BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25680.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492258 jgi|Araly1|492258|fgenesh2_kg.7__1691__AT4G25680.1 1768 0.0
Ahg945520 jgi|Araly1|945520|scaffold_701749.1 1062 0.0
> Ahg492258 jgi|Araly1|492258|fgenesh2_kg.7__1691__AT4G25680.1
Length=1235
Score = 1768 bits (957), Expect = 0.0
Identities = 1152/1242 (93%), Gaps = 30/1242 (2%)
Strand=Plus/Plus
Query 1 ACCACCACCGCCGCACCAGTTTCTTCTTCATCTCCTA---C-G--TCTGAAATTGAGA-A 53
||||||||||||||||||||||||||| ||||||||| | | ||||||||||| | |
Sbjct 1 ACCACCACCGCCGCACCAGTTTCTTCTCCATCTCCTACGTCTGATTCTGAAATTGA-ATA 59
Query 54 ATC--G-GAAGAAGAAAGAT--AA--GTCTAATCTTGTGCCTTTAGATTTC-TTTTCGGG 105
||| | ||||||||||||| || |||||||||||||| |||||| ||| |||| |||
Sbjct 60 ATCGGGAGAAGAAGAAAGATAAAAGGGTCTAATCTTGTGCTTTTAGA-TTCATTTT-GGG 117
Query 106 -GAGATCTAGTAGTTGTTGGATTCGTTAAACGGAGAAGTGGATTTGGTACGAGTCTTTAG 164
|||||||||||| ||| |||||||| ||| || |||||||||||||||||||||||||
Sbjct 118 AAAGATCTAGTAGTCGTTTGATTCGTTTAAC-GA-AAGTGGATTTGGTACGAGTCTTTAG 175
Query 165 GTTTCCTTCTTCACCAAAAGCTCTATATAGAGAGAATCTGCGAGCTCTTTTTGGTAGGAA 224
|||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
Sbjct 176 GTTTCCATCTTCACCAAAAGCTCTATATAGAAAGAATCTGCGAGCTCAATTTCGTAGG-A 234
Query 225 ATTAGGGTTCGTGTTGCTTGGTAAATATAGAATCAATGACGGAGGTTGTTCTGCATATAT 284
| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 235 ACTAGGGTTCGTGTTTCTTGGTAAAGATAGAATCAATGACGGAGGTTGTTCTGCACATAT 294
Query 285 ACGATGTGACGAACAGTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGT 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ACGATGTGACGAACAGTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGT 354
Query 345 TCTTCAAAGACGGGATCGGTCTTGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAA 404
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 355 TCTTCAAAGACGGGATCGGTCTTGGCGGTATATTCCACAGCGCCATTCAGGTATATGGAG 414
Query 405 ACGATGAATGGTCTTACGGGTATTGTGAACTAGGAACTGGTGTATTCAGCTGCCCGAGTG 464
||||||||||||||||| |||||||||| |||||||||||| ||||||||||| ||||
Sbjct 415 GTGATGAATGGTCTTACGGATATTGTGAACAAGGAACTGGTGTTTTCAGCTGCCCCAGTG 474
Query 465 GAAAGAATCCAATGTACACATACCGTGAGAAAATCGTCCTTGGCAAAACAGATTGCACAA 524
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 475 GAAAGAATCCAATGTACACATACCGTGAGAAAATCGTCCTTGGAAAAACAGATTGCACAA 534
Query 525 TCTTCATGGTGAATCAGATGTTGCGTGAACTCAGCAGGGAATGGCCTGGACACACTTATG 584
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 535 TCTTCATGGTAAATCAGATGTTGCGTGAGCTCAGCAGGGAATGGCCAGGACACACTTATG 594
Query 585 ATTTGTTGTCAAAAAATTGCAATCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGC 644
