BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25740.1
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492247 jgi|Araly1|492247|fgenesh2_kg.7__1680__AT4G25740.2 601 3e-171
Ahg495335 jgi|Araly1|495335|fgenesh2_kg.8__1151__AT5G52650.1 536 9e-152
> Ahg492247 jgi|Araly1|492247|fgenesh2_kg.7__1680__AT4G25740.2
Length=605
Score = 601 bits (325), Expect = 3e-171
Identities = 354/368 (96%), Gaps = 2/368 (1%)
Strand=Plus/Plus
Query 32 TCAAGCTCAGTGCCTC-TTTGCAGCGAAAGCTCAACCAACAAGACGATGATTATCTCAGA 90
|||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 20 TCAAGCTCAGTGCCTCTTTTAC-GCGAAAGCTCAACCAACAAGACGATGATTATCTCAGA 78
Query 91 GAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGTATGCTTTGCTAAGAA 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 GAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGTATGCTTTGCTAAGAA 138
Query 151 GGATTTCAATCTCCCAAAGCATCCGTTGATTGATGTACCAAACCTGCAAGTGATTAAGCT 210
||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 139 GGATTTCAATCTCGCGAAGCATCCTTTGATTGATGTACCAAACCTGCAAGTGATTAAGCT 198
Query 211 CATGCAGAGTTTCAAGTCCAAGGAGTACGTTAGGGAGACATTTGCGTGGATGCATTATTA 270
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 199 CATGCAGAGTTTCAAGTCCAAGGAGTATGTTAGGGAGACATTTGCGTGGATGCATTATTA 258
Query 271 TTGGTTTCTGACTAATGAAGGAATTGAGTTCTTGAGAACTTATCTTAACCTTCCTTCCGA 330
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 259 TTGGTTTCTGACTAATGAAGGGATTGAGTTCTTGAGAACTTATCTTAACCTTCCTTCCGA 318
Query 331 TGTTGTCCCTGCTACTTTGAAGAAGTCTGCTAAGCCCGGTGGTCGTCCCTTTGGTGGCCC 390
|||||| ||||||||||||||||||||||||||||| | ||| ||| |||||||||||||
Sbjct 319 TGTTGTTCCTGCTACTTTGAAGAAGTCTGCTAAGCCTGTTGGCCGTTCCTTTGGTGGCCC 378
Query 391 ACCTGGTG 398
|| |||||
Sbjct 379 ACATGGTG 386
Score = 353 bits (191), Expect = 1e-96
Identities = 221/236 (94%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 466 TGGAGGCCCACGTGGTGGTGATGAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTT 525
||| ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 370 TGGTGGCCCACATGGTGGTGATGAAAAGGGTGGAGCTCCAGCTGATTTTCAGCCGTCTTT 429
Query 526 CCAAGGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAGTGCAGCAGC 585
||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 430 CCAAGGAGGTGGTGGAAGGCCTGGCTTTGGCCGTGGTGCAGGCGGTTACAGTTCAGCAGC 489
Query 586 ACCATCTGGTTCAGGGTTCCCTTGAAAAATTTGTTGTCATATTGCGACGATGGAAGGACA 645
|||||||||||| ||||||||||||||||||||||||||| || | || |||||||||||
Sbjct 490 ACCATCTGGTTCTGGGTTCCCTTGAAAAATTTGTTGTCATCTTACAACTATGGAAGGACA 549
Query 646 GTTTTGTTTTTTGTTCTAGTTCTGTTTGTGTAATGCAAATCTGGAATCTATAATCT 701
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 550 GTTTTGTTTTTTGTTCTAGTTTTGTTTGTGTAATGCAAATCCAGAATCTATAATCT 605
> Ahg495335 jgi|Araly1|495335|fgenesh2_kg.8__1151__AT5G52650.1
Length=758
Score = 536 bits (290), Expect = 9e-152
Identities = 472/555 (85%), Gaps = 32/555 (6%)
Strand=Plus/Plus
Query 77 ATGATTATCTCAGAGAAC-AATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGT 135
||||||||||||||| | || |||| ||| |||||||| |||||||||||||| |||||
Sbjct 96 ATGATTATCTCAGAG-GCTAACCGCAAAGAAATCTGCAAGTACCTTTTCAAAGAAGGAGT 154
Query 136 ATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGATTGATGTACCAAACCT 195
|||||||||||||| ||||||||||| | |||||||||||||| ||||| || |||||
Sbjct 155 TTGCTTTGCTAAGAAAGATTTCAATCTTGCTAAGCATCCGTTGATCGATGTCCCGAACCT 214
Query 196 GCAAGTGATTAAGCTCATGCAGAGTTTCAAGTCCAAGGAGTACGTTAGGGAGACATTTGC 255
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 215 GCAAGTGATTAAGCTGATGCAGAGTTTCAAATCCAAGGAGTATGTTAGGGAGACATTTGC 274
Query 256 GTGGATGCATTATTATTGGTTTCTGACTAATGAAGGAATTGAGTTCTTGAGAACTTATCT 315
|||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 275 GTGGATGCATTACTATTGGTTTTTGACCAATGAAGGAATTGAGTTCTTGAGAACTTATCT 334
Query 316 TAACCTTCCTTCCGATGTTGTCCCTGCTACTTTGAAGAAGTCTGCTAAGCCCGGTGGTCG 375
||| ||||| || |||||||| |||||||||||||||||||| |||||||| | ||||||
Sbjct 335 TAATCTTCCATCTGATGTTGTTCCTGCTACTTTGAAGAAGTCAGCTAAGCCTGTTGGTCG 394
Query 376 TCCCTTTGGTGGCCCACCTGGTGATCGC-CAAAGAGGACCACCTCGCTC-TGATGGAG-A 432
| | |||||||| ||||||||||||||| ||| | ||||| ||| || ||| |||| |
Sbjct 395 TTCATTTGGTGGTCCACCTGGTGATCGCTCAAGG-GGACC---TCG-TCATGAAGGAGGA 449
Query 433 --CCGTCCCAGATTTGGTGACCGTGATG-GATACCGTGGAGGCCCACGTGGTGGTGATGA 489
||||||||| | || ||||||||||| | ||||||||||| || |||||||||| |||
Sbjct 450 GACCGTCCCAGGTATGCTGACCGTGATGCG-TACCGTGGAGGTCCTCGTGGTGGTGGTGA 508
Query 490 G----------AA--GGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAAGGAGGTGG 537
| || ||||||||||||||| |||| |||||| |||||||||||| ||||
Sbjct 509 GTTTGGGGGTGAAAAGGGTGGAGCTCCAGCAGATTACCAGCCATCTTTCCAAGGAAGTGG 568
Query 538 TGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAGTGCAGCAGCACCATCTGGTTC 597
|| || | ||| ||||||||||| || |||||||| || || ||||||||||||||
Sbjct 569 CCGT-GG--T--TTT-GGCCGTGGTGCTGGTGGTTACAGCGCGGCTGCACCATCTGGTTC 622
Query 598 AGGGTTCCCTTGAAA 612
||| || ||||||||
Sbjct 623 AGGTTTGCCTTGAAA 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31375160691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5