAGCTTT-GTAATCATTTTGAACCCTGGTTATGTTC 1199
| | ||||||||||||| |||| ||| |||||||||||||||||||||| |||||
Sbjct 1117 G-----G--TTTATCTTAAATTCTGAGTTTTTGTAATCATTTTGAACCCTGGTTTTGTTC 1169
Query 1200 ACTTGGCTTCCAGCGCTAACTTTTTCGACAAGTTTTTGATATATGG 1245
|||||||| | | ||||||||||||| ||||||| |||||
Sbjct 1170 ACTTGGCT---A-----A-CTTTTTCGACAAGGTTTTGATTTATGG 1206
> Ahg495317 jgi|Araly1|495317|fgenesh2_kg.8__1133__AT5G52470.1
Length=1104
Score = 937 bits (507), Expect = 0.0
Identities = 663/740 (90%), Gaps = 4/740 (1%)
Strand=Plus/Plus
Query 317 CGTGGAGGCATGAAAGGAGGAAGCAAAGTGATTGTGGAACCTCACAGACACGCAGGAGTG 376
|||||||| ||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 261 CGTGGAGGAATGAAAGGAGGAAGCAAAGTGCTTGTTGAGCCTCACAGACACGCAGGAGTG 320
Query 377 TTCATTGCAAAGGGTAAAGAAGATGCCCTTGTTACCAAGAATTTGGTTCCTGGTGAAGCT 436
|| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 321 TTTATTGCTAAGGGTAAAGAAGATGCTCTTGTTACTAAGAATTTGGTTCCTGGTGAAGCT 380
Query 437 GTCTACAACGAGAAGAGAATCTCTGTTCAGAACGAAGATGGAACCAAGACTGAATACAGA 496
|| ||||| |||||||| |||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 381 GTTTACAATGAGAAGAGGATCTCTGTTCAGAATGAAGATGGAACTAAGATTGAATACAGA 440
Query 497 GTTTGGAATCCTTTCCGTTCGAAGTTGGCTGCTGCTATTCTTGGTGGTGTTGATAACATC 556
|||||||||||||| | || ||||| |||||||| |||||||||||||||||||||||
Sbjct 441 GTTTGGAATCCTTTTAGATCTAAGTTAGCTGCTGCAATTCTTGGTGGTGTTGATAACATT 500
Query 557 TGGATTAAACCTGGTGCTAAAGTTCTATACCTT-GGTGCTGCTTCTGGAACCACAGTCTC 615
||||| |||||||||||||||||||| || ||| |||||||||||||||||||| |||||
Sbjct 501 TGGATCAAACCTGGTGCTAAAGTTCTTTA-CTTGGGTGCTGCTTCTGGAACCACTGTCTC 559
Query 616 TCATGTGTCTGATCTTGTTGGCCCTGAGGGGTGTGTGTACGCGGTTGAGTTTTCTCATAG 675
|||||| ||||| ||||||||||||||||| ||||| || || |||||||||||||||||
Sbjct 560 TCATGTTTCTGACCTTGTTGGCCCTGAGGGATGTGTTTATGCTGTTGAGTTTTCTCATAG 619
Query 676 AAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACCAATGTTATTCCAATCATCGA 735
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 620 AAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACTAATGTTATTCCAATCATCGA 679
Query 736 GGATGCTAGACACCCAGCTAAATACAGAATGCTTGTAGGCATGGTTGATGTTATCTTCTC 795
|||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||
Sbjct 680 AGATGCTAGACACCCTGCTAAGTACAGAATGCTTGTGGGCATGGTTGATGTCATATTCTC 739
Query 796 TGATGTTGCTCAGCCAGATCAGGCTAGGATCTTGG-CTTTGAATGCATCATACTTCCTCA 854
|||||||||||||||||||||||| || ||||||| | | ||||| |||| |||||||
Sbjct 740 TGATGTTGCTCAGCCAGATCAGGCAAGAATCTTGGGCCTC-AATGCCTCATTTTTCCTCA 798
Query 855 AGTCAGGAGGACACTTTGTGATCTCAATAAAGGCAAACTGTATCGACTCCACCGTTCCAG 914
| | || ||||||||||| |||||||| ||||| |||||||||||||| || ||| |||
Sbjct 799 AAACTGGTGGACACTTTGTTATCTCAATCAAGGCCAACTGTATCGACTCTACGGTTGCAG 858
Query 915 CAGAAGCTGTGTTCCAGACTGAAGTGAAGAAGCTTCAACAGGAGCAATTCAAACCAGCTG 974
||||||| |||||||||| ||| ||||||||||| ||||||||||| || || ||||| |
Sbjct 859 CAGAAGCAGTGTTCCAGAGTGAGGTGAAGAAGCTGCAACAGGAGCAGTTTAAGCCAGCAG 918
Query 975 AGCAAGTGACGCTTGAGCCATTTGAGCGTGACCATGCATGTGTCGTTGGTGGCTACCGTA 1034
| || ||||| || ||||| ||||||||||||||||| ||||| |||||||| ||||| |
Sbjct 919 AACAGGTGACTCTAGAGCCGTTTGAGCGTGACCATGCCTGTGTTGTTGGTGGTTACCGCA 978
Query 1035 TGCCTAAGAAGCCAAAGGCT 1054
|||||||||| | |||||||
Sbjct 979 TGCCTAAGAAACAAAAGGCT 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48339858756
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5