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 595 ATTTGTTATCAAAAAATTGCAATCATTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGC 654
Query 645 CAAAGATCCCAGGTTGGGTTAATCGCTTTGCTAATGCTGGGGACACAGCCTTGGAAGTGG 704
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 655 CAAAGATCCCAGGTTGGGTGAATCGGTTTGCTAATGCTGGTGACACAGCCTTGGAAGTGG 714
Query 705 CAGGAAACACAGCAATGCGGATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAG 764
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 715 CAGGAAACACAGCGATGCGGATGAAGCAAGCCAAAACTGAACTCGTTTCAGCTAGTAAAG 774
Query 765 TGGCTTATCGCTTCCTCTCGAATGTTACTTCGAACGTAACCAATGGCTCCAATGGCTCTC 824
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 775 TGGCGTATCGCTTCCTCTCGAATGTTACATCGAACGTAACCAATGGCTCCAATGGCTCTC 834
Query 825 CACAACGACCGGGAACTCTCAACAATTCAGACAGCGGGAACTTGAGATTGCAAGGTAGTT 884
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CTCAACGATCGGGAACTCTCAACAATTCAGACAGCGGGAACTTGAGATTGCAAGGTAGTT 894
Query 885 GGCTCAAAGGCTTACTTAACACAGCCAAACCCTCCACTAGTACAGAGATAGGGAACAAAG 944
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 895 GGCTCAAAGGCTTACTTAACACAGCCAAACCCTCCACAAGTACAGAGATAGGGAACAAAG 954
Query 945 ATGAAGATGCAAATCATGCAGTCACCAATCAGAAGAAACAAAGCCGTGACTCTGATGTTC 1004
| |||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||
Sbjct 955 AGGAAGATGCAAATCATGCAATCACCAGTCAGAAGAAACATAGCCGTGACTCTGATGTTC 1014
Query 1005 TACTGTTTCAGTAGCAACCGTACCGATCCACCACAATGCATTCGGTTAGCTGTATATCCA 1064
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1015 TACTGTTTCAGTAGCAACCGTACCGATCCACCACAACGCATTCGGTTAGCTGTATATCCA 1074
Query 1065 CCGGTCTAAGAGTCACGCAC--TATTCTCCTCGTCTGTACCCATTACTCTGTATCAACGT 1122
|||||| || | |||| ||| || ||||||||||||||||||||||| ||||||||||
Sbjct 1075 CCGGTCCAAAACTCACACACACTAGTCTCCTCGTCTGTACCCATTACTTTGTATCAACGC 1134
Query 1123 TGGAA-CCTGTCATTTTTT-CT-TGAGTTTTTAGCTCAC--GTGTGCTTTTGTTAAGATC 1177
||||| || ||||||||| | || |||||||||||| |||||||||||||||||||
Sbjct 1135 TGGAATCCA-TCATTTTTTTCCCTGCGTTTTTAGCTCAAATGTGTGCTTTTGTTAAGATC 1193
Query 1178 ATTCTCGCTTGTTACTGTCAAATCTTAACATCAAAAGGTTTA 1219
||||||| ||||| | |||| |||||||||||||||||||||
Sbjct 1194 ATTCTCGGTTGTTGCGGTCATATCTTAACATCAAAAGGTTTA 1235
> Ahg945520 jgi|Araly1|945520|scaffold_701749.1
Length=825
Score = 1062 bits (575), Expect = 0.0
Identities = 746/825 (90%), Gaps = 25/825 (3%)
Strand=Plus/Plus
Query 235 GTGTTGCTTGGTAAATATAGAATCAATGACGGAGGTTGTTCTGCATATATACGATGTGAC 294
||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1 GTGTTTCTTGGTAAAGATAGAATCAATGGCGGAGGTTGTTCTGCACATATACGATGTGAC 60
Query 295 GAACAGTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGTTCTTCAAAGA 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GAACAGTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGTTCTTTAAAGA 120
Query 355 CGGGATCGGTCTTGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAAACGATGAATG 414
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGGATCGGTCTAGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAAACGATGAATG 180
Query 415 GTCTTACGGGTATTGTGAACTAGGA--A-CTGGTGTATTCAGCTGCCCGAGTGGAAAGAA 471
|||||||||||||||||||| |||| | ||||||| |||||||| || ||||| |||||
Sbjct 181 GTCTTACGGGTATTGTGAACAAGGAGGAACTGGTGTGTTCAGCTGTCCTAGTGGCAAGAA 240
Query 472 TCCAATGTACACATACCGTGAGAAAATCGTCCTTGGCAAAACAGATTGCACAATCTTCAT 531
||||||||||||||| ||||||||||| || |||||||| |||||||| ||||||||| |
Sbjct 241 TCCAATGTACACATATCGTGAGAAAATTGTTCTTGGCAAGACAGATTGTACAATCTTCTT 300
Query 532 GGTGAATCAGATGTTGCGTGAACTCAGCAGGGAATGGCCTGGACACACTTATGATTTGTT 591
||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 301 GGTAAATCAGATCTTGCGTGAGCTCAGCAGGGAATGGCCTGGACACACTTATGATTTGCT 360
Query 592 GTCAAAAAATTGCAATCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGAT 651
||| ||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||
Sbjct 361 GTCCAAAAATTGCAACCACTTCTGTGATGTATTATGTGACCGGCTTGGTGTGCCAAAGAT 420
Query 652 CCCAGGTTGGGTTAATCGCTTTGCTAATGCTGGGGACACAGCCTTGGAAGTGGCAGGAAA 711
|||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||
Sbjct 421 CCCAGGTTGGGTGAATCGTTTTGCTCATGCTGGCGACACAGCCTTGGAAGTGGCAGGAAA 480
Query 712 CACAGCAATGCGGATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAGTGGCTTA 771
||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 CACAGCAATGCGGGTAAAGCAAGCCAAAACTGAACTCGTGTCAGCTAGTAAAGTGGCTTA 540
Query 772 TCGCTTCCTCTCGAATGTTACTTCGAAC---------G-T---AA---CC--AATGGCTC 813
||||||||| ||||||||||| |||||| | | || || ||||||||
Sbjct 541 TCGCTTCCTTTCGAATGTTACCTCGAACATAACCAATGGTTCGAATGGCCCCAATGGCTC 600
Query 814 CAATGGCTCTCCACAACGACCGGGAACTCTCAACAATTCAGACAGCGGGAACTTGAGATT 873
|||||||||||||||||| || |||||||||||||||||||||| |||||||| |||||
Sbjct 601 CAATGGCTCTCCACAACGGCCAGGAACTCTCAACAATTCAGACAATGGGAACTTTAGATT 660
Query 874 GCAAGGTAGTTGGCTCAAAGGCT-TACTTAACACAGCCAAACCCTCCACTAGTACAGAGA 932
||||||||||||| | ||||| | |||||||||| |||||||||||||| ||||||||||
Sbjct 661 GCAAGGTAGTTGGTTGAAAGG-TATACTTAACACTGCCAAACCCTCCACAAGTACAGAGA 719
Query 933 TAGGGAACAAAGATGAAGATGCAAATCATGCAGTCACCAATCAGAAGAAA-CAAAGCCGT 991
||||||||||||| ||||||||||||||| || || | |||||||| ||| |||||||||
Sbjct 720 TAGGGAACAAAGAGGAAGATGCAAATCATACAATCGCGAATCAGAA-AAAGCAAAGCCGT 778
Query 992 GACTCTGATGTTCTACTGTTTCAGTAGCAACCGTACCGATCCACC 1036
|||||||||| |||||| ||||||||||||| |||| ||||||||
Sbjct 779 GACTCTGATGCTCTACTATTTCAGTAGCAACTGTACTGATCCACC 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5