BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25710.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492252 jgi|Araly1|492252|fgenesh2_kg.7__1685__AT4G25710.1 1663 0.0
Ahg937812 jgi|Araly1|937812|scaffold_502003.1 370 2e-101
Ahg317684 jgi|Araly1|317684|fgenesh1_pm.C_scaffold_3000700 324 1e-87
Ahg928901 jgi|Araly1|928901|scaffold_301358.1 296 3e-79
Ahg327908 jgi|Araly1|327908|fgenesh1_pm.C_scaffold_7000135 195 1e-48
Ahg929436 jgi|Araly1|929436|scaffold_301893.1 176 4e-43
Ahg330601 jgi|Araly1|330601|fgenesh1_pm.C_scaffold_7002828 176 4e-43
Ahg921494 jgi|Araly1|921494|scaffold_102775.1 167 2e-40
Ahg478316 jgi|Araly1|478316|fgenesh2_kg.3__1017__AT3G09915.1 76.8 4e-13
> Ahg492252 jgi|Araly1|492252|fgenesh2_kg.7__1685__AT4G25710.1
Length=1389
Score = 1663 bits (900), Expect = 0.0
Identities = 1230/1381 (89%), Gaps = 55/1381 (4%)
Strand=Plus/Plus
Query 19 GGAGAGACAACGACGTCGTCGAACATgaagaagaagaagaa-gaag--G-TGTCG---TC 71
||| |||||||| |||||||||||| ||||| |||| | || | | | | || ||
Sbjct 41 GGA-AGACAACGTCGTCGTCGAACAAGAAGAGGAAG-ACAACGCCGTCGACGCCGCAATC 98
Query 72 GACAACAAATCCGTCACTTCCCGATGATTTGGTATTGGTCATCATCGCACGCGTCTCAAT 131
|||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 99 GACACCAAATCCGTCACTTCCCGATGATTTGCTATTGCTCATCATCGCACGCGTCCCAAT 158
Query 132 ATTATACTATCCTATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACC 191
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 ATTATTCTATCCGATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACC 218
Query 192 GGA-GCTTTACAAGGTCAGGTCACTCTTGGGCCGCAGGGAGAGTCGTCTCTATGTGTGCA 250
|| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 -GAGGCTTTACAAGGCCCGGTCACTCTTGGGCCGCAGGGAGAGTCGTCTCTATGTGTGCA 277
Query 251 TAAATATGTATTCTTATAAAAACGGCCCTAGCTGGTTCACCCTCTGCCGGAAACCGGATC 310
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 278 TAAATATGTATCCTTATAAAAACGGCCCTAGCTGGTTCACCCTCTGCCGGAAACCTGACC 337
Query 311 GAACAACAACCAGTAGTAATAAGGAGGAGGACAGGTCAAGTGGTTATGTCTTGGCAAGAA 370
| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 338 G---AACAACCAGTAGTAATAAGGAGCAGGACAAGTCAAGTGGTTATGTCTTGGCAAGAG 394
Query 371 TCCCAATTCCCCATTCTCCTTTGACTCAGAGAT-ATAGCCTCGCGGCGGTTGGTTCTAAT 429
| ||||||||||||||||||||| ||||| ||| ||||||||| ||||||||||||| ||
Sbjct 395 TTCCAATTCCCCATTCTCCTTTGTCTCAG-GATAATAGCCTCGTGGCGGTTGGTTCTGAT 453
Query 430 ATCTATAACATTGGCGT-AACCAGATACC-ACCATTTGACCTCCTCTAGTGTCTGGGTTC 487
||||||||||||||||| || ||| || | | | ||||||||||||||||| |||
Sbjct 454 ATCTATAACATTGGCGTGGTCC-GAT-CCTGCGAAGCGTCCTCCTCTAGTGTCTGGATTC 511
