BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25672.1
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492259 jgi|Araly1|492259|fgenesh2_kg.7__1692__AT4G25670.1 1805 0.0
Ahg492255 jgi|Araly1|492255|fgenesh2_kg.7__1688__AT4G25690.1 926 0.0
Ahg495325 jgi|Araly1|495325|fgenesh2_kg.8__1141__AT5G52552.1 121 2e-26
> Ahg492259 jgi|Araly1|492259|fgenesh2_kg.7__1692__AT4G25670.1
Length=1201
Score = 1805 bits (977), Expect = 0.0
Identities = 1138/1212 (94%), Gaps = 25/1212 (2%)
Strand=Plus/Plus
Query 13 TCCTTCTATTATCctctctctc-tcgtcttcttcgtctgctcttctttt--ttatctctc 69
|||||||||||||||| ||||| || |||||||||||| || || |||| |||||||||
Sbjct 1 TCCTTCTATTATCCTCCCTCTCGTCTTCTTCTTCGTCT-CT-TTTTTTTAATTATCTCTC 58
Query 70 gaaattcctctctct-ttc-tc-tctGCATCAAAACAGCAACTTTACTTCTGCGTTTTTG 126
||||||||||| ||| ||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct 59 GAAATTCCTCTTTCTCTTCTTCGTCTGCATCAAACCAGCAACTTTACTTCTGTATTTTTG 118
Query 127 TTTATCTCTCTGTATTATC-CGATTAATTTAAAGGAGTTCTTTG-AAGGCAGCTGCTTCT 184
||| ||||||| | | || | |||||||| ||||||||||||| |||||||||||||||
Sbjct 119 TTTCTCTCTCTCT-CTCTCTCTATTAATTTGAAGGAGTTCTTTGAAAGGCAGCTGCTTCT 177
Query 185 ATGCCATATTGCCGAGAAAATGGGCGAGTCTAAGGGGTGCGGGAATGTTGGACGAATGAT 244
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATGCCATATTGCAGAGAAAATGGGCGAGTCTAAGGGGTGCGGGAATGTTGGACGAATGAT 237
Query 245 TTCGAAGAATAAGTCTGCGAATTCTTATAACCTCTCTCTTCAGTTGTCTCCTGTTGTTTC 304
| | |||||||||||||| || ||||||||| ||||||||| |||||| |||||||||||
Sbjct 238 TCCAAAGAATAAGTCTGCTAACTCTTATAACGTCTCTCTTCGGTTGTCGCCTGTTGTTTC 297
Query 305 TTTCTGGGATTGTATTGTCCGCACCATGAGGTATTCCTATATACCAGAGTGGGTGTAGTT 364
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTTTTGGGATTGTATTGTCCGCACCATGAGGTATTCCTATATACCAGAGTGGGTGTAGTT 357
Query 365 CTTGAGTTCCTCTACAACATCATCGAGTTTAGTGCAGTT-TTTTAGTTAGAAATTTATAG 423
|||||||| |||||| ||||||||||||||||||||||| |||||||||| || ||||||
Sbjct 358 CTTGAGTTACTCTACGACATCATCGAGTTTAGTGCAGTTATTTTAGTTAG-AA-TTATAG 415
Query 424 TCAAGCAATAATGGATCACACGGTGTGCAAGCAAGTTCAGCCAGTCGTTAGGAAAGCGAA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 416 TCAAGCAATAATGGATCACACGGTGTGCAAGCAAGTTCAGCCAGTCGTTAGGAAAGC-AA 474
Query 484 -GAAGAAGCATGGTAAAGATGAATTTGATCGTATCAAACAAGCTGAGAAGAAAAAGAGAC 542
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GGAAGAAACATGGTAATGATGAATTTGATCGTATCAAACAAGCTGAGAAGAAAAAGAGAC 534
Query 543 GTTTGGAGAAAGCTCTTGCTACTTCTGCAGCCATCCGGGCTGAGCTTGAAAAGAAGAAGC 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GTTTGGAGAAAGCTCTTGCTACTTCTGCAGCCATCCGGGCTGAGCTTGAAAAGAAGAAGC 594
Query 603 AGAAGAGATTGGAAGAACAACAAAGGTTAGATGAAGAAGGAGCTGCAATTGCAGAAGCTG 662
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 595 AGAAGAGATTGGAAGAACAACAGAGGTTAGATGAAGAAGGAGCTGCAATTGCAGAAGCTG 654
Query 663 TTGCTCTGCACGTCCTACTGGGCGAAGATTCTGATGATTCATCTCGAGTCA-AGTTTGGT 721
