BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25720.1
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492250 jgi|Araly1|492250|fgenesh2_kg.7__1683__AT4G25720.1 1459 0.0
Ahg945397 jgi|Araly1|945397|scaffold_701626.1 202 5e-51
> Ahg492250 jgi|Araly1|492250|fgenesh2_kg.7__1683__AT4G25720.1
Length=1073
Score = 1459 bits (790), Expect = 0.0
Identities = 991/1084 (91%), Gaps = 30/1084 (3%)
Strand=Plus/Plus
Query 7 TTTAACGCATTTCTCAAAATTACGTTGCC--------AAAGTCTGGTCAGAGC----TA- 53
||||||| ||||||||||||||||||||| |||| ||||||||||| |
Sbjct 1 TTTAACGTATTTCTCAAAATTACGTTGCCAAAGAAAGAAAGACTGGTCAGAGCGAAAAAT 60
Query 54 CAAA-T---CAAATTTGACAGACTGC-AATTTCCAATCCAACGACTGCGAATGAAGTTTA 108
|||| | |||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 61 CAAAGTGAACAAATTTGACAGACGGCAAATTT-CAATCCAACGACTGCGAATGAAGTTTA 119
Query 109 ATGGCGACTAGATCGCCTTATAAGAGACAAACGAAGCGATCCATGATTCAGTCTCTTCCA 168
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 120 ATGGCGACTAGATCGCCTTATAAGAGACAAACGAAGCGATCAATGATTCAATCTCTTCCA 179
Query 169 GCTTCTTCTTCTGCATCATCTCGCCGCCGATTCATTTCTCGGAAGAGGTTCGCGATGATG 228
||||||||| ||||| || |||||||||||||||||||||||||| |||| ||||||
Sbjct 180 GCTTCTTCT---GCATC-TC--GCCGCCGATTCATTTCTCGGAAGAGGATCGCTATGATG 233
Query 229 ATTCCTCTTGCTCTCCTCTCCGGCGCCGTTTTCCTATTCTTTATGCCATTCAATAGCTGG 288
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 234 ATTCCTCTTGCTCTCTTCTCCGGCGCCGTTTTCCTATTCTTTATGCCATTCAATAGTTGG 293
Query 289 GGCCAATCATCTGGTTCTTCTCTGGATCTCTCCCATAGGATCAATGAAATTGAAGTAGTT 348
||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 294 GGCCAATCATCTGGTTCA-CT--GGATCTCTCCCATAGGATCCATGAAATTGAAGTAGTT 350
Query 349 GCTGAGTTTCCTCATGATCCGGACGCCTTTACTCAGGGTCTTCTTTATGCGGGAAACGAT 408
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 351 GCTGAGTTTCCTCATGATCCTGACGCCTTTACTCAGGGACTTCTTTATGCGGGAAACGAT 410
Query 409 ACACTGTTCGAATCCACTGGTCTATACGGGAAGTCTTCAGTGAGGAAAGTGGATCTACGA 468
|| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 411 ACCCTGTTTGAATCCACGGGTCTATATGGGAAGTCGTCAGTGAGGAAAGTGGATCTACGA 470
Query 469 ACAGGAAAGGTTGAAATTCTTGAAAAAATGGACAATACATATTTTGGAGAGGGTTTAACA 528
||||| ||||||||| || |||||||||||| ||| | || ||||||||||||||||||
Sbjct 471 ACAGGGAAGGTTGAAGTTATTGAAAAAATGGGTAATTCTTACTTTGGAGAGGGTTTAACA 530
Query 529 CTCCTTGGAGAAAGGCTCTTTCAAGTCGCATGGTTGACAAACACGGGTTTCACATATGAC 588
|||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| ||
Sbjct 531 CTCCTTGGAGAAAGACTCTTTCAAGTTGCATGGTTGACGAATACGGGTTTCACATACGAG 590
Query 589 CTTCGCAACTTAAGTAAAGTAAAACCATTTAAACATCATATGAAAGATGGATGGGGACTG 648
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 ATTCGCGACTTAAGCAAAGTAAAACCATTTAAACATCATATGAAAGATGGATGGGGACTG 650
Query 649 GCTACCGATGGAAAAGCGTTATTTGGAAGTGATGGCACTTCTACATTATATCGGATGGAC 708
|||||||||||| ||| ||| |||||||||||||||||||||||| |||| |||||||||
Sbjct 651 GCTACCGATGGAGAAGTGTTGTTTGGAAGTGATGGCACTTCTACACTATACCGGATGGAC 710
Query 709 CCTCAAACAATGAAAGTTACTGATAAGCATA-TAGTCAGATATAATGGCCGTGAGGTACG 767
|||| |||||||||||||||| ||||||| | | ||||||||||||||| |||||||||
Sbjct 711 CCTCGAACAATGAAAGTTACTAATAAGCACACT-GTCAGATATAATGGCTATGAGGTACG 769
Query 768 TTACCTTAATGAGCTCGAGTACATAAACAACGAAGTTTGGGCAAATGTGTGGCAGTCTGA 827
|||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 770 TTACCTCAATGAGCTCGAGTACATAAACAAAGAAGTATGGGCAAACGTGTGGCAGTCTGA 829
Query 828 TTGTATTGCTAGAATTTCACCCAAGGACGGATCTCTGCTTGGATGGATACTGCTTTCAAA 887
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 830 TTGTATTGCTAGAATTTCACCCAAGGACGGATCGCTGCTTGGATGGATACTGCTACCAAA 889
Query 888 ATTAAGTCGGGGATTGCTGAAATCTGGACATAGGGGTATTGATGTTTTGAATGGCATAGC 947
|||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 890 ATTAAGACAAGGATTGCTGAAATCTGGACATGGGGGTATTGATGTCTTGAATGGCATAGC 949
Query 948 ATGGGACAGTGACAAGCAACGCCTCTTTGTAACGGGGAAACTGTGGCCAAAGCTGTACCA 1007
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 950 ATGGGACAGCGACAAGCAACGCCTCTTTGTAACCGGGAAACTGTGGCCGAAGCTGTACCA 1009
Query 1008 AATCAAGCTAAAACAAGCATCAGCAAAGAGCGGAAATTATATCGAGCAACAATGCTTGGT 1067
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1010 AATCAAGCTAAAACAAGCATCAGCAAAGAGCGGAAAATATATGGAGCAACAATGCTTGGT 1069
Query 1068 ATGA 1071
||||
Sbjct 1070 ATGA 1073
> Ahg945397 jgi|Araly1|945397|scaffold_701626.1
Length=208
Score = 202 bits (109), Expect = 5e-51
Identities = 125/133 (94%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 476 AGGTTGAAATTCTTGAAAAAATGGACAATACATATTTTGGAGAGGGTTTAACACTCCTTG 535
|||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1 AGGTTGAATTTCTTGAAAAAATGGGCAATATATATTTTGGAGAGGGTTTAACACTCCTTG 60
Query 536 GAGAAAGGCTCTTTCAAGTCGCATGGTTGACAAACACGGGTTTCACATATGACCTTCGCA 595
|||||||||||| |||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 GAGAAAGGCTCTGTCAAATAGCATGGTTGACGAACACGGGTTTCACATATGACCTTCGCA 120
Query 596 ACTTAAGTAAAGT 608
||||||| |||||
Sbjct 121 ACTTAAGCAAAGT 133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5