BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25750.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945508 jgi|Araly1|945508|scaffold_701737.1 2682 0.0
> Ahg945508 jgi|Araly1|945508|scaffold_701737.1
Length=1775
Score = 2682 bits (1452), Expect = 0.0
Identities = 1643/1737 (95%), Gaps = 6/1737 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTCGTACACTTTATCCACCTCTTCCATCTCCTACGCCAAACCTCTTTCACCGCTC 60
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGAGTCATATACTTTATCCACCTCTTCCATCTCCTACGCCAAACCTCTTTCACCGCTC 80
Query 61 CTCCTCACGGCGGAGCAACCTTCCTT-CATCCTCCGCAACATCACTCTCACCTCTCATCC 119
||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 81 CTCCTCACGGCCGAGCAACCTT-CTTACATCCTCCGCAACATCACTCTCACCTCTCATCC 139
Query 120 TTCCCAAATCCTCGCCATTATTGGCCCTAGCGGCGCCGGAAAATCAACTCTCCTTGATAT 179
||||||||| ||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 140 TTCCCAAATTCTCGCCATTGTTGGCCCTAGCGGCGCCGGAAAATCAACTCTTCTCGATAT 199
Query 180 CCTTGCCGCAAGAACCTCCCCGACCTCAGGCTCAATACTTCTAAACTCCGTCCTTATTAA 239
||| ||||| ||||||| ||||||||| |||||||| | |||||||||||||| ||||||
Sbjct 200 CCTCGCCGCGAGAACCTTCCCGACCTCTGGCTCAATGCATCTAAACTCCGTCCCTATTAA 259
Query 240 CCCTTCTTCTTACCGTAAAATCTCCTCCTACGTTCCTCAACACGACACCTTCTTCCCTCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 CCCTTCTTCTTACCGTAAAATCTCCTCCTACGTTCCTCAACACGACACCTTCTTCCCTCT 319
Query 300 CCTCACCGTCTCCGAGACCTTCACTTTCTCCGCCTCTCTCTTGCTCCCAAAAAACCTATC 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 320 CCTCACCGTCTCCGAGACCTTCACTTTCTCTGCCTCTCTCTTGCTCCCAAAAATCCCATC 379
Query 360 AAAAGTCTCCAGTGTCGTTGCTTCTCTCCTCAAAGAACTAAACCTAACACATCTTGCACA 419
||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct 380 AAAAGTCTCCAATGTCGTCGTTTCTCTCCTCAAAGAACTAAACTTAACACATCTTGCACA 439
Query 420 TACAAGACTAGGTCAAGGCTTGTCCGGTGGTGAACGCAGGAGGGTTTCAATTGGTCTAAG 479
||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 440 TACAAGACTCGGTCAAGGCTTGTCCGGTGGTGAACGTAGGAGGATTTCAATCGGTCTAAG 499
Query 480 TCTTCTTCATGATCCGGAAGTACTACTCCTCGACGAACCCACCTCGGGTTTAGACAGTAA 539
||||||||| ||||| ||| | ||||| || |||||||||||||||||||||||||||||
Sbjct 500 TCTTCTTCACGATCCAGAATTTCTACTGCTTGACGAACCCACCTCGGGTTTAGACAGTAA 559
Query 540 ATCCGCTTTCGATGTCGTTCAAATTCTCAAATCTATTGCGACGTCCAGAGAAAGGATCGT 599
||||||||| ||||||||||| |||||||||| |||||| ||||| ||| || | |||||
Sbjct 560 ATCCGCTTTTGATGTCGTTCAGATTCTCAAATTTATTGCTACGTCGAGACAACGAATCGT 619
Query 600 GATCTTGTCCATACACCAACCTAGCTTCAAGATCCTGTCTCTCATCGATCGCGTGTTACT 659
||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 620 GATCTTGTCCATACATCAACCTAGCTTCAAGATTCTATCTCTCATTGATCGCGTGTTACT 679
Query 660 CCTTTCTAAAGGAACCATTGTATATCATGGAAGGCTTGACTTACTTGAAGCATTCTTGCT 719
||||||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 680 TCTTTCTAAAGGAACCGTTGTATACCATGGAAGACTTGACTTACTCGAAGCTTTCTTGCT 739
Query 720 CTCCAAGGGATTCACGGTTCCTTCTCAGCTGAATTCTCTTGAGTACGCTATGGAGATACT 779
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 740 CTCCAAGGGATTCACTGTTCCTCCTCAGCTGAATTCTCTTGAGTACGCTATGGAGATACT 799
Query 780 TCAGAACATCCGTGATCCCTACGAAAACGCCAACATTGCTCTTCCAGACCACTGCCCTGA 839
||||||| ||| |||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 800 TCAGAACCTCCATGATCCCTACGAGAACGCCAACATTGCTCTCCCAGATCACTGCCCTGA 859