| |||||||||||||||||||||||||||||||||||||||||||| | || | || |||
Sbjct 655 TCGCTCTGCACGTCCTACTGGGCGAAGATTCTGATGATTCATCTCGGGCCATACTT-GGT 713
Query 722 GAAGAAAAGGGTTTCACAATGGATCTGTTTAGAGATGAAAGAACTAACTACGTTCCTCGC 781
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 714 GAAGAAAAGGGTTTCACAATTGATCTGTTTAGAGATGAAAGAACCAACTATGTTCCTCGC 773
Query 782 CAAAGCTGTGCTAGCTATGCGGTTCAAGGGATTGGGTTTGTGTCAAATGGCTATGGACTA 841
|| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 774 CAGAGTTGTGCTAGCTATGCGGTTCAAGGGATTGGGTTTGTGTCAAATGGTTATGGACTA 833
Query 842 GGAGATAGTAACTGGTCGCCATTCACGAGGAGGGGTGCTTGGGATAACAACATGGGAATA 901
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 834 GGAGATAGTAACTGGTCGCCATTCACGAGAAA---TGCTTGGGATAACAACATGGGAATA 890
Query 902 TCAGCTGATTTGATTGCTGCTCAGGCTGTCTCGGCGCTACAGATATCTGAAAATGCTGAT 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TCAGCTGATTTGATTGCTGCTCAGGCTGTCTCGGCGCTACAGATATCTGAAAATGCTGAC 950
Query 962 GGGAACGCCTTTGTGTTCAATGGGATGTTCCGGGGATGACAGA-TGCCACGACTCGTCCT 1020
||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 951 GGGAACGCCTTTGTGTTCAATGGGATGTTCCGGGGTTGACAAAATGCCACGACTCGTCCT 1010
Query 1021 CATTCGGTTTTTAAAATAAACATTTGCCTTCTGCTTGCTTTGGTGTCAATGCTCTGtt-t 1079
|||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 1011 CATTTGGTTTCTAAAATAAACATTTGCCTTCTGCT-GCTTTGGTGTGAATGCTCTGTTGT 1069
Query 1080 ttttCTCTTGACGTTAGACCTTATACTCTGTTTTCGTTCGCTGTAATATTAAAGACGCAT 1139
||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1070 TTTTCTCTTGACGTTAGACATTATACTCTGTTTTCGTTCTCTGTAATATTACAGACGCAT 1129
Query 1140 TTTGAGTTGTATCTATTATACATGTTGAAGTCTCTTCATA-CTGCATTGTTGCTTATCTT 1198
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1130 TTTGAGTTGTATCTATCATACATGTTGAAGTCTCTTCATATCTGCATTGTTGCTTATCTT 1189
Query 1199 ATATCACATTCT 1210
||||||||||||
Sbjct 1190 ATATCACATTCT 1201
> Ahg492255 jgi|Araly1|492255|fgenesh2_kg.7__1688__AT4G25690.1
Length=1432
Score = 926 bits (501), Expect = 0.0
Identities = 725/828 (88%), Gaps = 35/828 (4%)
Strand=Plus/Plus
Query 199 AGAAAATGGGCGAGTCTAAGGGGTGCGGGAATGTTGGACGAATGATTTCGAAGAATAAGT 258
|||||||||| ||||||| |||| ||||| | |||||||||||| | || ||||||
Sbjct 482 AGAAAATGGGAGAGTCTACTGGGTTTGGGAAAGGAGGACGAATGATTCCAAATCATAAGT 541
Query 259 CTGCGAATTCTTATAACCTCTCTCTTCAGTTGTCTCCTGTTGTTTCT-TTCTGGGATTGT 317
|||| ||||| ||||||||||| ||||||||||||||||||| ||| || |||||||||
Sbjct 542 CTGCAAATTCCTATAACCTCTCCCTTCAGTTGTCTCCTGTTGACTCTGTT-TGGGATTGT 600
Query 318 ATTGTCCGCACCATGAGGTATTCCTATATACCAGAGTGGGTGTAGTTC-TTGAGTTCCTC 376
||||| || ||||||||||||||||||||||| |||||| ||||| || |||| || ||
Sbjct 601 ATTGTTCGGACCATGAGGTATTCCTATATACCTGAGTGGTTGTAG-TCTTTGAAATCATC 659
Query 377 TACAACATCATCGAG-TTTAGTGCAGTTTT--TTAGTTAGAAATT-TATAG---T--CAA 427
| || | || |||| ||||||||| |||| |||||||| |||| || || | |||