Query 488 TGGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGCTATTTAGAG 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 512 TGGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGCTATTTACAG 571
Query 548 TTTCTGTTAGCGTCCTTGATCAAAAGATATATGTAGCAGGGTTACACCAAGAAGATGGCT 607
|| ||||||| |||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 572 TTACTGTTAGTGTCCTTGATCAAAAGATATATGTAGCAGGGATATGCCTAGAAGATGGCT 631
Query 608 CGGATTCCTTGA---AGAACTCGGTTACGGTGTTGGACACAGAAACACAAGTAAGTGATC 664
||||||||| | |||||||| | ||||||||||||||| ||||||||||||||| ||
Sbjct 632 CGGATTCCTCCACGCAGAACTCGCTCACGGTGTTGGACACAAAAACACAAGTAAGTGCTC 691
Query 665 GGGTGGCTATCCCATGCAGCGTGTCACAAGGCAAGGAGATCTTCATAAGCACAAGTGTTG 724
||||| ||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||
Sbjct 692 GGGTGCCTATCCCATGCAGTGTGGCACAAGGCAAGGAGATCTTCCTAAGCACATGTGTTG 751
Query 725 GCGGAAAGGTCAACCTCGTGACTGGGAGAAAGGTGGTTGATTACAATCCAGTGGAAGGTA 784
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 752 GCGGAAAGGTCAACCTCGTTACTGGGAGAGAGGTGGTTGATTACAATCCAGTGGAAGGTA 811
Query 785 GCTGGGAGGAGGTTGGAGATACCATGTGTGAGTTTATGTTTTCAAAATGTTTTTGCGTGG 844
||||||||||||||||||| ||||||||| | ||||||||| | |||||||||||||||
Sbjct 812 GCTGGGAGGAGGTTGGAGAAACCATGTGTCAATTTATGTTTGCTGAATGTTTTTGCGTGG 871
Query 845 TTGGTAATGTTTTGTACTCATGTGCTATTGACCGAGTGTTCAGATGGTATGACACTGAGG 904
||| ||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct 872 TTGATAATGTTTTGTACTCGTGTGCTATTGACCGAGTGTTCAGATGGTATCACGCTGAGG 931
Query 905 TAAGAACATGGAGAAATTTGGAGTGTTTGATAGGAGGACGACTACCCAAGTTATCTCCGC 964
||||||| ||||||||||||||| ||||| ||||| | ||||| |||||||||| |
Sbjct 932 TAAGAACGTGGAGAAATTTGGAGGGTTTGGTAGGA---C---TACCCGAGTTATCTCC-C 984
Query 965 G-TGCTTTTGTTAGTTTGGCTGATTATGGTGGAAAGCTCGCTGTTTTTTGGAACCAAGGT 1023
| |||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 985 GATGCTTTTGTTAGATTGGCTGATTATGGTGGAAAGCTCGTTGTTTTGTGGAACCGTGGT 1044
Query 1024 GT-CGGC-GATTGGCAGATGCTTTGGTGTGCAGTGATTGCGCTTGAAAGGCGCAATACTT 1081
| |||| | |||| |||||||||| ||||| | |||| |||||||||||||||||||||
Sbjct 1045 -TACGGCCG-TTGGAAGATGCTTTGCTGTGCCGAGATTTCGCTTGAAAGGCGCAATACTT 1102
Query 1082 GTGAAATTTTGGGGAATGTTGAGTGGTCTGATCATGTGCTTCA-TGTCCCTAAGATACGT 1140
||||||||| |||||| |||||||||| ||||||||| ||| | ||||||| | || ||
Sbjct 1103 GTGAAATTTGGGGGAAAGTTGAGTGGTTTGATCATGTCCTT-AGTGTCCCTGGGTTA-GT 1160
Query 1141 T-CTT-ACTACAACGCTCTTTCTGCTACTCTCTGAG-ATGAATGTGTCAGTATGCTTGAA 1197
| ||| | ||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1161 TTCTTTA-TACAACGCTCTTTCTGCTACTCTCTGATCATGAATGTGTCAGAATGCTTGAA 1219
