BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25660.1
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945520 jgi|Araly1|945520|scaffold_701749.1 1299 0.0
Ahg492258 jgi|Araly1|492258|fgenesh2_kg.7__1691__AT4G25680.1 1206 0.0
> Ahg945520 jgi|Araly1|945520|scaffold_701749.1
Length=825
Score = 1299 bits (703), Expect = 0.0
Identities = 786/824 (95%), Gaps = 14/824 (2%)
Strand=Plus/Plus
Query 246 GTGTTTCTTGGTAAAGATAGAATCAATGGCGGAGGTTGTTCTGCACATATACGATGTGAC 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGTTTCTTGGTAAAGATAGAATCAATGGCGGAGGTTGTTCTGCACATATACGATGTGAC 60
Query 306 GAACAGTGGATCAGAGAAGACTAACAACACCATAGTTCAGATCAATAGGTTCTTCAAAGA 365
|||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 61 GAACAGTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGTTCTTTAAAGA 120
Query 366 CGGGATCGGTCTTGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAAACGATGAATG 425
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGGATCGGTCTAGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAAACGATGAATG 180
Query 426 GTCTTATGGGTATTGTGAAC-A--AGGAACTGGTGTGTTCAGCTGTCCTAGTGGCAAGAA 482
|||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCTTACGGGTATTGTGAACAAGGAGGAACTGGTGTGTTCAGCTGTCCTAGTGGCAAGAA 240
Query 483 TCCAATGTACACATATCGTGAGAAAATTGTTCTTGGGAAGACAGATTGTACAATCTTCAT 542
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 241 TCCAATGTACACATATCGTGAGAAAATTGTTCTTGGCAAGACAGATTGTACAATCTTCTT 300
Query 543 GGTAAATCAGATCTTGCGTGAGCTCAGCAGGGAATGGCCAGGACACACTTATGATTTGCT 602
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 GGTAAATCAGATCTTGCGTGAGCTCAGCAGGGAATGGCCTGGACACACTTATGATTTGCT 360
Query 603 GTCCAAAAATTGCAATCACTTCTGCGATGTATTATGTGACCGCCTTGGTGTGCCAAAGAT 662
||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 361 GTCCAAAAATTGCAACCACTTCTGTGATGTATTATGTGACCGGCTTGGTGTGCCAAAGAT 420
Query 663 CCCAGGTTGGGTGAATCGTTTTGCTCATGCTGGCGACACAGCCTTGGAAGTAGCAGGAAA 722
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 CCCAGGTTGGGTGAATCGTTTTGCTCATGCTGGCGACACAGCCTTGGAAGTGGCAGGAAA 480
Query 723 CACAGCAATGCGGGTAAAGCAAGCCAAAACTGAACTTGTTTCAGCCAGTAAAGTGGCTTA 782
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 481 CACAGCAATGCGGGTAAAGCAAGCCAAAACTGAACTCGTGTCAGCTAGTAAAGTGGCTTA 540
Query 783 TCGCTTCCTTTCGAATGTTACCTCAAACATAACCAATGGTTC-AA-------A-TGGCTC 833
|||||||||||||||||||||||| ||||||||||||||||| || | ||||||
Sbjct 541 TCGCTTCCTTTCGAATGTTACCTCGAACATAACCAATGGTTCGAATGGCCCCAATGGCTC 600
Query 834 CAGTGGCTCTCCACAGCGGCCAGGAACTCTCAACAATTCAGACAATGGGAGCTTTAGATT 893
|| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 CAATGGCTCTCCACAACGGCCAGGAACTCTCAACAATTCAGACAATGGGAACTTTAGATT 660
Query 894 GCAAGGTAGTTGGTTGAAAGGTATACTTAACACTGCCAAACCCTCCACAAGTACAGAGAT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCAAGGTAGTTGGTTGAAAGGTATACTTAACACTGCCAAACCCTCCACAAGTACAGAGAT 720
Query 954 AGGGAACAAAGAGGAAGATACAAATCATACAATCACCAATCAGAAAAAGCAGAA-CCGTG 1012
||||||||||||||||||| |||||||||||||| | |||||||||||||| || |||||
Sbjct 721 AGGGAACAAAGAGGAAGATGCAAATCATACAATCGCGAATCAGAAAAAGCA-AAGCCGTG 779
Query 1013 ACTCTGATGTTCTACTATTTCAGTAGCAACTGTACTGATCCACC 1056
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 ACTCTGATGCTCTACTATTTCAGTAGCAACTGTACTGATCCACC 823
> Ahg492258 jgi|Araly1|492258|fgenesh2_kg.7__1691__AT4G25680.1
Length=1235
Score = 1206 bits (653), Expect = 0.0
Identities = 866/967 (90%), Gaps = 22/967 (2%)
Strand=Plus/Plus
Query 135 TTTGGATTTGTTGAA-GAAAAGTGGATTTGGTACGATTCTATAGGTTTCCTTCTTC-TCT 192
