BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25692.1
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492255 jgi|Araly1|492255|fgenesh2_kg.7__1688__AT4G25690.1 1491 0.0
Ahg492259 jgi|Araly1|492259|fgenesh2_kg.7__1692__AT4G25670.1 893 0.0
> Ahg492255 jgi|Araly1|492255|fgenesh2_kg.7__1688__AT4G25690.1
Length=1432
Score = 1491 bits (807), Expect = 0.0
Identities = 920/975 (94%), Gaps = 6/975 (1%)
Strand=Plus/Plus
Query 507 GGCTTATCTGTTTCTCCTTTGCAACTACTATAAGCTAATCAAGTAATCGTCAATGCAGAA 566
||||| | |||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 426 GGCTTCTGTGTTTCTCCTTTGCAACTTCTAAAAGCTAATCAAGTAATCGTCAATGCAGAA 485
Query 567 AATGGGAGAGTCTACGGGGTGTGGGAAAGGAGGACTAATGATTCCAAATCATAAGTCTGC 626
||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 486 AATGGGAGAGTCTACTGGGTTTGGGAAAGGAGGACGAATGATTCCAAATCATAAGTCTGC 545
Query 627 TAATTCTTATAACCTCTCCCTTGAGTTGTCTCTTGTTGACTCTGTTTGGGATTGTAATGT 686
||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 546 AAATTCCTATAACCTCTCCCTTCAGTTGTCTCCTGTTGACTCTGTTTGGGATTGTATTGT 605
Query 687 TCGGACCATGAGGTATTCCTATATACCTGAGTGGTTGTAGTCTTTGAAATCCTCTTAGAC 746
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 606 TCGGACCATGAGGTATTCCTATATACCTGAGTGGTTGTAGTCTTTGAAATCATCTAAGAC 665
Query 747 AACGAG-TTTAGTGCATTTTACTTTAGTTGGAATCAAAGAGTTATAGCAAGCAATAATGG 805
|||||| ||||||||||||||| |||||| |||| | ||||||||| |||||||||||||
Sbjct 666 AACGAGTTTTAGTGCATTTTAC-TTAGTTAGAATTATAGAGTTATACCAAGCAATAATGG 724
Query 806 ATCACACGTTGTGCAAGCAAGTTGTTCAGCCAGTTACTAGGAAAGTGAAGAAGCATGGTA 865
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 ATCACACGGTGTGCAAGCAAGTTGTTCAGCCAGTTACTAGGAAAGTGAAGAAGCATGGTA 784
Query 866 AAGATGAATTTGATCGTATCAAACAAGCTGAGAAGAAAAAGAGACGTTTGGAGAAAGCTC 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 AAGATGAATTTGATCGTATCAAACAAGCTGAGAAGAAAAAGAGACGTTTGGAGAAAGCTC 844
Query 926 TTGCTACTTCTGCAGCCATTCGGGCTGAGCTTGAAAAGAAGAAGCAGAAGAGATTGGAAG 985
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 845 TTGCTACTTCTGCAGCCATCCGGGCTGAGCTTGAAAAGAAGAAACAGAAGAGATTGGAAG 904
Query 986 AACAACAAAGGTTAGATGAAGAAGGAGCTGCAATTGCAGAAGCTGTCGCTCTGCACGTCC 1045
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 AACAACAGAGGTTAGATGAAGAAGGAGCTGCAATTGCAGAAGCTGTCGCTCTGCACGTCC 964
Query 1046 TACTGGGCGAAGATTCTGATGATTCATCTCGAGTCAAGTTTGGCGAAGAAACGGGTTTCG 1105
||||||||||||||||||||||||||||||| | || | |||| ||||||| |||||||
Sbjct 965 TACTGGGCGAAGATTCTGATGATTCATCTCGGGCCATGCTTGGTGAAGAAAAGGGTTTCA 1024
Query 1106 GAATGGATCTGTTTAGAGATGAAAGAACCAACTATGTTCCTCGCCAAAGTTGTGCTAGCT 1165
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1025 CAATGGATCTGTTTAGAGATGAAAGAACCAACTATGTTCCTCGCCAGAGTTGTGCTAGCT 1084
Query 1166 ATGCGGTTCAAGGGATTGGGTTTGTGTCAAATGGTTATGGACTAGGAGATAGTAACTGGT 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1085 ATGCGGTTCAAGGGATTGGGTTTGTGTCAAATGGTTATGGACTAGGAGATAGTAATTGGT 1144
