BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25740.1 Length=848 Score E Sequences producing significant alignments: (Bits) Value Ahg492247 jgi|Araly1|492247|fgenesh2_kg.7__1680__AT4G25740.2 601 3e-171 Ahg495335 jgi|Araly1|495335|fgenesh2_kg.8__1151__AT5G52650.1 536 9e-152 > Ahg492247 jgi|Araly1|492247|fgenesh2_kg.7__1680__AT4G25740.2 Length=605 Score = 601 bits (325), Expect = 3e-171 Identities = 354/368 (96%), Gaps = 2/368 (1%) Strand=Plus/Plus Query 32 TCAAGCTCAGTGCCTC-TTTGCAGCGAAAGCTCAACCAACAAGACGATGATTATCTCAGA 90 |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| Sbjct 20 TCAAGCTCAGTGCCTCTTTTAC-GCGAAAGCTCAACCAACAAGACGATGATTATCTCAGA 78 Query 91 GAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGTATGCTTTGCTAAGAA 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 79 GAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGTATGCTTTGCTAAGAA 138 Query 151 GGATTTCAATCTCCCAAAGCATCCGTTGATTGATGTACCAAACCTGCAAGTGATTAAGCT 210 ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 139 GGATTTCAATCTCGCGAAGCATCCTTTGATTGATGTACCAAACCTGCAAGTGATTAAGCT 198 Query 211 CATGCAGAGTTTCAAGTCCAAGGAGTACGTTAGGGAGACATTTGCGTGGATGCATTATTA 270 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 199 CATGCAGAGTTTCAAGTCCAAGGAGTATGTTAGGGAGACATTTGCGTGGATGCATTATTA 258 Query 271 TTGGTTTCTGACTAATGAAGGAATTGAGTTCTTGAGAACTTATCTTAACCTTCCTTCCGA 330 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 259 TTGGTTTCTGACTAATGAAGGGATTGAGTTCTTGAGAACTTATCTTAACCTTCCTTCCGA 318 Query 331 TGTTGTCCCTGCTACTTTGAAGAAGTCTGCTAAGCCCGGTGGTCGTCCCTTTGGTGGCCC 390 |||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||||||||| Sbjct 319 TGTTGTTCCTGCTACTTTGAAGAAGTCTGCTAAGCCTGTTGGCCGTTCCTTTGGTGGCCC 378 Query 391 ACCTGGTG 398 || ||||| Sbjct 379 ACATGGTG 386 Score = 353 bits (191), Expect = 1e-96 Identities = 221/236 (94%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 466 TGGAGGCCCACGTGGTGGTGATGAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTT 525 ||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 370 TGGTGGCCCACATGGTGGTGATGAAAAGGGTGGAGCTCCAGCTGATTTTCAGCCGTCTTT 429 Query 526 CCAAGGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAGTGCAGCAGC 585 ||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 430 CCAAGGAGGTGGTGGAAGGCCTGGCTTTGGCCGTGGTGCAGGCGGTTACAGTTCAGCAGC 489 Query 586 ACCATCTGGTTCAGGGTTCCCTTGAAAAATTTGTTGTCATATTGCGACGATGGAAGGACA 645 |||||||||||| ||||||||||||||||||||||||||| || | || ||||||||||| Sbjct 490 ACCATCTGGTTCTGGGTTCCCTTGAAAAATTTGTTGTCATCTTACAACTATGGAAGGACA 549 Query 646 GTTTTGTTTTTTGTTCTAGTTCTGTTTGTGTAATGCAAATCTGGAATCTATAATCT 701 ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 550 GTTTTGTTTTTTGTTCTAGTTTTGTTTGTGTAATGCAAATCCAGAATCTATAATCT 605 > Ahg495335 jgi|Araly1|495335|fgenesh2_kg.8__1151__AT5G52650.1 Length=758 Score = 536 bits (290), Expect = 9e-152 Identities = 472/555 (85%), Gaps = 32/555 (6%) Strand=Plus/Plus Query 77 ATGATTATCTCAGAGAAC-AATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGT 135 ||||||||||||||| | || |||| ||| |||||||| |||||||||||||| ||||| Sbjct 96 ATGATTATCTCAGAG-GCTAACCGCAAAGAAATCTGCAAGTACCTTTTCAAAGAAGGAGT 154 Query 136 ATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGATTGATGTACCAAACCT 195 |||||||||||||| ||||||||||| | |||||||||||||| ||||| || ||||| Sbjct 155 TTGCTTTGCTAAGAAAGATTTCAATCTTGCTAAGCATCCGTTGATCGATGTCCCGAACCT 214 Query 196 GCAAGTGATTAAGCTCATGCAGAGTTTCAAGTCCAAGGAGTACGTTAGGGAGACATTTGC 255 ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 215 GCAAGTGATTAAGCTGATGCAGAGTTTCAAATCCAAGGAGTATGTTAGGGAGACATTTGC 274 Query 256 GTGGATGCATTATTATTGGTTTCTGACTAATGAAGGAATTGAGTTCTTGAGAACTTATCT 315 |||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 275 GTGGATGCATTACTATTGGTTTTTGACCAATGAAGGAATTGAGTTCTTGAGAACTTATCT 334 Query 316 TAACCTTCCTTCCGATGTTGTCCCTGCTACTTTGAAGAAGTCTGCTAAGCCCGGTGGTCG 375 ||| ||||| || |||||||| |||||||||||||||||||| |||||||| | |||||| Sbjct 335 TAATCTTCCATCTGATGTTGTTCCTGCTACTTTGAAGAAGTCAGCTAAGCCTGTTGGTCG 394 Query 376 TCCCTTTGGTGGCCCACCTGGTGATCGC-CAAAGAGGACCACCTCGCTC-TGATGGAG-A 432 | | |||||||| ||||||||||||||| ||| | ||||| ||| || ||| |||| | Sbjct 395 TTCATTTGGTGGTCCACCTGGTGATCGCTCAAGG-GGACC---TCG-TCATGAAGGAGGA 449 Query 433 --CCGTCCCAGATTTGGTGACCGTGATG-GATACCGTGGAGGCCCACGTGGTGGTGATGA 489 ||||||||| | || ||||||||||| | ||||||||||| || |||||||||| ||| Sbjct 450 GACCGTCCCAGGTATGCTGACCGTGATGCG-TACCGTGGAGGTCCTCGTGGTGGTGGTGA 508 Query 490 G----------AA--GGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAAGGAGGTGG 537 | || ||||||||||||||| |||| |||||| |||||||||||| |||| Sbjct 509 GTTTGGGGGTGAAAAGGGTGGAGCTCCAGCAGATTACCAGCCATCTTTCCAAGGAAGTGG 568 Query 538 TGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAGTGCAGCAGCACCATCTGGTTC 597 || || | ||| ||||||||||| || |||||||| || || |||||||||||||| Sbjct 569 CCGT-GG--T--TTT-GGCCGTGGTGCTGGTGGTTACAGCGCGGCTGCACCATCTGGTTC 622 Query 598 AGGGTTCCCTTGAAA 612 ||| || |||||||| Sbjct 623 AGGTTTGCCTTGAAA 637 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31375160691 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5