Query 1198 CCGTGTCTTCATCTTTTTGTGTAACCGTTGTATTGTGGTCTTTGTTCTGTGGtattttat 1257
|||||||||| | |||| ||||| || |||||| ||||||||| |||| ||||||||||
Sbjct 1220 CCGTGTCTTC-T-TTTT-GTGTACCC-TTGTATGGTGGTCTTTATTCTATGGTATTTTA- 1274
Query 1258 g-atttattggctttgatttcgattttatttagtttatttgattgtttgtcttgctcttt 1316
| |||||||||||||||||||||||| |||||||||||| ||| | ||||||||||||
Sbjct 1275 GCATTTATTGGCTTTGATTTCGATTTG-TTTAGTTTATTT-ATT-T--GTCTTGCTCTTT 1329
Query 1317 tgGCTCGGTAGTTTAAGATCCTTTTGTAAAGAGACG-ATTGGAATAAACAAGTATCCTAT 1375
||| ||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 1330 TGGTTCGTTAGTTTAAGATCCTTTTGTAAAGAGA-GTATTGGAATGAACAAGTATCCTAT 1388
Query 1376 T 1376
|
Sbjct 1389 T 1389
> Ahg937812 jgi|Araly1|937812|scaffold_502003.1
Length=1200
Score = 370 bits (200), Expect = 2e-101
Identities = 419/520 (81%), Gaps = 33/520 (6%)
Strand=Plus/Plus
Query 83 CGTCACTTCCCGATGATTTGGTATTG-GTCATCATCGCACGCGTCTCAATATTATACTAT 141
|||||||||||||||||||| ||||| || | | ||||| ||||||| ||| ||||||
Sbjct 75 CGTCACTTCCCGATGATTTGATATTGAGTTGT-GTGGCACGGGTCTCAAGATTGTACTAT 133
Query 142 CCTATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACCGGAGCTTTAC 201
|| | |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 134 CCGACTCTCTCTCTCGTCTCCAAGAGCTTTCGATCACTCCTGGCTTCACCGGAGCTTTAC 193
Query 202 AAGG-TCAGGTCACTCTTGGGCCGCAGGGAGAGTCGTCTCTATGTGTGCATAAA-TATGT 259
|||| | || ||||||||||| |||| ||||||| |||||||||| ||| ||| | ||
Sbjct 194 AAGGCT-AGATCACTCTTGGGACGCACGGAGAGTTGTCTCTATGTTTGCTTAAGGT-TG- 250
Query 260 ATTC-TTATAAAAACGGCCCTAGCTGGTTCACCCTCTGCCGGAAACCGGATCGAACAAC- 317
| | || ||||| | | ||||||||||||||||||||||||||| ||| ||| |
Sbjct 251 ACACCTTTTAAAA--G-CAATAGCTGGTTCACCCTCTGCCGGAAACCTCATCAAACC-CT 306
Query 318 AACCAGTA-GTAATAAGGAGGAGGACAGGTCAAGTGGTTATGTCTTGGCAAGAATCCCAA 376
|||||||| | || || | || | || |||||||| ||||| ||||||| | ||||||
Sbjct 307 AACCAGTAAG-AAGAAA-A--AG-A-AG-TCAAGTGGGTATGTTTTGGCAACAGTCCCAA 359
Query 377 TTCCCCATTCTCCTT-TGACTCAGA-GATATAGC-CTCGCGGCGGTTGGTTCTAATATCT 433
| |||||||||||| || | || | | || |||| ||| ||||||||| ||||||
Sbjct 360 TCCCCCATTCTCCTCGTG-CGCACTTG-TC-AGGTCTCGTGGCTGTTGGTTCTGATATCT 416
Query 434 ATAACATTGGCGTAACCAGATAC--C-ACCATTTGAC-C--TCCTCTAGTGTCTGGGTTC 487
| |||||||||| | |||| | | || | | | | |||||||| |||||| |||
Sbjct 417 ACAACATTGGCGGATGCAGAAAAATCTACGAAACGCCGCCCTCCTCTAGCGTCTGGATTC 476
Query 488 TGGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGCTATTTAGAG 547
|||||||| ||||||||| |||||| |||||||||||||||||||||||| | | |||
Sbjct 477 TGGATTGCATGTCTCACACATGGCGCGAGGCTCCAAGCTTGCCGGTGGAGCCAATGAGAC 536