||| |||| ||| || | |||||||||||||||||| ||| ||||||||| ||||| |
Sbjct 134 TTT-GATTCGTTTAACG-AAAGTGGATTTGGTACGAGTCTTTAGGTTTCCATCTTCACCA 191
Query 193 GAAG--CTACTATAGAGAGAATCTGCGAGCTCAATTTCGTAGTAAATTAGGGTTCGTGTT 250
||| ||| |||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct 192 AAAGCTCTA-TATAGAAAGAATCTGCGAGCTCAATTTCGTAG-GAACTAGGGTTCGTGTT 249
Query 251 TCTTGGTAAAGATAGAATCAATGGCGGAGGTTGTTCTGCACATATACGATGTGACGAACA 310
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 250 TCTTGGTAAAGATAGAATCAATGACGGAGGTTGTTCTGCACATATACGATGTGACGAACA 309
Query 311 GTGGATCAGAGAAGACTAACAACACCATAGTTCAGATCAATAGGTTCTTCAAAGACGGGA 370
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 310 GTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGTTCTTCAAAGACGGGA 369
Query 371 TCGGTCTTGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAAACGATGAATGGTCTT 430
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 370 TCGGTCTTGGCGGTATATTCCACAGCGCCATTCAGGTATATGGAGGTGATGAATGGTCTT 429
Query 431 ATGGGTATTGTGAACAAGGAACTGGTGTGTTCAGCTGTCCTAGTGGCAAGAATCCAATGT 490
| || ||||||||||||||||||||||| |||||||| || ||||| |||||||||||||
Sbjct 430 ACGGATATTGTGAACAAGGAACTGGTGTTTTCAGCTGCCCCAGTGGAAAGAATCCAATGT 489
Query 491 ACACATATCGTGAGAAAATTGTTCTTGGGAAGACAGATTGTACAATCTTCATGGTAAATC 550
||||||| ||||||||||| || ||||| || |||||||| |||||||||||||||||||
Sbjct 490 ACACATACCGTGAGAAAATCGTCCTTGGAAAAACAGATTGCACAATCTTCATGGTAAATC 549
Query 551 AGATCTTGCGTGAGCTCAGCAGGGAATGGCCAGGACACACTTATGATTTGCTGTCCAAAA 610
|||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 550 AGATGTTGCGTGAGCTCAGCAGGGAATGGCCAGGACACACTTATGATTTGTTATCAAAAA 609
Query 611 ATTGCAATCACTTCTGCGATGTATTATGTGACCGCCTTGGTGTGCCAAAGATCCCAGGTT 670
|||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 610 ATTGCAATCATTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAGGTT 669
Query 671 GGGTGAATCGTTTTGCTCATGCTGGCGACACAGCCTTGGAAGTAGCAGGAAACACAGCAA 730
|||||||||| |||||| ||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 670 GGGTGAATCGGTTTGCTAATGCTGGTGACACAGCCTTGGAAGTGGCAGGAAACACAGCGA 729
Query 731 TGCGGGTAAAGCAAGCCAAAACTGAACTTGTTTCAGCCAGTAAAGTGGCTTATCGCTTCC 790
||||| | |||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 730 TGCGGATGAAGCAAGCCAAAACTGAACTCGTTTCAGCTAGTAAAGTGGCGTATCGCTTCC 789
Query 791 TTTCGAATGTTACCTCAAACATAACCAATGGTTCAAATGGCTCCAGTGGCTCTCCACAGC 850
| ||||||||||| || ||| |||||||||| || |||||||| | | ||| | | |
Sbjct 790 TCTCGAATGTTACATCGAACGTAACCAATGGCTCCAATGGCTC---T--C-CTC-A-A-C 840
Query 851 GGCCAGGAACTCTCAACAATTCAGACAATGGGAGCTTTAGATTGCAAGGTAGTTGGTTGA 910
| | |||||||||||||||||||||| |||| ||| |||||||||||||||||| | |
Sbjct 841 GATCGGGAACTCTCAACAATTCAGACAGCGGGAACTTGAGATTGCAAGGTAGTTGGCTCA 900
Query 911 AAGG-TATACTTAACACTGCCAAACCCTCCACAAGTACAGAGATAGGGAACAAAGAGGAA 969
|||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGGCT-TACTTAACACAGCCAAACCCTCCACAAGTACAGAGATAGGGAACAAAGAGGAA 959
Query 970 GATACAAATCATACAATCACCAATCAGAA-AAAGCAGAACCGTGACTCTGATGTTCTACT 1028
||| |||||||| ||||||||| |||||| ||| || | |||||||||||||||||||||
Sbjct 960 GATGCAAATCATGCAATCACCAGTCAGAAGAAA-CATAGCCGTGACTCTGATGTTCTACT 1018
Query 1029 ATTTCAGTAGCAACTGTACTGATCCACCCCAATGTATTCACTTA-CTGTATATCCACCTA 1087
||||||||||||| |||| |||||||| ||| | |||| ||| |||||||||||||
Sbjct 1019 GTTTCAGTAGCAACCGTACCGATCCACCACAACGCATTCGGTTAGCTGTATATCCACCGG 1078
Query 1088 TCCAAAA 1094
|||||||
Sbjct 1079 TCCAAAA 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46204975404
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5