Query 840 AAGTAAAAAACAGAACCAA-AAACAGAGCATTGTTCGATATAAAAGCTCGAGAATCACCG 898
||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| | ||
Sbjct 860 AAGTAAAAAACAGAA-CAACAAACAGAGCATTGTTCGACATAAAAGCTCGAGAATTAACG 918
Query 899 AAATAAGCCTTCTCTCTAGCAGGTTTTGGAAGATCATATACCGTACAAGGCAGTTGCTTC 958
||||||||||||| ||||| || || ||||||||||||||||| ||||||||||||||||
Sbjct 919 AAATAAGCCTTCTTTCTAGTAGATTCTGGAAGATCATATACCGAACAAGGCAGTTGCTTC 978
Query 959 TAACAAACATCTTAGAATCTCTTGTAGTCGGTCTTGTCTTAGGCACTATCTACCTTAATA 1018
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 979 TAACCAACTTCTTAGAAGCTCTTGTAGTCGGTCTTGTCTTAGGCACTATCTACCTAAATA 1038
Query 1019 TCGGAACTGGCAAAGAAGGAATCAGGAAACGATTTGGCCTTTTCGCATTCACCCTCACAT 1078
| ||||| |||||||||||||||| ||| ||||| |||||||| ||||||||||||||||
Sbjct 1039 TTGGAACCGGCAAAGAAGGAATCAAGAAGCGATTCGGCCTTTTTGCATTCACCCTCACAT 1098
Query 1079 TCCTCCTCTCCTCCACTACCCAAACCCTTCCAATATTCATTGATGAACGACCTATTCTTC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TCCTCCTCTCCTCCACTACCCAAACCCTTCCAATATTCATTGATGAACGACCTATTCTTC 1158
Query 1139 TCCGAGAAACCTCAAGCGGACTCTACAGACTCTCCTCTCACATTCTTGCAAACACTTTGG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1159 TCCGAGAAACCTCAAGCGGACTCTACAGACTCTCCTCTCACATTCTTGCAAACACCTTGG 1218
Query 1199 TTTTCTTGCCATACTTGCTACTCATCGCAATCATCTACTCTGTCTCACTCTATTTCCTTG 1258
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 TTTTCTTGCCCTACTTGCTCCTCATCGCAATCATCTACTCTGTCTCACTCTATTTCCTTG 1278
Query 1259 TAGGACTCTGCTTTTCATGGCAAGCTCTCGCCTACTTTGTGCTCGTAATCTGGATCATTG 1318
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1279 TAGGTCTCTGCTTTTCATGGCAAGCTTTCGCCTACTTTGTGCTCGTAATCTGGATCATTG 1338
Query 1319 TCCTAATGGCTAACTCTTTTGTACTTTTCTTGAGCTCTCTCGCACCTAACTACATTGCTG 1378
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 1339 TCCTAATGGCTAACTCTTTTGTCCTTTTCTTGAGCTCTCTCGCGCCTAACTACATCGCTG 1398
Query 1379 GAACATCTTC-AGTGACCATTCTTCTTGCGGCTTTCTTCTTGTTCTCTGGTTACTTCATC 1437
| ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1399 GTACATC-TCTAGTGACCATTCTTCTTGCGGCTTTCTTCTTGTTCTCTGGCTACTTCATC 1457
Query 1438 TCTAAAGAGAGTCTTCCCAAGTACTGGCTCTTCATGTACTTCTTCTCAATGTACAAGTAT 1497
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1458 TCTAAAGAGAGTCTTCCAAAGTACTGGCTCTTTATGTACTTCTTCTCAATGTACAAGTAT 1517
Query 1498 GCGTTGGACGCACTTCTGATAAATGAGTACTCGTGTCTGCACAACAAGTGCCTGGTCTGG 1557
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1518 GCGTTGGACGCACTTCTGATAAATGAGTATTCGTGTCTGCACAACAAGTGCCTGGTCTGG 1577
Query 1558 TTTGAGGAAGCTTCTGTGAATAGCTGCTTAGTTACTGGAGGTGACGTGTTAGACAAGAAT 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 TTTGAGGAAGCTTCTGTGAATAGCTGCTTAGTTACTGGAGGTGACGTGTTAGACAAGAAT 1637
Query 1618 GGGCTTCATGAGAGACAGAGGTGGTTTAATGTTTATATGTTGTTAGGGTTCTTCGTACTA 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 GGGCTTCATGAGAGACAGAGGTGGTTTAATGTTTATATGTTGTTAGGGTTCTTCGTACTA 1697
Query 1678 TATCGTGTTTTGTGTTTTCTTGTTTTGCTTAAAAGGGTTTCGGGTTCCAAAAGATAA 1734
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1698 TATCGTGTTTTGTGTTTTCTTATTTTGCTTAAAAGGGTTTCGGGTTCCAAAAGATAA 1754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5