BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25700.1
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492254 jgi|Araly1|492254|fgenesh2_kg.7__1687__AT4G25700.1 1639 0.0
> Ahg492254 jgi|Araly1|492254|fgenesh2_kg.7__1687__AT4G25700.1
Length=1159
Score = 1639 bits (887), Expect = 0.0
Identities = 1062/1142 (93%), Gaps = 30/1142 (3%)
Strand=Plus/Plus
Query 70 ATGGCGGCAGGACTCTCAACCGCCGTTACATTCAAACCACTCCACCGCTCTTTCTCCTCC 129
||||||| |||||||||||||||||||||||||||||| ||||||||||| | | | |
Sbjct 43 ATGGCGGTAGGACTCTCAACCGCCGTTACATTCAAACCTCTCCACCGCTC--T-T--T-C 96
Query 130 TCCTCTACCGATTTCCGACTCCGCCTCCCGAAATCCTTATCCGGATTCTCTCCGTCTCTT 189
| | || |||||||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 97 T-C-CT-CCGATTTCCGCCTCCGCCACCCAAAATCCTTATCCGGATTCTCTCCGTCTCTT 153
Query 190 CGATTTAAACGCTTTTCTGTCTGTTACGTCGTCGAAGAACGGAGACAGAATTCTCCGATT 249
||||||||| ||||||||||||||| |||||| || || || |||||||| |||||||||
Sbjct 154 CGATTTAAAGGCTTTTCTGTCTGTTTCGTCGTGGAGGAGCGAAGACAGAACTCTCCGATT 213
Query 250 GAGAACGATGAGA-GACCGGAGAGCACGAGCTCCACAAACGCTATAGACGCTGAGTATCT 308
||||||||||| | ||||||||||||||||||| || | ||| |||||||| ||||||||
Sbjct 214 GAGAACGATGA-ACGACCGGAGAGCACGAGCTCAACCACCGCCATAGACGCCGAGTATCT 272
Query 309 GGCGTTGCGTTTGGCGGAGAAATTGGAGAGGAAGAAATCGGAGAGGTCCACTTATCTAAT 368
|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 273 CGCGTTGCGATTGGCGGAGAAATTGGAAAGGAAGAAATCAGAGAGGTCCACTTATCTAAT 332
Query 369 CGCTGCTA-TGTTGTCGAGCTTTGGTATCACTTCTATGGCTGTTATGGCTGTTTACTACA 427
|||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 CGCTGC-AGTGTTGTCAAGCTTTGGTATCACTTCTATGGCTGTTATGGCTGTTTACTACA 391
Query 428 GATTCTCTTGGCAAATGGAGGGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACATTTG 487
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 392 GATTCTCTTGGCAAATGGAGGGAGGTGAGATCTCAATGTTGGAGATGTTTGGTACATTTG 451
Query 488 CTCTCTCTGTTGGTGCTGCTGTTGGTATGGAATTCTGGGCAAGATGGGCTCATAGAGCTC 547
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 452 CTCTCTCTGTTGGTGCTGCGGTTGGTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTC 511
Query 548 TGTGGCACGCTTCTCTATGGAATATGCATGAGTCACATCACAAACCAAGAGAAGGACCGT 607
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 TCTGGCACGCTTCTCTATGGAATATGCATGAGTCACATCACAAACCAAGAGAAGGACCGT 571
Query 608 TTGAGCTAAACGATGTTTTTGCTATAGTGAACGCTGGTCCAGCGATTGGTCTCCTCTCTT 667
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 572 TTGAGTTAAACGATGTTTTTGCTATAGTGAACGCTGTTCCAGCGATTGGTCTCCTCTCTT 631
Query 668 ATGGATTCTTCAATAAAGGACTCGTTCCTGGTCTCTGCTTTGGCGCCGGGTTAGGCATAA 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 632 ATGGATTCTTCAATAAAGGACTCGTTCCTGGTCTCTGCTTTGGCGCCGGGTTAGGAATAA 691
Query 728 CGGTGTTTGGAATCGCCTACATGTTTGTCCACGATGGTCTCGTGCACAAGCGTTTCCCTG 787
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 692 CGGTGTTTGGAATCGCCTACATGTTTGTCCACGATGGTCTGGTGCACAAGCGTTTCCCTG 751
Query 788 TAGGTCCCATCGCCGACGTCCCTTACCTCCGAAAGGTCGCCGCCGCTCACCAGCTACATC 847
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 752 TAGGTCCCATCGCCGACGTCCCTTACCTCCGGAAGGTCGCCGCCGCTCACCAGTTACATC 811
Query 848 ACACAGACAAGTTCAATGGTGTACCATATGGACTGTTTCTTGGACCCAAGGAATTGGAAG 907
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 ACACAGACAAATTCAATGGTGTACCATATGGACTGTTTCTTGGACCCAAGGAATTGGAAG 871
Query 908 AAGTTGGAGGAAATGAAGAGTTAGATAAGGAGATTAGTCGGAGAATCAAATCATACAAAA 967
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 872 AAGTTGGAGGAAATGAAGAGTTAGATAAGGAGATTAGTCGGAGAATCAAATCGTACAAAA 931
Query 968 AGGCCTCGGGCTCCGGGTCGAGTTCGAGTTCTTGACTTTAAACAAGTTTTAAATCCCAAA 1027
||||||| || |||||||| | | |||||||||| |||||||||||||||||||||
Sbjct 932 AGGCCTCCGGTTCCGGGTCCA---C---TTCTTGACTTCAAACAAGTTTTAAATCCCAAA 985
Query 1028 TTC-tttttttGTCTTCTGTCATTATGATCATCTTAAGACGGTCTATGTTGATAAATCCT 1086
||| |||||||||||||||| | || |||||| ||||||||||||||||||||||||||
Sbjct 986 TTCGTTTTTTTGTCTTCTGT--T-ATCATCATCCTAAGACGGTCTATGTTGATAAATCCT 1042
Query 1087 ATATGCCGATTTTGATTTTAATGAATATTTT-AAAAAATATAAATACCTCTCTTTC-TTG 1144
|||||||||||||||||||||||| |||||| |||||||||||||| ||| || ||
Sbjct 1043 ATATGCCGATTTTGATTTTAATGATTATTTTTAAAAAATATAAATAG-TCTAATTAATTA 1101
Query 1145 CAATTGTATTTGTGCGTGTAGCAAGCACTGTAGCGACGATTGACATATTACGTTGTTTGT 1204
| | | | ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1102 TA-TAGCAATTGTGCGTGTA--A-GCACTGTAGCGACGATTGACATATTACGTTGTTTGT 1157
Query 1205 TT 1206
||
Sbjct 1158 TT 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5