Sbjct 660 T--AAGA-CAACGAGTTTTAGTGCA-TTTTACTTAGTTAG-AATTATAGAGTTATACCAA 714
Query 428 GCAATAATGGATCACACGGTGTGCAAGCAA---GTTCAGCCAGTCGTTAGGAAAGCGAAG 484
|||||||||||||||||||||||||||||| ||||||||||| ||||||| | |
Sbjct 715 GCAATAATGGATCACACGGTGTGCAAGCAAGTTGTTCAGCCAGTTACTAGGAAA--G-TG 771
Query 485 AAGAAGCATGGTAAAGATGAATTTGATCGTATCAAACAAGCTGAGAAGAAAAAGAGACGT 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AAGAAGCATGGTAAAGATGAATTTGATCGTATCAAACAAGCTGAGAAGAAAAAGAGACGT 831
Query 545 TTGGAGAAAGCTCTTGCTACTTCTGCAGCCATCCGGGCTGAGCTTGAAAAGAAGAAGCAG 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 832 TTGGAGAAAGCTCTTGCTACTTCTGCAGCCATCCGGGCTGAGCTTGAAAAGAAGAAACAG 891
Query 605 AAGAGATTGGAAGAACAACAAAGGTTAGATGAAGAAGGAGCTGCAATTGCAGAAGCTGTT 664
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 892 AAGAGATTGGAAGAACAACAGAGGTTAGATGAAGAAGGAGCTGCAATTGCAGAAGCTGTC 951
Query 665 GCTCTGCACGTCCTACTGGGCGAAGATTCTGATGATTCATCTCGAGTCAAGTTTGGTGAA 724
|||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||
Sbjct 952 GCTCTGCACGTCCTACTGGGCGAAGATTCTGATGATTCATCTCGGGCCATGCTTGGTGAA 1011
Query 725 GAAAAGGGTTTCACAATGGATCTGTTTAGAGATGAAAGAACTAACTACGTTCCTCGCCAA 784
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1012 GAAAAGGGTTTCACAATGGATCTGTTTAGAGATGAAAGAACCAACTATGTTCCTCGCCAG 1071
Query 785 AGCTGTGCTAGCTATGCGGTTCAAGGGATTGGGTTTGTGTCAAATGGCTATGGACTAGGA 844
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1072 AGTTGTGCTAGCTATGCGGTTCAAGGGATTGGGTTTGTGTCAAATGGTTATGGACTAGGA 1131
Query 845 GATAGTAACTGGTC-GC--CAT-TCA-CGAGG-AGG--GG-TGCTTGGGATAACAACATG 895
|||||||| ||||| | ||| | | | | | | || || |||||||| |||||||
Sbjct 1132 GATAGTAATTGGTCAGTGTCATATAAGCCATTCATGAAGGATGTTTGGGATAGCAACATG 1191
Query 896 GGAATATCAGCTGATTTGATTGCTGCTCAGGCTGTCTCGGCGCTACAGATATCTGAAAAT 955
| |||||| || ||||||||||||||||||||||| ||| | |||||||||||||| |
Sbjct 1192 GTAATATCTGCGGATTTGATTGCTGCTCAGGCTGTTTCGTCACTACAGATATCTGAGGAC 1251
Query 956 GCTGATGGGAACGCCTTTGTGTTC-AATGGGATGTTCCGGGGATGACA 1002
|||||| ||||||| ||||| ||| || ||||||| |||||||||
Sbjct 1252 GCTGATAGGAACGCGTTTGTCTTCGAAACA-ATGTTCCAGGGATGACA 1298
> Ahg495325 jgi|Araly1|495325|fgenesh2_kg.8__1141__AT5G52552.1
Length=1551
Score = 121 bits (65), Expect = 2e-26
Identities = 100/117 (85%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 887 AACAACATGGGAATATCAGCTGATTTGATTGCTGCTCAGGCTGTCTCGGCGCTACAGATA 946
||||||||| |||||||||||||||||||||||||||| ||||| ||| | ||||||||
Sbjct 1313 AACAACATGAGAATATCAGCTGATTTGATTGCTGCTCAAGCTGTGTCGTCACTACAGATC 1372
Query 947 TCTGAAAATGCTGATGG-GAACGCCTTTGTGTTCAATGGGATGTTCCGGGGATGACA 1002
||||| ||| |||| | || |||| |||| ||||||||||||||| | |||||||
Sbjct 1373 TCTGAGAATACTGACGTTGA-CGCCATTGTCTTCAATGGGATGTTCAGAAGATGACA 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45290025396
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5