Query 1226 CAGTGTCATATAAGCCATTCATGAAGGATGTCTGGGATAACAACATGGTAATATCTGCAG 1285
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
Sbjct 1145 CAGTGTCATATAAGCCATTCATGAAGGATGTTTGGGATAGCAACATGGTAATATCTGCGG 1204
Query 1286 ATTTGATTGCTGCTCAGGCTGTTTCGTCACTACAGATATCTGAGGACGCTGATAGGAACG 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 ATTTGATTGCTGCTCAGGCTGTTTCGTCACTACAGATATCTGAGGACGCTGATAGGAACG 1264
Query 1346 C-TTATGTCTTCGAGACGATGTTCGGGGGATGACAAAAGCCATCGTGCCAAACTTGGCTG 1404
| || ||||||||| || |||||| ||||||||||||||| | || ||||| |||||||
Sbjct 1265 CGTT-TGTCTTCGAAACAATGTTCCAGGGATGACAAAAGCCGTGGTTCCAAATTTGGCTG 1323
Query 1405 CAGAAACAAGTGTTTGCTATGAGTAGAGTTGCAGtttttttCT-TTATTCTAGAACCCCT 1463
|||||| ||||||||||||| || |||||||||| ||| |||| || |||||||| ||||
Sbjct 1324 CAGAAAGAAGTGTTTGCTATTAGAAGAGTTGCAGCTTTATTCTCTT-TTCTAGAAGCCCT 1382
Query 1464 TTTGGTGTGAAAATT 1478
|||||||||||||||
Sbjct 1383 TTTGGTGTGAAAATT 1397
Score = 514 bits (278), Expect = 8e-145
Identities = 388/437 (89%), Gaps = 24/437 (5%)
Strand=Plus/Plus
Query 1 TCCAGAAAGCTACGTTTCTCTTTCTCTCTTTGTATTATCCGATTAAATTTTAGAGTAGTT 60
||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 2 TCCAGAAAGCTACGTTTCTCTCTCTCTCTCTGTATTATCCGATTAAA--TTAGAGTAGTT 59
Query 61 CTTTGAGTCAGCTGCTTCTATGCCATTTTCTAGAGGTTTGGATCC-A----A--TT--TC 111
||||||| |||||||||||||||||||||||| |||||||||||| | | || ||
Sbjct 60 CTTTGAGGCAGCTGCTTCTATGCCATTTTCTAAAGGTTTGGATCCAATTTCATCTTCATC 119
Query 112 ATCATCTTGTTGATCCGTTTATCTTCAATTTCCATAGATTTTTTCTAATTGAATTGACTT 171
|||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 120 ATCATCTTGTTGATCCGTTTATCTTCAATTTCCATAGA----TT-T--TTGAATTGACTT 172
Query 172 CTTTCGAGAAAAG-TTTTTCGAGCAGTTTCATTTGTTCATCAGATTTAATGCTTAATTAT 230
||||||||||||| |||||||| || ||||||||||| |||||||||||| ||||||||
Sbjct 173 CTTTCGAGAAAAGTTTTTTCGATTAGCTTCATTTGTTCCTCAGATTTAATGGTTAATTAT 232
Query 231 GGGTTTCTGAGGCAGATCTGGTCACTCTCGATTGATTGCTTCTA-GTTTGCA-TCCATTG 288
|||||| |||||||||||| ||| || ||||||||||||||||| | ||||| | |||||
Sbjct 233 GGGTTTTTGAGGCAGATCTTGTCTCTGTCGATTGATTGCTTCTAGGCTTGCACTTCATTG 292
Query 289 AAATGATCAGGCATTAGCTTGTTTGTTGTATCTTCTATCTTGTGTTATTGTTGACTGTTG 348
|||| ||||||| ||||||||||| |||||||||||||||| || |||||||||||||
Sbjct 293 AAATTATCAGGCTTTAGCTTGTTTAATGTATCTTCTATCTTGCCTTGTTGTTGACTGTTG 352
Query 349 AAATCGTTAGTTGATTTATGTTTGACCACTTTCTTTGGACTTGGTGTCTTTTTATGTTCC 408
||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 353 AAATCGTTA---GATTTATGTTTGACCACTTTCTTTGGACTTGGTGTCTTTTTAAGTACC 409
Query 409 TTGAATAAAGTGGAATG 425
||||||||||||| |||
Sbjct 410 TTGAATAAAGTGGCATG 426
> Ahg492259 jgi|Araly1|492259|fgenesh2_kg.7__1692__AT4G25670.1
Length=1201
Score = 893 bits (483), Expect = 0.0
Identities = 728/839 (87%), Gaps = 46/839 (5%)
Strand=Plus/Plus
Query 563 AGAAAATGGGAGAGTCTACGGGGTGTGGGAAAGGAGGACTAATGATTCCAAATCATAAGT 622
