BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25780.1
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492242 jgi|Araly1|492242|fgenesh2_kg.7__1675__AT4G25780.1 1378 0.0
> Ahg492242 jgi|Araly1|492242|fgenesh2_kg.7__1675__AT4G25780.1
Length=862
Score = 1378 bits (746), Expect = 0.0
Identities = 829/868 (96%), Gaps = 10/868 (1%)
Strand=Plus/Plus
Query 1 AGCACCTACAAAACAATATAATCTCAGAAAAGAGAGAGGATGAGCTCATCCTATTTACGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGCACCTACAAAACAATATAATCTCAGAAAAGAGAGAGGATGAGCTCATCCTATTTACGA 60
Query 61 GTAATATTACTCTTAGGTGCCCTTAATGTCGTCGTTTCTTTATCAATAACCAATTCTTTA 120
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 61 GTAATATTACTCTTAGGTGCCCTTAATGTCGTTGTTTCCTTATCAATAACCAAGTCATTA 120
Query 121 ATAACCAAATCAGCAACACTCGGTCAGGTGTTCCGAATCTGTAAGAATTTGTGTCCGGGA 180
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATAACCAAATCTGCAACCCTCGGTCAGGTGTTCCGAATCTGTAAGAATTTGTGTCCGGGA 180
Query 181 TGTGACCACGACTCCTTGCAGTTCTTGTTCCGACACAACCTGGTCCGTGCCGCAAGATTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTGACCACGACTCCTTGCAGTTCTTGTTCCGACACAACCTGGTCCGTGCCGCAAGATTC 240
Query 241 GAACCTCCTTTGATATGGGACCGCAGACTCCAGAACTACGCCCAAGGGTGGGCTAATCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAACCTCCTTTGATATGGGACCGCAGACTCCAGAACTACGCCCAAGGGTGGGCTAATCAA 300
Query 301 AGAAGGGGAGATTGTGCTTTGAGACACTCTGTCTCAAACGGAGAGTTTAATCTCGGCGAG 360
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 301 AGAAGGGGAGATTGTGCTTTGAGACACTCTTTCTCGAACGGAGAGTTTAATCTCGGCGAG 360
Query 361 AACATCTACTGGGGATACGGCGCCAACTGGTCTCCGGCCGACGCGGTGGTTGCATGGGCC 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 AACATCTACTGGGGATACGGCGCCAACTGGTCTCCGGCCGATGCGGTGGTTGCATGGGCC 420
Query 421 AGCGAGAAGAGGTTTTATCATTACGGCTCCAACACGTGCGACGCTGGTCAGATGTGTGGT 480
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 421 AGCGAGAAGAGGTTTTATCATTACGGCTCCAACACGTGCGACCCTGGTCAGATGTGTGGC 480
Query 481 CATTACACACAGATTGTGTGGAAGAGCACTAGGAGGGTCGGATGTGCACGTGTGGTGTGC 540
||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||
Sbjct 481 CATTACACACAGATTGTGTGGAAGAACACGAGGAGGGTCGGGTGTGCACGTGTTGTGTGC 540
Query 541 GACAATGGTGGGATCTTCATGACTTGTAACTATGATCCTCCCGGTAACTACATCGGCCAG 600
|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 541 AACAATGGTGGAATCTTCATGACTTGCAACTATGATCCTCCCGGCAACTACATCGGCCAG 600
Query 601 AAACCCTATTAATTTATCATCATTTATCTATTAA--AAA--TTCTCCAAAATAAAGTCAT 656
|||||||||||||| ||||||||||||||||||| ||| ||||||||| || |||||
Sbjct 601 AAACCCTATTAATTGATCATCATTTATCTATTAATTAAAAATTCTCCAAATTA--GTCAT 658
Query 657 CTTACTAATTTTTTAGAAATTATGATGACTTTTTAAAGGAGATTAGGTGGGTGTATTTGT 716
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 -TT--TA-TTTTTTAGAAATTATGATGACTTTTTAAAGGAGATTAGGTGGGTGTATTTGT 714
Query 717 GTATTTTACTAGAAAATAGATCTATTTGTGGGGGTTGTGATACTAATTATGTATCTTGAT 776
||||||||||||||||||||| ||||||||||| || ||||||| |||||||||||||||
Sbjct 715 GTATTTTACTAGAAAATAGATGTATTTGTGGGGTTTATGATACTGATTATGTATCTTGAT 774
Query 777 TATTTTAATTGATGGTTGTAATTGCATCAACGGTTATTTATATATCCGTAAGAATGCCCA 836
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 775 TACTTTAATTGATGGTTGTAATTGCATTAACGGTTATTTATATATCCGTAAGAATGCCCA 834
Query 837 GTGTACAAGAATATATAAAATATAAAAA 864
|| |||||||||||||||||||| ||||
Sbjct 835 GTATACAAGAATATATAAAATATGAAAA 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32900077371
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5