BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25770.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492243 jgi|Araly1|492243|fgenesh2_kg.7__1676__AT4G25770.1 2579 0.0
> Ahg492243 jgi|Araly1|492243|fgenesh2_kg.7__1676__AT4G25770.1
Length=1680
Score = 2579 bits (1396), Expect = 0.0
Identities = 1593/1687 (94%), Gaps = 18/1687 (1%)
Strand=Plus/Plus
Query 1 ACTGTTGCTTAGCGCCTCCGCAAAACCCGCAAATTGTAACACTTCTTCGCCGGAAAAGTT 60
||||||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||
Sbjct 1 ACTGTTGCTTAGCGCCTCCGCAAAAACCGCAAATGGTAAGGCTTCTTCGCCGGGAAAGTT 60
Query 61 AAGCGACTTGTCATCATCAGTTTGCTAGTCAGGAA-GATA----ACTTCCTTCTTATTGT 115
||||||||||||||||||| || | ||| |||||| |||| |||||||||||||||
Sbjct 61 AAGCGACTTGTCATCATCACTTCGATAGGCAGGAAGGATACTGTACTTCCTTCTTATTGC 120
Query 116 GTTCCTTTTACTTCCACATGATCGCGTCCTTCTCCAGATTCCAAATCTCAATCCCCGATT 175
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 G-TCCTTTTACTTCCACATGATCGCGTCCTTCTCCAGATTCCAAATCTCAATCCCCGATT 179
Query 176 TGATTCCGTCTTCACCGCGATTTCTTCCGCCTAGTCAAAACCAGTTCCGTTTCAGATTAT 235
||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct 180 TGATTCCGTCTTCACCGCGATTTCTTCGGCCTAGTCAACACCAGTTCCGTTTCGGATTAT 239
Query 236 ACCTTCAATTTCCAGCTCAACCTAAGAATCTCTG-TCAAATGGAGTGGATGAATCGTCTT 294
|||||| |||||| |||||||||||||||||| | |||||||||||||||||| || |||
Sbjct 240 ACCTTCGATTTCCCGCTCAACCTAAGAATCTC-GATCAAATGGAGTGGATGAACCGCCTT 298
Query 295 GGAATCGGTTGCTTTGCGGCGAATCGAAGCAAAAGAGAGCTGACGACGGAGATCGACAAC 354
||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||| |||
Sbjct 299 GGAATCGGTTGCTTTTCGGCGAATCGAAGCAAAAGGGAGCTGAAGACGGAGATCGATAAC 358
Query 355 GGCGGAGAAGACTTT-TTCGATGCGGATGTTATGGAGTCTGCGGAGAAGCCTGATCATTT 413
|||||||| || ||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 359 GGCGGAGAGGA-TTTCTTCGATGCGGATGTTATGGAGTCTGCTGAGAAGCCGGATCATTT 417
Query 414 GGTGGTCATGGTTAACGGAATCGTTGGCAGTGCGGCGGATTGGAAATATGCGGCGGAGCA 473
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GGTTGTCATGGTTAACGGTATCGTTGGCAGTGCGGCGGATTGGAAATATGCGGCGGAGCA 477
Query 474 GTTCGTGAAGAAGTTCCCGGATAAAGTACTAGTGCACCGTAGCGAGAGTAATAGTGCAAC 533
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 478 GTTCGTGAAGAAGTTCCCGGACAAAGTACTTGTGCACCGTAGCGAGAGCAATAGTGCAAC 537
Query 534 GTTGACATTTGATGGTGTTGATAAAATGGGTGAAAGGCTAGCTAATGAGGTTTTGGGTGT 593
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 538 GTTGACGTTTGATGGTGTTGATAAAATGGGTGAAAGACTAGCTAATGAGGTTTTGGCTGT 597
Query 594 TGTTAAGCATAGAAGTGGGCTGAAGAAGATATCTTTTGTGGCTCATTCATTAGGAGGTCT 653
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 598 TGTTAAGCATAGAAGTGGGCTGAAGAAGATCTCTTTTGTGGCTCATTCATTAGGTGGTCT 657
Query 654 TGTTGCAAGATATGCCATAGGGAAGCTCTATGAACAGCCAGGGGAAGTCGACTCTCTGGA 713
||||||||| |||||| |||||||||||||||||| || | |||| ||||||| ||||
Sbjct 658 TGTTGCAAGGTATGCCGTAGGGAAGCTCTATGAACTGCGTGTCGAAGCCGACTCTTTGGA 717
Query 714 CTCTCCTTCGAAGGAGAAGAGCGCAAGAGGAGGCGAAATTGCTGGGTTAGAACCTATGAA 773
||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 718 TTCTCCTTTGAAGGAGAGGAGCACAAGAGGAGGCGAAATTGCTGGGTTAGAACCTATGAA 777