Query 548 TTTCTGTTAGCGTCCTTGATCAAAAGATATATGTAGCAGG 587
|||||| ||||||||||||| ||||||||||||||||||
Sbjct 537 TTTCTGCTAGCGTCCTTGATGGAAAGATATATGTAGCAGG 576
> Ahg317684 jgi|Araly1|317684|fgenesh1_pm.C_scaffold_3000700
Length=1047
Score = 324 bits (175), Expect = 1e-87
Identities = 431/546 (79%), Gaps = 52/546 (10%)
Strand=Plus/Plus
Query 70 TCGACAACAAATCCGTCACTTCCCGATGATTTGGTATTG-GTCATCATCGCACGCGTCTC 128
||||| |||| ||||||||||||||||||||| ||||| | |||| |||||||||| ||
Sbjct 52 TCGACTCCAAACCCGTCACTTCCCGATGATTTGCTATTGAG-CATCTTCGCACGCGTGTC 110
Query 129 AATATTATACTATCCTATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTC 188
|| |||||||||||||| |||| ||| || | ||||||||||||||||| |||||
Sbjct 111 AAGATTATACTATCCTA--CTCT--CTC-ACT-C---AGCTTTCGATCTCTCCTAGCTTC 161
Query 189 ACCGGAGCTTTACAAGGTCAGGTCACTCTTGGGC-CGCAGGGAGAGTCGTCTCTATGTGT 247
||| ||||||||||||| |||||||||| | ||| || |||||| |||||||||| |
Sbjct 162 ACCAGAGCTTTACAAGGCCAGGTCACTC-TCGGCAAACACCGAGAGTTGTCTCTATGTAT 220
Query 248 GCATAAATA-TGTATTCTTATAAAAACGGCCCTAGCTGGTTCACCCTCTGCCGGAAACCG 306
|| | || || | || | || | ||||||||||||||||||| |||||
Sbjct 221 GC-T---TACGGTGCTGTTCT------GGTTATCGCTGGTTCACCCTCTGCCGTAAACCT 270
Query 307 GATCGAACAACAACCAGTAGTAATAAGGAGGAGGACAGGTCAAGTGGTTATGTC-TTGGC 365
|||| ||| | ||||| | ||||||||| ||||| | |||||||||||||| | |||||
Sbjct 271 GATCAAACCATAACCA--A-TAATAAGGA-GAGGA-A-GTCAAGTGGTTATG-CTTTGGC 323
Query 366 AAGAATCCCAATTCCC---CATTCTCCT-TTGACTCAGAGAT-AT--AGCCTCGCGGCGG 418
||| ||||||||||| ||||||| || | | ||| | || |||| ||| |
Sbjct 324 TAGAGTCCCAATTCCCGGTGGTTCTCCTAATG--T-A-CGATCTTCGAGTCTCGTGGCCG 379
Query 419 TTGGTTCTAATATCTATAACATTGGCGTAACCA-GATAC-CACCATTTGACCTCCTCTAG 476
|||||||| ||||||| |||||| ||| | ||| | || | | | ||||||||||
Sbjct 380 TTGGTTCTGATATCTACAACATTTGCGGATCCATCA-ACAAAGC-GTCCCCCTCCTCTAG 437
Query 477 TGTCTGGGTTCTGGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCTTGCCGGTGGA 536
|||| | ||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 438 CGTCTCGATTCTGGATTGCCGGTCTCACAAGTGGCGAGAGGCTCCAAGCTTGCCGGTGGA 497
Query 537 GCTAT-TTAGAGTTTCTGTTAGCGTCCTTGATCAAAAGATATATGTAGCAGGGT--TACA 593
||||| || |||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 498 GCTATGTT-CAGTTTCTGCTAGCGTCCTTGATCAAAAGATATATGTAGCAGGATGCTACA 556
Query 594 -CCAAG 598
|||||
Sbjct 557 ACCAAG 562
Score = 97.1 bits (52), Expect = 3e-19
Identities = 159/208 (76%), Gaps = 17/208 (8%)
Strand=Plus/Plus
Query 817 TTTATGTTTTCAAAATGTTTTTGCGTGGTTGGTAATGTTTTGTACTCATGTGCTAT-TGA 875
|||||||||||| | | || ||||| | | | ||| ||||||||||| | | ||| ||
