BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25790.1
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492241 jgi|Araly1|492241|fgenesh2_kg.7__1674__AT4G25790.1 1168 0.0
Ahg495859 jgi|Araly1|495859|fgenesh2_kg.8__1675__AT5G57625.1 348 4e-95
> Ahg492241 jgi|Araly1|492241|fgenesh2_kg.7__1674__AT4G25790.1
Length=770
Score = 1168 bits (632), Expect = 0.0
Identities = 739/787 (94%), Gaps = 22/787 (3%)
Strand=Plus/Plus
Query 4 TTTTCTACCACCATCCAAAACAAAATCTTTGGAGCCACTCCACGAAGAA-AACAGATGGC 62
||||||||||||||||||||| |||||||||||| || | ||| || || |||||||
Sbjct 1 TTTTCTACCACCATCCAAAACGAAATCTTTGGAG-CA----A-GAA-AACAA-AGATGGC 52
Query 63 GACCACAACATCAACCCAAGCCATAGTTTTCGCAATCGCCCTTTTCTTGGTCGCCATCCA 122
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 53 GACCACAACATCAACCCAAGCCACAGTTTTCGCAATCGCCCTTTTCTTGGTCGCCATCCA 112
Query 123 AGCCGTTCATGCAGACTATTACCGGCACCGCCCACAGCGACCTATAACCCCGAGCCCTCC 182
|||||||||||||||||||| | || |||| || ||||| || ||||||||||||
Sbjct 113 AGCCGTTCATGCAGACTATT------ATCGTCCACGGCTACCTACAAACCCGAGCCCTCC 166
Query 183 TCCCTACGTTGCAAAGCCCCAGCCGCTCCCAACTCCCAGCCCCAAACCTATCCTTTATCA 242
||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 167 TCCCTACGTCGCAAAGCCCAAGCCGCTCCCAACTCCCAGCCCCAAACCTATCCTCTATCA 226
Query 243 GCCTCCTCCCACATACCAACCACCCACGGGCTCGTTCGAACAACAATTTCTTGATCCACA 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TCCTCCTCCCACATACCAACCACCCACGGGCTCGTTCGAACAACAATTTCTTGATCCACA 286
Query 303 TAATACTGTCCGAGGCGGTCTAGGTTTGCCTCCACTGGTGTGGGACGTAAAGATCGCAAG 362
||| |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 287 TAACACTGTCCGAGGCAATCTAGGTCTGCCTCCATTGGTGTGGGACGTAAAGATCGCAAG 346
Query 363 CTATGCAACATGGTGGGCTAACCAGAGGAGATACGACTGCTCCTTAACCCACTCGACCGG 422
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 347 CTATGCAACATGGTGGGCTAACCAGAGGCGATACGACTGCTCCTTAACCCATTCGACCGG 406
Query 423 CCCATACGGTGAGAACTTGTTCTGGGGAAGTGGCTCAGACTTTACATCGACTTTCGCAGT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CCCATACGGTGAGAACTTGTTCTGGGGAAGTGGCTCAGACTTTACATCGACTTTCGCAGT 466
Query 483 GGAGTCATGGACTGTGGAGGCTAAGTCCTACAACCACATGACCAACACGTGTGAAGGAGA 542
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GGAGTCATGGACCGTGGAGGCTAAGTCCTACAACCACATGACCAACACGTGTGAAGGAGA 526
Query 543 TGGTATGTGTGGTCACTACACTCAGATCGTGTGGCGTGAAACCAGGCGCCTAGGTTGCGC 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TGGTATGTGTGGTCACTACACTCAGATCGTGTGGCGTGAAACCAGGCGCCTAGGTTGCGC 586
Query 603 TAGAGTTGTCTGCGAGAACGGCGCAGGAGTTTTCATCACTTGCAACTACGACCCTCCGGG 662
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 587 TCGAGTTGTCTGCGAGAACGGCGCAGGTGTTTTCATCACTTGCAACTACGACCCTCCGGG 646
Query 663 TAACTACGTTGGGGAGAAGCCTTACTAACTTTGTCTAACACGTTAGTTGTT--TTAAA-T 719
||||||||||||||||||||||||||||||| |||||||||||| ||| | |||| |
Sbjct 647 TAACTACGTTGGGGAGAAGCCTTACTAACTTGGTCTAACACGTT-GTT-TAAATTAACGT 704
