BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25760.1
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492244 jgi|Araly1|492244|fgenesh2_kg.7__1677__AT4G25760.1 874 0.0
> Ahg492244 jgi|Araly1|492244|fgenesh2_kg.7__1677__AT4G25760.1
Length=664
Score = 874 bits (473), Expect = 0.0
Identities = 594/650 (91%), Gaps = 18/650 (3%)
Strand=Plus/Plus
Query 66 AAACACACATGCAGACAATGGAAGGACGACAATATAATTACCAAGACAGCATAAAC-GCG 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 AAACACACATGCAGACAATGGAAGGACGACAATATAATTACCAAGACAGCATAAACAG-G 59
Query 125 AGCTCCTCCATGGTGGTGCCTCACTCGCCTTGGCACTCTCCGGTTCCTTATCTCTTCGGT 184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 60 AGCTCCTCCATGGTGGTGCCTCACTCGCCGTGGCACTCTCCGGTTCCTTATCTCTTCGGT 119
Query 185 GGTTTGGCCGCCATGTTGGCTCTCATCTGCG-TCGCTCTTCTCATCCTCGCATGTTCCTA 243
||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||| ||
Sbjct 120 GGTTTGGCCGCCATGTTGGCTCTCATC-GCGGTCGCTCTTCTCATTCTCGCCTGTTCTTA 178
Query 244 CTGGAGACTCTCCGGCTCCGCTGAGAGAGATCTTGAGGCCGGAGATGATGCCAAACCCGA 303
|||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||
Sbjct 179 CTGGAGACTCTCCGGCTCCGCTCAGAGTGATCTCGAGGCCGGAGATGATGCTAAACCCGA 238
Query 304 CAATGACACCAACAAAACTAAGCACACAGAAATGCCGGAGAAGTTTCTCGTCATAATGGC 363
||||||||| ||||| |||||| || | ||||||||||||||||||||||| |||||
Sbjct 239 CAATGACACTAACAAGTCTAAGCCCATGGTGATGCCGGAGAAGTTTCTCGTCATCATGGC 298
Query 364 CGGTGATGTCAGACCTACTTACTTGGCTACGCCAGCGACTCGGTCTGAGCAAAGCTGTAC 423
||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 299 CGGTGATATCAAACCTACTTACTTGGCTACGCCGGCGACTCGGTCTGAGCAAAGCTGTAC 358
Query 424 TTGCGGCGATCATAACGAAGAAGAAGGAAGAAGAGGGTAGTGATCAGGTGGTATAGCAGA 483
||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |||||
Sbjct 359 TTGCGGCGATCATAACGCAGAAGAAGGAAGAGGAGGTTAGTGATCAGGTGGTACGGCAGA 418
Query 484 GCACCGGAGGTTACGGTGAGCCCTCCCTCATATTTTGAAAACAGAGCATTCGTTACGGAG 543
||||||||||||||||||| || || |||| |||||||||||||||| |||||||||||
Sbjct 419 GCACCGGAGGTTACGGTGATCCGTCATTCATCTTTTGAAAACAGAGCAATCGTTACGGAG 478
Query 544 TACTCCGGAATCGATCCGTCCGGTCTTTTTGTGTCGG-T---T-CATAATTACGCCAACC 598
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 479 TACTCCGGAATCGATCCGTCCGGTCTTTTTGTGTCGGGTCGGTTCATAATTACGCCAACC 538
Query 599 TTACGTGAGCTGATGGGATATAAATTAGAGTTTTATTTATTTCGTATGGTTTTAGttttt 658
|||||||||| | | ||||| ||||||||||||||| ||||||||||||| ||| |
Sbjct 539 TTACGTGAGC-G--G--ATATAG-TTAGAGTTTTATTTACTTCGTATGGTTTT--TTTAT 590
Query 659 ttttGGTTGTCTCAGTTTTCTTCAAATTTTTCCCGTTTATGGTTCATGAA 708
||| |||||||| |||||||||| ||||||| |||||||||| |||||||
Sbjct 591 TTT-GGTTGTCTTAGTTTTCTTCTAATTTTTGCCGTTTATGGGTCATGAA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28134712746
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5