Sbjct 676 TTTATGTTTTCAGATTCTTATTGCGAGATAGATAACGTTTTGTACTC-T-T--TATCCGA 731
Query 876 CCGAGTGTTCAGATGGTATGACACTGAGGTAAGA-ACATGGAGAA-ATTTGGAGTG-TTT 932
||| |||||||||||||||||||||||||||| | |||| || ||||| | || |||
Sbjct 732 TGGAGCGTTCAGATGGTATGACACTGAGGTAAGAGAG-TGGA-AAGATTTGAA-TGGTTT 788
Query 933 GATAGGAGGACGACTACCCAAGTTATCTCCGCGTGCTTTTGTTAGTTTGGCTGATTATGG 992
| | || | | || ||||| ||| | |||||| |||||| ||||||||||||||
Sbjct 789 GTTTC-AG--C---TGCCTAAGTTCTCTGCTAGTGCTTGTGTTAGATTGGCTGATTATGG 842
Query 993 TGGAAAGCTCGCTGTTTTTTGGAACCAA 1020
||||||| | || || || ||| |||||
Sbjct 843 TGGAAAGATGGCGGTCTTGTGGGACCAA 870
> Ahg928901 jgi|Araly1|928901|scaffold_301358.1
Length=1293
Score = 296 bits (160), Expect = 3e-79
Identities = 401/512 (78%), Gaps = 37/512 (7%)
Strand=Plus/Plus
Query 77 CAAATCCGTCACTTCCCGATGATTTGGTATTGGTCATCATCGCACGCGTCTCAATATTAT 136
||| |||||||||||||||||||||||||||| |||| ||||||||||| ||| ||| |
Sbjct 180 CAATTCCGTCACTTCCCGATGATTTGGTATTGAACATCGTCGCACGCGTCCCAAGATTGT 239
Query 137 ACTATCCTATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACCGGAGC 196
|| |||| | ||| || |||||||||||||||||||||||||| || |||||||||||||
Sbjct 240 ACCATCCGACTCTATCCCTCGTCTCCAAGAGCTTTCGATCTCTGCTAGCTTCACCGGAGC 299
Query 197 TTTACAAGGTCAGGTCACTCTTGGGCC-GCAGGGAGAGTCGTCTCTATGTGTGCATAAAT 255
|||||||||||||||| ||| | || | | |||||| |||||||||||||||| |||
Sbjct 300 TTTACAAGGTCAGGTCTCTCATAGGAAAG-ACCGAGAGTTGTCTCTATGTGTGCATCAAT 358
Query 256 ATG-TATTCTTATAAAAACGGCCCTAGCTGGTTCACCCTCTGCCGGAAACCGGATCGAAC 314
|| | ||| | || || | | ||||||||||||||||||||||| |||| |||
Sbjct 359 -TGGT-TTCCTG-AA----GGTTTTCGTTGGTTCACCCTCTGCCGGAAACCTGATCAAAC 411
Query 315 AAC-AACCAGTAGTAATAAGGAGGAGGACAGGTCAAGTGGTTATGTCTTGGCAAGAATCC 373
| ||||| | | | | || || || | | |||||||| ||||| ||||| | |||
Sbjct 412 C-CTAACCAAT-G-A-TGAGAAGAAGAA-A--TCAAGTGGGTATGTTTTGGCTTCAGTCC 464
Query 374 CAATTCCCCATTCTCCTT-TGACTCAGAGATATAGCC--TC-GC-GGCGGTTGGTTCTAA 428
|||| || || ||||| || | | ||| | || | | |||| |||||||| |
Sbjct 465 CAATGACCAATACTCCTCATG-C---G-GATTTTGCGAGTGTGGTGGCGCTTGGTTCTGA 519
Query 429 TATCTATAACATTGGCGTAACCAGA-TACCACCATTTGA--CCTCCTC-T--AGTGTCTG 482
||||||||||||||||||| ||| | | || | | || ||||||| | || ||||
Sbjct 520 TATCTATAACATTGGCGTA-CCACAAT-CCTCTAGG-GAAGCCTCCTCCTCTAGCGTCTT 576
Query 483 GGTTCTGGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGCTATT 542
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 577 TATTCTGGATTGCCGGTCTCACACTTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGCTATT 636
Query 543 TAGAGTTTCTGTTAGCGTCCTTGATCAAAAGA 574
|| || |||||| || || ||||| |||||