Query 720 TAACGTT-GGTGATTTCTTAATCTATGTTTTTATTCTTCTTGACTTTTGTTTCTTTTAAA 778
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 705 TA-CGTTTGGTGATTTCTTAATCTATGTTTTTATTCTTCTTGACTTTTGTTTCTTTTTAA 763
Query 779 ACTTATC 785
|||||||
Sbjct 764 ACTTATC 770
> Ahg495859 jgi|Araly1|495859|fgenesh2_kg.8__1675__AT5G57625.1
Length=845
Score = 348 bits (188), Expect = 4e-95
Identities = 511/660 (77%), Gaps = 50/660 (8%)
Strand=Plus/Plus
Query 51 AAAACAGATGGCGACCACAACATC-A--ACCCAAGCCATAGTTTTCGCAATCGCCCTTTT 107
||||| ||||||||||| | || | || |||| ||| || ||| |||| ||||| |
Sbjct 10 AAAAC-CATGGCGACCACTTCCTCGACGACACAAGTCATTGTCTTCACAATTTCCCTTCT 68
Query 108 CTTGGTCGCCATCCAAGCCGTTCATGCAGACTATTACCGGCACCGCCCACAGCGACCTAT 167
|||||| || ||||||| || ||||||||||||||||| || | |||| || | |
Sbjct 69 CTTGGTTGCTTTCCAAGCAGTCCATGCAGACTATTACCGTCAGAGGCCAC--CG--GT-T 123
Query 168 AACCCCGAGCCCTCCTCCCTACGTTGCAAAGCC-CCAG--CCGCTCCCAACTCCC-AGCC 223
||||| | || ||| ||||| | ||||| | || || || |||| ||| ||||
Sbjct 124 -ACCCCTA--CC-CCT---TACGTCCCTAAGCCACGAGTCCCACTTCCAA-GCCCGAGCC 175
Query 224 CCAAACCTATCCTTTATCAGCCTCCTCCCACATACCAAC-C-ACCCACGGGCTCGTTCGA 281
|||| ||| | | |||| ||||||| | || ||| || | |||| | ||||| |||
Sbjct 176 CCAAGCCTGT-C--TATCGGCCTCCTACTAC--ACCTACTCTACCCGCTGGCTCAATCG- 229
Query 282 AC-A-ACAATTTCTTGATCCACATAATACTGTCCGAG-GCGGTCTAGGTTTGCCTCCACT 338
| | || || |||||||||||||| || | || | | | ||||||||| |||| |
Sbjct 230 -CTAGACTGTTCCTTGATCCACATAACGCTCTTCG-GTCCAGACTAGGTTTGTATCCATT 287
Query 339 GGTGTGGGACGTAAAGATCGCAAGCTATGCAAC-ATGGTGGGCTAACCAGAGGAGATACG 397
||| ||||||| ||| | || ||||| || | ||||||||||||||||||| | ||||
Sbjct 288 GGTTTGGGACGGCAAGCTAGCGAGCTACGC-GCAATGGTGGGCTAACCAGAGGCGTTACG 346
Query 398 ACTGCTCCTTAACCCACTCGACCGGCCCATACGGTGAGAACTTGTTCTGGGGAAGTGGCT 457
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 347 ACTGCTCTTTAACCCATTCGACCGGCCCATACGGTGAGAACTTGTTCTGGGGAAGCGGCT 406
Query 458 C-AGACTTTACATC-GACTTTCGCAGTGGAGTCATGGA-CTGTGGA-GGCTAAG-TCCTA 512
| || || || | | |||||| ||| ||||||||| | || || || ||| || ||
Sbjct 407 CGAG-CTGGGCACCAGG-TTTCGCGGTGCAGTCATGGATC-GTTGAAGG--AAGGTCTTA 461
Query 513 CAACCACATGACCAACACGTGTGAAGGA-GATGGTATGTGTGGTCACTACACTCAGATCG 571
|||| ||| |||||| | ||||| ||| | ||| ||||||||||||||||||||||| |
Sbjct 462 CAACTACAACACCAACTCCTGTGACGGAAG-TGGAATGTGTGGTCACTACACTCAGATGG 520
Query 572 TGTGGCGTGAAACCAGGCGCCTAGGTTGCGCTA-GAGTTGTCTGCGAGAACGGCGCAGGA 630
|||||||||| |||| | || || ||||| | | || || || ||||||||||| |||
Sbjct 521 TGTGGCGTGACACCAAAAGGCTCGGATGCGC-ACGTGTGGTTTGTGAGAACGGCGCCGGA 579
Query 631 GTTTTCATCACTTGCAACTACGACCCTCCGGGTAACTACGTTGGGGAGAAGCCTTACTAA 690
|||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct 580 GTTTTCATCACTTGTAACTACGACCCACCGGGTAACTACGTTGGCGAGAGGCCTTACTAA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5