Query 774 CTTTATAACTTTCGCAACGCCTCATCTTGGTTCAAGAGGACATAGACAGTTCCCGATTCT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTTTATAACTTTCGCAACGCCTCATCTTGGTTCAAGAGGACATAGACAGTTCCCGATTCT 837
Query 834 TTGTGGCCTTCCGTTTCTTGAAAGAACAGCATCCCAAACTGCACATTTGGCTGCTGGGAG 893
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 838 TTGTGGCCTTCCGTTTCTTGAAAGGACAGCCTCCCAAACTGCACATTTGGCTGCTGGGAG 897
Query 894 GACCGGAAAGCATTTGTTTCTGGTGGACAACGATGATGGAAATGCTCCACTTCTTATCCG 953
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GACCGGAAAGCATTTATTTCTGGTGGACAACGATGATGGAAATGCTCCACTTCTTATCCG 957
Query 954 GATGGCTACAGATTCTGATGACTTGAAATTCATATCAGCTTTAAATGCTTTCAAGCGTCG 1013
||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 958 GATGGCTACAGATTCGGATGACTTAAAATTCATATCAGCTTTACATGCTTTCAAGCGTCG 1017
Query 1014 TGTGGCATATGCAAACGTGAATTTTGATTCTATGGTTGGATGGAGGACATCTTCAATTCG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TGTGGCATATGCAAACGTGAATTTTGATTCTATGGTTGGATGGAGGACATCTTCAATTCG 1077
Query 1074 CCGTCCAAATGAACTCCCAAAGCCAAATCTTCTAGCAACGGATCCAAACTATCCACACAT 1133
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1078 CCGTCCAAATGAACTCCCAAAGCCAAATCTTCTAGCAACTGATCCAAACTATCCACACAT 1137
Query 1134 TGTATACGTAGAACGTGGAAATGTGGACAATGGTAGTTGCCAGTCAACTTCTACAGTAGT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGTATACGTAGAACGTGGAAATGTGGACAATGGTAGTTGCCAGTCAACTTCTACAGTAGT 1197
Query 1194 AACAGAGCAAGATACTGATCTTGAAGAGGAAATGATACATGGACTCAGTCAACTATCTTG 1253
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AACAGAGCAAAATACTGATCTTGAAGAGGAAATGATACATGGACTCAGTCAACTATCTTG 1257
Query 1254 GGAAAGAGTAGATGTCAGCTTTCACAATAGCAAGCAACGATACGTCGCGCATAGTACCAT 1313
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 1258 GGAAAGAGTAGATGTCAGTTTTCACAATAGCAAGCAACGATACGTTGCTCATAGTACCAT 1317
Query 1314 CCAGGTGAAAACATATTGGTTACATTCTGATGGCAAAGATGTTGTCTTCCACATGATGGA 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TCAGGTGAAAACATATTGGTTACATTCTGATGGCAAAGATGTTGTCTTCCACATGATGGA 1377
Query 1374 TCATTTCGGTCTCTAGCCCTAAACATTTTCAACCGCTGCAATT-AGTCAGCACTGTAAGA 1432
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1378 TCATTTCGGTCTCTAGCCCCAAACATTTTCAACCGCTGCAATTTAGTCAGCACTGTAAGA 1437
Query 1433 AGGCGATAAGCATCACAAACTTCTTCTCTT-TT--TTGTTGGTTATTTATATCGTATTTA 1489
|||||||| ||| |||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1438 AGGCGATACCCATTACAAACTTCTTCTCTTCTTCCTTTTTGGTTATTTATATCGTATTTA 1497
Query 1490 GTATGATGCTTGATGCGATACAAATCGTGGTAAAGTTCTTGGCACTTTTTCCTTGATGGT 1549
||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1498 GTACGATGCTTGATGCGATACAAATCGTGGGAAAGTTCTTGCCACTTTTTCCTTGATGGT 1557
Query 1550 TATTTAAAATGTTTTATAGTTCTGTCGAACAATGAATCTGTACAGATCTACCCGTTCTTT 1609
||| |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1558 TATATAAAATGTTTTATAATTCTGTCGAACTATGAATCTGTACAGGTCTACTCGTTCTTT 1617
Query 1610 GTaaaaaaaaaaGGTTCATACTTCTCTTGTCACTATCGATTCTATAAGTTTTTGTTTTGA 1669
|||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1618 GTAAAAAAAAAA----CATCCTTTTCTTGTCACTATCGATTCTGTAAGTTTTTGTTTTGA 1673
Query 1670 TCATAAG 1676
|| ||||
Sbjct 1674 TCTTAAG 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5