Sbjct 637 TACTGTCTCTGTTGGCCTCATTGATGGAAAGA 668
> Ahg327908 jgi|Araly1|327908|fgenesh1_pm.C_scaffold_7000135
Length=1131
Score = 195 bits (105), Expect = 1e-48
Identities = 362/479 (76%), Gaps = 45/479 (9%)
Strand=Plus/Plus
Query 81 TCCGTCACTTCCCGATGATTTGGT-ATTGGTCATCATCGCACGCGTCTCAATATTATACT 139
||| |||||||||| ||||||| | || || |||||||| |||||||| | ||| |||
Sbjct 81 TCCATCACTTCCCGTTGATTTGCTAATAAGT-ATCATCGCCCGCGTCTCGAGATTGGACT 139
Query 140 ATCCTATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACCGGAGCTTT 199
| || |||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 140 ACCCAATTCTCTCTCTCGTCTCCAAGAGCTTTCGATCTCTCCTTGCATCACCGGAGCTTT 199
Query 200 ACAAGG-TCAGGTCACTCTTGGGCCGCAGGGAGAG-TCGTCTCTATGTGTGCATAAA-TA 256
|| || || |||||||||| || || | ||||| | |||||||| ||||| || |
Sbjct 200 ACGAGACTC-GGTCACTCTTAGGACGTACCGAGAGCT-GTCTCTATCTGTGCTTAGGGT- 256
Query 257 TGTA-TTCTTA-TAAAAACGGCCCTAGCTGGTTCACCCTCTGCCGGAAACCGGATCGAA- 313
| || |||| | | || | || | |||||||||| |||||||| ||||| ||||||
Sbjct 257 T-TACTTCTAACTCTAA-C--CC-TCGCTGGTTCACTCTCTGCCGAAAACCTAATCGAAA 311
Query 314 C--AAC-AAC--CA-GTAGTAATAAGGAGGAGGACAGGTCAAGTGGTTATGTCT-TGGCA 366
| ||| ||| || | || || ||| | || | || ||||||| |||| | ||||
Sbjct 312 CTTAACCAACAACATGAAG-AAGAAG-ACGAATA-AGC-CAAGTGGGCATGT-TATGGCG 366
Query 367 AG-AATCCCAATTCCCCATTCTCCTT-TG-ACTCAGAGATATAGCCTCGCGGCGGTTGGT 423
| ||||||||| ||| |||||||| || || | | | | | || | ||||||||
Sbjct 367 -GCAATCCCAATGCCCAATTCTCCTCCTGTACACCGC--TCTGGTCTGGTTACGGTTGGT 423
Query 424 TCTAATATCTATAACATTGGC-G-TAACCAGATACCACCATTTGACC--TCCTCTAGTGT 479
||| |||| || ||||||||| | | ||| | | | || | |||| |||||||| ||
Sbjct 424 TCTGATATTTACAACATTGGCTGGT--CCA--T-C-ATCAAT-GACCACTCCTCTAGCGT 476
Query 480 CTGGGTTCTGGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGC 538
|| | || |||| || |||||||||||||||||| | ||||||| | ||| ||||||||
Sbjct 477 CTCGATTTTGGACTGTCGGTCTCACACGTGGCGCGAAGCTCCAAACATGCTGGTGGAGC 535
> Ahg929436 jgi|Araly1|929436|scaffold_301893.1
Length=979
Score = 176 bits (95), Expect = 4e-43
Identities = 201/250 (80%), Gaps = 15/250 (6%)
Strand=Plus/Plus
Query 345 GTCAAGTGGTTATGTCTTGGCAAGAATCCCAATTCCCCATTCTCCTTTGACT-CAGAGAT 403
||||||||| ||||| ||||| ||| ||||||||||| ||||||| ||| | || |
Sbjct 41 GTCAAGTGGGTATGTTTTGGCTAGAGTCCCAATTCCCGATTCTCC-TTGTGTGCACTTCT 99
Query 404 ATAGCCTCGCGGCGGTTGGTTCTAATATCTATAACATTGGCGTAA-CCAGATACCACCAT 462
| || | |||||||||||||||||||| |||||||||| || || ||| | |
Sbjct 100 CGGGTCTTGTAGCGGTTGGTTCTAATATCTACAACATTGGCG-AATCC--ATA--AATTT 154