|||||||||| ||||||| |||||| ||||| | |||| |||||||||||| ||||||
Sbjct 192 AGAAAATGGGCGAGTCTAAGGGGTGCGGGAATGTTGGACGAATGATTCCAAAGAATAAGT 251
Query 623 CTGCTAATTCTTATAACCTCTCCCTT-GAGTTGTCTCTTGTTGACTCTGTTTGGGATTGT 681
||||||| ||||||||| |||| ||| | |||||| | ||||| ||| |||||||||||
Sbjct 252 CTGCTAACTCTTATAACGTCTCTCTTCG-GTTGTCGCCTGTTGTTTCTTTTTGGGATTGT 310
Query 682 AATGTTCGGACCATGAGGTATTCCTATATACCTGAGTGGTTGTAG-TCTTTGAAATCCTC 740
| ||| || ||||||||||||||||||||||| |||||| ||||| || |||| | |||
Sbjct 311 ATTGTCCGCACCATGAGGTATTCCTATATACCAGAGTGGGTGTAGTTC-TTGAGTTACTC 369
Query 741 TTA-GACA--A-CGAGTTTAGTGCATTTTACTTTAGTTGGAATCAAAGAGTTATAG-CAA 795
|| |||| | ||||||||||||| ||| ||||| | | ||| |||||| |||
Sbjct 370 -TACGACATCATCGAGTTTAGTGCA-GTTATTTTAG-T----T---AGAATTATAGTCAA 419
Query 796 GCAATAATGGATCACACGTTGTGCAAGCAAGTTGTTCAGCCAGTTACTAGGAAAG---TG 852
|||||||||||||||||| ||||||||||| ||||||||||| |||||||| |
Sbjct 420 GCAATAATGGATCACACGGTGTGCAAGCAA---GTTCAGCCAGTCGTTAGGAAAGCAAGG 476
Query 853 AAGAAGCATGGTAAAGATGAATTTGATCGTATCAAACAAGCTGAGAAGAAAAAGAGACGT 912
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAGAAACATGGTAATGATGAATTTGATCGTATCAAACAAGCTGAGAAGAAAAAGAGACGT 536
Query 913 TTGGAGAAAGCTCTTGCTACTTCTGCAGCCATTCGGGCTGAGCTTGAAAAGAAGAAGCAG 972
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 537 TTGGAGAAAGCTCTTGCTACTTCTGCAGCCATCCGGGCTGAGCTTGAAAAGAAGAAGCAG 596
Query 973 AAGAGATTGGAAGAACAACAAAGGTTAGATGAAGAAGGAGCTGCAATTGCAGAAGCTGTC 1032
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAGAGATTGGAAGAACAACAGAGGTTAGATGAAGAAGGAGCTGCAATTGCAGAAGCTGTC 656
Query 1033 GCTCTGCACGTCCTACTGGGCGAAGATTCTGATGATTCATCTCGAGTCA-AGTTTGGCGA 1091
|||||||||||||||||||||||||||||||||||||||||||| | || | || || ||
Sbjct 657 GCTCTGCACGTCCTACTGGGCGAAGATTCTGATGATTCATCTCGGGCCATACTT-GGTGA 715
Query 1092 AGAAACGGGTTTCGGAATGGATCTGTTTAGAGATGAAAGAACCAACTATGTTCCTCGCCA 1151
||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AGAAAAGGGTTTCACAATTGATCTGTTTAGAGATGAAAGAACCAACTATGTTCCTCGCCA 775
Query 1152 AAGTTGTGCTAGCTATGCGGTTCAAGGGATTGGGTTTGTGTCAAATGGTTATGGACTAGG 1211
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GAGTTGTGCTAGCTATGCGGTTCAAGGGATTGGGTTTGTGTCAAATGGTTATGGACTAGG 835
Query 1212 AGATAGTAACTGGTCAGTGTCATATAAGCCATTCATGAAGGATGTCT-GGGATAACAACA 1270
||||||||||||||| | ||| | | | | ||| ||| || ||||||||||||
Sbjct 836 AGATAGTAACTGGTC-GC--CAT-TCA-CGA-----GAA--ATG-CTTGGGATAACAACA 882
Query 1271 TGGTAATATCTGCAGATTTGATTGCTGCTCAGGCTGTTTCGTCACTACAGATATCTGAGG 1330
||| |||||| || ||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 883 TGGGAATATCAGCTGATTTGATTGCTGCTCAGGCTGTCTCGGCGCTACAGATATCTGAAA 942
Query 1331 ACGCTGATAGGAACGC-TTATGTCTTCGA-GACGATGTTCGGGGGATGACAAAA-GCCA 1386
| ||||| ||||||| || ||| ||| | | ||||||| |||| |||||||| ||||
Sbjct 943 ATGCTGACGGGAACGCCTT-TGTGTTCAATGG-GATGTTCCGGGGTTGACAAAATGCCA 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5