BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25810.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354208 jgi|Araly1|354208|fgenesh1_pg.C_scaffold_7001381 1391 0.0
> Ahg354208 jgi|Araly1|354208|fgenesh1_pg.C_scaffold_7001381
Length=861
Score = 1391 bits (753), Expect = 0.0
Identities = 827/863 (96%), Gaps = 4/863 (0%)
Strand=Plus/Plus
Query 52 ATGGCGATGATCAGTTACTCCACCATTGTGGTTGCTCTGCTTGCTTCTTTTATGATTTGC 111
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATGATCAGTTACTCCACCGTTGTGGTTGCTCTGCTTGCTTCTTTTATGATTTGC 60
Query 112 TCTGTTTCCGCCAATTTTCAACGAGACGTAGAGATAACTTGGGGAGACGGACGTGGACAG 171
||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 61 TCTGTTTCCGCCAATTTTCAAGGGGACGTGGAGATAACTTGGGGAGACGGACGTGGACAG 120
Query 172 ATCACAAACAACGGCGATCTTCTTACACTCTCTCTCGACAAAGCTTCAGGCTCAGGATTC 231
||||| || |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 121 ATCACCAATAACGGCGATCTTCTCACTCTCTCTCTCGACAAAGCTTCAGGCTCAGGATTC 180
Query 232 CAATCCAAGAACGAATATTTGTTCGGTAAAATCGACATGCAGATCAAACTCGTTGCCGGA 291
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 181 CAATCCAAGAACGAATATTTGTTTGGTAAAATCGACATGCAGATCAAGCTCGTTGCCGGA 240
Query 292 AACTCCGCTGGAACTGTCACCGCTTACTATTTGAAATCCCCTGGATCTACATGGGACGAG 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACTCCGCTGGAACTGTCACCGCTTACTATTTGAAATCCCCTGGATCTACATGGGACGAG 300
Query 352 ATTGACTTT-GAGTTCTTGGGAAACCTAAGTGGTGATCCTTACACACTTCATACTAATGT 410
||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 301 ATTGA-TTTCGAGTTCTTGGGAAACCTAAGTGGAGATCCTTACACACTTCATACCAATGT 359
Query 411 CTTTACGCAAGGAAAAGGCGATAGAGAACAACAATTCAAACTCTGGTTCGATCCCACTAG 470
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 CTTTACGCAAGGCAAAGGTGATAGAGAACAACAATTCAAACTCTGGTTCGATCCCACAAG 419
Query 471 TGATTTCCACACTTACTCTATCCTCTGGAACCCACAACGCATCATATTCTCCGTGGATGG 530
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 TGATTTCCACACTTACTCTATCCTATGGAACCCACAACGCATCATATTCTCCGTGGATGG 479
Query 531 AACTCCCATAAGAGAATTCAAGAACATGGAATCTCAAGGAACTCTGTTTCCTAAGAACCA 590
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 AACTCCAATAAGAGAATTCAAGAACATGGAATCTCAAGGAACTCTGTTTCCTAAGAATCA 539
Query 591 GCCAATGAGAATGTACTCTAGTCTATGGAACGCTGAAGAATGGGCCACAAGGGGTGGTCT 650
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 GCCGATGAGAATGTACTCGAGTCTATGGAACGCTGAAGACTGGGCCACAAGGGGTGGTCT 599
Query 651 CGTCAAAACCGACTGGTCTAAAGCTCCCTTCACTGCTTCCTACCGCGGCTTCAACGAAGA 710
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 CGTCAAAACCGACTGGTCTAAAGCTCCCTTCACCGCTTCCTACCGCGGCTTCAACGAAGA 659
Query 711 AGCTTGCGTCGTGATCAACGGCCAGTCTTCATGCCCTAACGTGTCAGGACAAGGGAGTAC 770
|||||||||||| |||||||| |||||||||||||| |||| |||||||||||| ||||
Sbjct 660 AGCTTGCGTCGTAATCAACGGGCAGTCTTCATGCCCAAACGGGTCAGGACAAGGAAGTAG 719
Query 771 TGGTTCGTGGTTGTCTCAGGAGCTAGACTCGACGGGTCAAGAACAGATGAGATGGGTACA 830
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TGGTTCGTGGTTGTCCCAGGAGCTAGACTCGACGGGTCAAGAACAGATGAGATGGGTGCA 779
Query 831 GAATAACTACATGATTTACAATTACTGTACGGACGCTAAAAGGTTCCCTCAAGGTCTTCC 890
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 GAATAACTACATGATATACAATTACTGTACGGACGCTAAGAGGTTCCCTCAAGGTCTTCC 839
Query 891 ACGCGAGTG-CTTAGCTGCGTAA 912
||||||||| || ||||||||||
Sbjct 840 ACGCGAGTGTCT-AGCTGCGTAA 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5