Query 463 TT-GAC-CTCCTCTAGTGTCTGGGTTCTGGATTGCCGGTCTCACACGTGGCGCCAGGCTC 520
|| | | |||||| || |||| |||||||||||||||||||||||||||||| ||||||
Sbjct 155 TTCG-CTCTCCTCGAGCGTCTCTGTTCTGGATTGCCGGTCTCACACGTGGCGCGAGGCTC 213
Query 521 CAAGCTTGCCGGTGGAGCTA-TTTAGAGTTTCTGTTAGCGTCCTTGATCA-AAAGATATA 578
|||||||||||||| ||||| ||| | | |||| ||||||| ||||| | |||||||||
Sbjct 214 CAAGCTTGCCGGTGAAGCTAATTTC-ACTCTCTGCTAGCGTCTTTGAT-AGAAAGATATA 271
Query 579 TGTAGCAGGG 588
||| ||||||
Sbjct 272 TGTCGCAGGG 281
> Ahg330601 jgi|Araly1|330601|fgenesh1_pm.C_scaffold_7002828
Length=879
Score = 176 bits (95), Expect = 4e-43
Identities = 145/169 (86%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 79 AATCCGTCACTTCCCGATGATTTGGTATTG-GTCAT-CATCGCACGCGTCTCAATATTAT 136
|||||||||||||||||||||||| ||||| | | | | ||||||| ||||||| ||| |
Sbjct 22 AATCCGTCACTTCCCGATGATTTGATATTGAG-C-TGCGTCGCACGGGTCTCAAAATTGT 79
Query 137 ACTATCCTATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACCGGAGC 196
| ||||| | |||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 80 ATTATCCGACTCTCTCCCTCGTCTCCAAGAGCTTTCGATCTCTCCTAGCTTCACCAGAGA 139
Query 197 TTTACAAGGTCAGGTCACTCTTGGGCCGCAGGGAGAGTCGTCTCTATGT 245
|||||||| | | |||||||||| ||||| |||||| ||||||||||
Sbjct 140 TTTACAAGACCCGATCACTCTTGGACCGCACCGAGAGTTGTCTCTATGT 188
> Ahg921494 jgi|Araly1|921494|scaffold_102775.1
Length=1283
Score = 167 bits (90), Expect = 2e-40
Identities = 143/169 (85%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 84 GTCACTTCCCGATGATTTGGTATTGGTCAT-CATCGCACGCGTCTCAATATTATACTATC 142
|||||||||| |||||||| |||| | | | | || || ||||||| || |||||||
Sbjct 161 GTCACTTCCCTATGATTTGCTATTCAAC-TGCCTAGCCCGGGTCTCAAGGTTGTACTATC 219
Query 143 CTATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACCGGAGCTTTACA 202
| | |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 220 CCACTCTCTCCCTCGTCTCCAAGAGCTTTCGATCTCTCCTTGCTTCACCCGAGCTTTACA 279
Query 203 AGGTCAGGTCACTCTTGGGCCGCAGGGAGAGTCGTCTCTATGTGTGCAT 251
|| | | |||||||||||||||| |||||| ||||||||||||||||
Sbjct 280 GGGCCCGCTCACTCTTGGGCCGCACCGAGAGTTGTCTCTATGTGTGCAT 328
> Ahg478316 jgi|Araly1|478316|fgenesh2_kg.3__1017__AT3G09915.1
Length=921
Score = 76.8 bits (41), Expect = 4e-13
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 467 CCTCCTCTAGTGTCTGGGTTCTGGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCT 526
||||||||| |||| | ||||||||||||||||||||||||||||| ||| || |||||
Sbjct 203 CCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCTCACACGTGGCGCAAGGTTCAAAGCT 262
Query 527 TG 528
||
Sbjct 263 TG 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5